Diffusion SpecMiCP / ReactMiCP febe8f3e40e1

impr:organization update reactmicp lib like the others
febe8f3e40e1
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Authored by georget on Feb 7 2016, 16:36.

Description

impr:organization update reactmicp lib like the others

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georget

Feb 7 2016, 17:08

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rSPECMICP03b21a164b96: impr:organization clean dfpm library

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georget committed rSPECMICPfebe8f3e40e1: impr:organization update reactmicp lib like the others (authored by georget).Feb 7 2016, 17:08

Changes (94)

				Path
	V			src/{ → reactmicp}/reactmicp.hpp
	M			src/reactmicp/CMakeLists.txt
	A			src/reactmicp/equilibrium_curve/CMakeLists.txt
	M			src/reactmicp/equilibrium_curve/chemistry.cpp
	M			src/reactmicp/equilibrium_curve/chemistry.hpp
	M			src/reactmicp/equilibrium_curve/eqcurve_coupler.cpp
	M			src/reactmicp/equilibrium_curve/eqcurve_coupler.hpp
	M			src/reactmicp/equilibrium_curve/eqcurve_extractor.hpp
	M			src/reactmicp/equilibrium_curve/eqcurve_solid_transport.cpp
	M			src/reactmicp/equilibrium_curve/eqcurve_solid_transport.hpp
	A			src/reactmicp/io/CMakeLists.txt
	M			src/reactmicp/io/configuration.cpp
	M			src/reactmicp/io/configuration.hpp
	M			src/reactmicp/io/configuration_unsaturated.cpp
	M			src/reactmicp/io/configuration_unsaturated.hpp
	M			src/reactmicp/io/hdf5_unsaturated.cpp
	M			src/reactmicp/io/hdf5_unsaturated.hpp
	M			src/reactmicp/io/reactive_transport.cpp
	M			src/reactmicp/io/reactive_transport.hpp
	M			src/reactmicp/io/saturated_react.cpp
	M			src/reactmicp/io/saturated_react.hpp
	V			src/{reactmicp ← }/reactmicp.hpp
	V			src/{reactmicp ← }/reactmicp_core.hpp
	V			src/{reactmicp ← }/reactmicp_saturated.hpp
	V			src/{reactmicp ← }/reactmicp_unsaturated.hpp
	A			src/reactmicp/solver/CMakeLists.txt
	M			src/reactmicp/solver/reactive_transport_solver.cpp
	M			src/reactmicp/solver/reactive_transport_solver.hpp
	M			src/reactmicp/solver/reactive_transport_solver_structs.hpp
	M			src/reactmicp/solver/runner.cpp
	A			src/reactmicp/solver/staggers_base/CMakeLists.txt
	M			src/reactmicp/solver/staggers_base/decl.inl
	M			src/reactmicp/solver/timestepper.hpp
	A			src/reactmicp/systems/CMakeLists.txt
	A			src/reactmicp/systems/saturated_react/CMakeLists.txt
	M			src/reactmicp/systems/saturated_react/diffusive_upscaling_stagger.cpp
	M			src/reactmicp/systems/saturated_react/diffusive_upscaling_stagger.hpp
	M			src/reactmicp/systems/saturated_react/equilibrium_stagger.cpp
	M			src/reactmicp/systems/saturated_react/equilibrium_stagger.hpp
	M			src/reactmicp/systems/saturated_react/init_variables.cpp
	M			src/reactmicp/systems/saturated_react/init_variables.hpp
	M			src/reactmicp/systems/saturated_react/kinetic_stagger.cpp
	M			src/reactmicp/systems/saturated_react/kinetic_stagger.hpp
	D			src/reactmicp/systems/saturated_react/react_solver.cpp
	D			src/reactmicp/systems/saturated_react/react_solver.hpp
	M			src/reactmicp/systems/saturated_react/transport_program.cpp
	M			src/reactmicp/systems/saturated_react/transport_program.hpp
	M			src/reactmicp/systems/saturated_react/transport_stagger.cpp
	M			src/reactmicp/systems/saturated_react/transport_stagger.hpp
	M			src/reactmicp/systems/saturated_react/variables.cpp
	M			src/reactmicp/systems/saturated_react/variables.hpp
	A			src/reactmicp/systems/unsaturated/CMakeLists.txt
	M			src/reactmicp/systems/unsaturated/aqueous_equation.cpp
	M			src/reactmicp/systems/unsaturated/aqueous_equation.hpp
	M			src/reactmicp/systems/unsaturated/aqueous_pressure_equation.cpp
	M			src/reactmicp/systems/unsaturated/aqueous_pressure_equation.hpp
	M			src/reactmicp/systems/unsaturated/boundary_conditions.cpp
	M			src/reactmicp/systems/unsaturated/boundary_conditions.hpp
	M			src/reactmicp/systems/unsaturated/equilibrium_stagger.cpp
	M			src/reactmicp/systems/unsaturated/equilibrium_stagger.hpp
	M			src/reactmicp/systems/unsaturated/fv_1dof_equation.hpp
	M			src/reactmicp/systems/unsaturated/fv_1dof_equation.inl
	M			src/reactmicp/systems/unsaturated/pressure_equation.cpp
	M			src/reactmicp/systems/unsaturated/pressure_equation.hpp
	M			src/reactmicp/systems/unsaturated/saturation_equation.cpp
	M			src/reactmicp/systems/unsaturated/saturation_equation.hpp
	M			src/reactmicp/systems/unsaturated/saturation_pressure_equation.cpp
	M			src/reactmicp/systems/unsaturated/saturation_pressure_equation.hpp
	M			src/reactmicp/systems/unsaturated/transport_constraints.hpp
	M			src/reactmicp/systems/unsaturated/transport_stagger.cpp
	M			src/reactmicp/systems/unsaturated/transport_stagger.hpp
	M			src/reactmicp/systems/unsaturated/types_fwd.hpp
	M			src/reactmicp/systems/unsaturated/variables.cpp
	M			src/reactmicp/systems/unsaturated/variables.hpp
	M			src/reactmicp/systems/unsaturated/variables_box.hpp
	M			src/reactmicp/systems/unsaturated/variables_interface.cpp
	M			src/reactmicp/systems/unsaturated/variables_interface.hpp
	M			src/reactmicp/systems/unsaturated/variables_sub.hpp
	V			src/{ → reactmicp}/reactmicp_core.hpp
	V			src/{ → reactmicp}/reactmicp_saturated.hpp
	V			src/{ → reactmicp}/reactmicp_unsaturated.hpp
	M			tests/reactmicp/systems/saturated_react/equilibrium_stagger.cpp
	M			tests/reactmicp/systems/saturated_react/speciation_system.cpp
	M			tests/reactmicp/systems/saturated_react/speciation_system.hpp
	M			tests/reactmicp/systems/saturated_react/transport_program.cpp
	M			tests/reactmicp/systems/unsaturated/aqueous_equation.cpp
	M			tests/reactmicp/systems/unsaturated/aqueous_pressure_equation.cpp
	M			tests/reactmicp/systems/unsaturated/configuration.cpp
	M			tests/reactmicp/systems/unsaturated/equilibrium_stagger.cpp
	M			tests/reactmicp/systems/unsaturated/pressure_equation.cpp
	M			tests/reactmicp/systems/unsaturated/saturation_equation.cpp
	M			tests/reactmicp/systems/unsaturated/saturation_pressure_equation.cpp
	M			tests/reactmicp/systems/unsaturated/transport_stagger.cpp
	M			tests/reactmicp/systems/unsaturated/variables.cpp