Diffusion tamaas fdea6b4ef4a4

Merge branch 'feature/mpi_fft_engine'
fdea6b4ef4a4
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Authored by frerot on Nov 25 2020, 21:35.

Description

Merge branch 'feature/mpi_fft_engine'

Details

Committed

frerot

Nov 25 2020, 21:35

Pushed

frerot

Nov 25 2020, 21:45

Parents

rTAMAAS14f13ab72ad0: adjusting mpi tests
rTAMAAS54aab33e784a: added a function to compute deviatoric of sym tensor fields

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Event Timeline

frerot committed rTAMAASfdea6b4ef4a4: Merge branch 'feature/mpi_fft_engine' (authored by frerot).Nov 25 2020, 21:35

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
14f13ab72ad0	frerot	adjusting mpi tests	Nov 25 2020
f5786e6cbeff	frerot	added experimental mpi warning	Nov 25 2020
945eedca11ad	frerot	added backwards fft 2d tests (counterpart of mpi test)	Nov 25 2020
eeeb65577eff	frerot	turn on flag TAMAAS_USE_PYTHON	Sep 3 2020
671a3a805986	frerot	adjusting tolerance of test FFT1D2Comp	Sep 3 2020
a18819dd25e3	frerot	rename USE_MPI to TAMAAS_USE_MPI	Sep 1 2020
ddb30ba41df9	frerot	Merge branch 'master' into feature/mpi_fft_engine	Sep 1 2020
32f729beef69	frerot	adding a backwards transform test	Aug 6 2020
80617eef9978	frerot	allowing other fftw flags in mpi engine	Aug 6 2020
9d631430e38f	frerot	reducing float test tolerance to 4ε	Aug 6 2020
e51c229537c2	frerot	using global datasize/nbpoints functions when needed	Jul 17 2020
41cf38d51bcf	frerot	testing PolonskyKeerRey in MPI	Jul 17 2020
a7af53db8efa	frerot	addind test for mpi model creation	Jul 16 2020
4921b6ec6a4c	frerot	allowing runs of several mpi routine tests	Jul 16 2020
a9660ef02eed	frerot	proper singleton for mpi::comm::world ensures working seq_guard	Jul 15 2020
9b70d3fba43f	frerot	initializing model with local MPI sizes	Jul 14 2020
fa4fef35f40f	frerot	upgrading dockerfile and jenkinsfile for mpi tests	Jul 12 2020
6f8537513eca	frerot	fixing sequential context manager	Jul 12 2020
0e475acfc2fe	frerot	protected gtests that need to be run in sequential with guard	Jul 12 2020
254daee554df	frerot	added mpi::sequential_guard	Jul 12 2020
0c9ddfa242f4	frerot	added mpi4py as dependency	Jul 12 2020
cb2acaf61c4c	frerot	proper testing of mpi-enabled routines in python	Jul 12 2020
773514f8cf45	frerot	allowing 1D tests to pass	Jul 12 2020
ea6e316a0703	frerot	added a sequential context manager	Jul 12 2020
b8ad8692d3ee	frerot	added some debug logs	Jul 12 2020
6bd2aef6b143	frerot	normalizing backward transforms in FFTWMPIEngine	Jul 12 2020
6819d831b8a4	frerot	removed explicit refs to MPI_COMM_WORLD	Jul 12 2020
136efda36dc9	frerot	fixing concurrent random number generation	Jul 11 2020
2696ba6deb02	frerot	computeFrequencies now takes local sizes as argument	Jul 11 2020
29100a290c77	frerot	fixing backwards mpi transforms	Jul 11 2020
fd5aedbcfb11	frerot	running googletests with mpirun from pytest	Jul 11 2020
621f49e8820d	frerot	passing test for FFTMPI on multicomponents grid	Jul 11 2020
0672d04558bb	frerot	implemented + tested mpi version of FFTEngine::computeFrequencies	Jul 11 2020
2f2124e64da1	frerot	updated googletest version to 1.10	Jul 11 2020
77f5b675fc9d	frerot	testing FFTWMPIEngine	Jul 11 2020
1785d820392d	frerot	mirroring logger behavior with MPI for python wrapper	Jul 11 2020
0defcff64961	frerot	Merge branch 'master' into feature/mpi_fft_engine	Jul 10 2020
35c4836d6e63	frerot	using Partitioner in FFTWMPIEngine	Jul 10 2020
0752a2fdb670	frerot	added polymorphism to FFTEngines	Jul 10 2020
6c2964a9d4d1	frerot	have the same seed for surface gentor across mpi processes	Jul 9 2020
9775a947c07f	frerot	adding tests for partitioner	Jul 9 2020
6a4012ba1c48	frerot	removing unecessary calls to initialize/finalize in examples	Jul 9 2020
1dcf00b3cf42	frerot	ignoring DeprecationWarning with pytest.ini config file	Jul 9 2020
212e9544374c	frerot	removed stray tm.finalize's in tests	Jul 9 2020
ebfd54d08a16	frerot	split fftw mpi interface	Jul 9 2020
4ced5dac6591	frerot	passing communicator to mpi interface instead of assuming WORLD	Jul 9 2020
5b293e6eba23	frerot	tentative implementation of surface generation with mpi	Jul 6 2020
3f746e302ec4	frerot	added mpi reductions to loops	Jul 4 2020
dfa9798ca373	frerot	logging info on root proc	Jul 2 2020
8facf8e0cda6	frerot	added FFTMPIEngine	Jul 2 2020

Changes (75)

		Path
M		Dockerfile
M		Jenkinsfile
M		SConstruct
M		python/SConscript
M		python/setup.py.in
M		python/wrap/core.cpp
M		python/wrap/surface.cpp
M		site_scons/detect.py
M		src/SConscript
M		src/bem/bem_grid.hh
M		src/bem/bem_interface.hh
M		src/core/array.hh
V		src/core/{fft_engine.cpp → fftw_engine.cpp}
M		src/core/fft_engine.hh
V		src/core/{fftw_engine.cpp ← fft_engine.cpp}
A		src/core/fftw_engine.hh
M		src/core/fftw_interface.hh
M		src/core/grid_base.hh
M		src/core/grid_view.hh
M		src/core/logger.cpp
M		src/core/logger.hh
M		src/core/loop.hh
M		src/core/static_types.hh
M		src/core/statistics.cpp
M		src/core/statistics.hh
M		src/core/surface_statistics.cpp
M		src/core/tamaas.cpp
M		src/model/elastic_functional.cpp
M		src/model/elasto_plastic/residual.cpp
P		src/model/integral_operator.cpp Copied from src/core/loop.cpp
M		src/model/integral_operator.hh
M		src/model/model.hh
M		src/model/model_template.cpp
M		src/model/model_template.hh
M		src/model/volume_potential.cpp
M		src/model/volume_potential.hh
M		src/model/westergaard.cpp
M		src/model/westergaard.hh
A	(dir)	src/mpi/
A		src/mpi/fftw_mpi_engine.cpp
P		src/mpi/fftw_mpi_engine.hh Copied from src/surface/filter.hh
A		src/mpi/fftw_mpi_interface.hh
P		src/mpi/mpi_interface.cpp Copied from src/core/loop.cpp
A		src/mpi/mpi_interface.hh
A		src/mpi/partitioner.hh
M		src/solvers/kato_saturated.cpp
M		src/solvers/polonsky_keer_rey.cpp
M		src/surface/surface_generator.cpp
M		src/surface/surface_generator.hh
M		src/surface/surface_generator_filter.cpp
M		src/surface/surface_generator_filter.hh
M		src/surface/surface_generator_filter_fft.hh
M		src/surface/surface_generator_random_phase.cpp
M		tests/SConscript
M		tests/conftest.py
A		tests/mpi_routines.py
A		tests/pytest.ini
M		tests/tamaas_gtest_main.cc
M		tests/test.hh
M		tests/test_autocorrelation.py
M		tests/test_bem_grid.py
M		tests/test_dumper.py
M		tests/test_fft.cpp
M		tests/test_fftfreq.cpp
M		tests/test_grid.cpp
M		tests/test_gtest.py
M		tests/test_hertz_disp.py
M		tests/test_integration.cpp
M		tests/test_loop.cpp
M		tests/test_model.cpp
A		tests/test_mpi.cpp
A		tests/test_mpi_routines.py
M		tests/test_static_types.cpp
M		tests/test_tangential.py
M	(sub)	third-party/googletest