Merge branch 'reactivetransport'
fe4a3c6ffe37
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Authored by fabien on Sep 10 2014, 03:39.

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Merge branch 'reactivetransport'

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fabien

Sep 10 2014, 03:39

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Commit	Author	Details	Committed
d01a0c53637d	fabien	add the main diffusion system	Sep 10 2014
f1b23f04d9ad	fabien	introducing DiffusionSecondary for activity coefficient and concentration of…	Sep 10 2014
e0f20360e06e	fabien	move and improve equation numbering for diffusion reactive transport system	Sep 10 2014
43a8958938af	fabien	jacobian and residuals computation - not tested	Sep 10 2014
4873112352b5	fabien	add range support in database::DataContainer	Sep 10 2014
54f4e1c465c9	fabien	bug correction for diffusion system	Sep 10 2014
b1dec92efd3e	fabien	first commit on branch reactivetransport	Sep 10 2014

		Path
M		CMakeLists.txt
M		src/database/data_container.hpp
A	(dir)	src/reactmicp/
P		src/reactmicp/common.hpp Copied from src/physics/units.hpp
A	(dir)	src/reactmicp/meshes/
P		src/reactmicp/meshes/mesh1d.hpp Copied from src/database/switch_basis.hpp
A	(dir)	src/reactmicp/micpsolvers/
P		src/reactmicp/micpsolvers/parabolicprogram.hpp Copied from src/database/mineral_selector.hpp
P		src/reactmicp/micpsolvers/parabolicsolver.cpp Copied from cython/specmicp/__init__.py
P		src/reactmicp/micpsolvers/parabolicsolver.hpp Copied from cython/specmicp/__init__.py
A	(dir)	src/reactmicp/systems/
A	(dir)	src/reactmicp/systems/diffusion/
A		src/reactmicp/systems/diffusion/diffusion.cpp
A		src/reactmicp/systems/diffusion/diffusion.hpp
A		src/reactmicp/systems/diffusion/diffusion_numbering.cpp
A		src/reactmicp/systems/diffusion/diffusion_numbering.hpp
A		src/reactmicp/systems/diffusion/diffusion_secondary.cpp
A		src/reactmicp/systems/diffusion/diffusion_secondary.hpp
M		src/specmicp/equilibrium_data.hpp
A	(dir)	tests/reactmip/
A	(dir)	tests/reactmip/systems/
A	(dir)	tests/reactmip/systems/diffusion/
A		tests/reactmip/systems/diffusion/diffusion.cpp
A		tests/reactmip/systems/diffusion/numbering.cpp
A		tests/reactmip/systems/diffusion/secondary.cpp
A		tests/reactmip/systems/diffusion/test_reactmicp_diffusion.cpp
A		tests/reactmip/systems/diffusion/utils.cpp
A		tests/reactmip/systems/diffusion/utils.hpp
A		tests/test_database.hpp