Diffusion SpecMiCP / ReactMiCP fdefa22a007e

Merge branch 'cleaning'
fdefa22a007e
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Authored by fabien on Aug 18 2014, 16:52.

Description

Merge branch 'cleaning'

Details

Committed

fabien

Aug 18 2014, 16:52

Parents

rSPECMICPbe84b355a07d: change copyright
rSPECMICPf1b51879d2ec: correct initialization of eigen solver - valgrind output is now ok

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Event Timeline

fabien committed rSPECMICPfdefa22a007e: Merge branch 'cleaning' (authored by fabien).Aug 18 2014, 16:52

Merged Changes

Commit	Author	Details	Committed
be84b355a07d	fabien	change copyright	Aug 18 2014
2555d4790cc7	fabien	cleaning not working gasphase in reduce_system	Aug 18 2014
768489c0ad3e	fabien	after a long absence, start cleaning	Aug 18 2014
fbc3b1f9f7c0	georget	more small corrections and preparations for the gas phase	Jun 20 2014
881a9cd5b582	georget	correct wrong activity coefficients in solution when ther is inactive components	Jun 19 2014
e4061f7461ed	georget	Use 'full' warmstart to improve computation	Jun 18 2014
54afcac13afc	georget	Make sure that the activity coefficients are computed correctly - They are not !	Jun 18 2014
9320d65b0bd7	georget	start implementing the fixed volume problem	Jun 17 2014
191e81a7b47a	georget	separate common laws, constant and unit conversion in their own files	Jun 17 2014
4d7d50dc1a4f	georget	add some constants and trivial laws	Jun 17 2014
392b50f45f16	georget	start support of gas phase in database	Jun 16 2014
2fba35c488d9	georget	correct initialization of eigen solver - valgrind output is now ok	Jun 16 2014

Changes (60)

		Path
M		CMakeLists.txt
M		data/cemdata_specmicp.js
M		src/database/canonicalizer.cpp
M		src/database/canonicalizer.hpp
M		src/database/common_def.hpp
M		src/database/data_container.cpp
M		src/database/data_container.hpp
M		src/database/database.cpp
M		src/database/database.hpp
M		src/database/mineral_selector.cpp
M		src/database/mineral_selector.hpp
M		src/database/module.hpp
M		src/database/reader.cpp
M		src/database/reader.hpp
M		src/database/selector.cpp
M		src/database/selector.hpp
M		src/database/switch_basis.cpp
M		src/database/switch_basis.hpp
M		src/micpsolver/estimate_cond_number.hpp
M		src/micpsolver/micpprog.hpp
M		src/micpsolver/micpsolver.hpp
M		src/micpsolver/micpsolver.inl
M		src/micpsolver/micpsolver_base.hpp
M		src/micpsolver/micpsolver_base.inl
M		src/micpsolver/micpsolver_min.hpp
M		src/micpsolver/micpsolver_min.inl
M		src/micpsolver/micpsolver_structs.hpp
M		src/micpsolver/ncp_function.hpp
M		src/odeint/butcher_tableau.hpp
M		src/odeint/odeint_types.hpp
M		src/odeint/runge_kutta_step.hpp
M		src/odeint/runge_kutta_step.inl
A	(dir)	src/physics/
A		src/physics/constants.hpp
A		src/physics/laws.hpp
A		src/physics/units.hpp
M		src/specmicp/equilibrium_data.cpp
M		src/specmicp/equilibrium_data.hpp
A		src/specmicp/kineticsdata.hpp
M		src/specmicp/reaction_path.cpp
M		src/specmicp/reaction_path.hpp
M		src/specmicp/reduced_system.cpp
M		src/specmicp/reduced_system.hpp
M		src/specmicp/reduced_system_solver.cpp
M		src/specmicp/reduced_system_solver.hpp
A		src/specmicp/simulation_box.hpp
M		src/specmicp/thermodata.hpp
M		src/utils/log.hpp
M		tests/database/test_data_reader.hpp
M		tests/database/test_data_selector.hpp
M		tests/micpsolver/test_cond_number.hpp
M		tests/micpsolver/test_micpsolver.hpp
M		tests/micpsolver/test_ncp_function.hpp
M		tests/odeint/test_butchertableau.hpp
M		tests/odeint/test_embeddedrungekutta.hpp
M		tests/specmicp/alkaliactivated.cpp
M		tests/specmicp/carboalu.cpp
M		tests/specmicp/kinetics.cpp
M		tests/specmicp/rate_nicoleau.cpp
M		tests/specmicp/thermocarbo.cpp