Nanopore-tools/Plottingmaster
Nanopore-tools/Plotting
master
History Graph
History Graph
| Commit | Author | Details | Committed | |||
|---|---|---|---|---|---|---|
| 3bc077ccfde7 | thakur | update | Jul 8 2022 | |||
| 270d85039163 | thakur | Update: normalizing traces for comparison | Mar 18 2021 | |||
| bda10eb895f3 | thakur | For plotting multiple IVs from Axopatch data | Feb 12 2021 | |||
| a4b7f472c742 | thakur | Fitting and cleaning options added | Feb 12 2021 | |||
| c2870d6b9230 | deen | add lowpass to getdata | Aug 20 2020 | |||
| f218b5a0f5a3 | thakur | Added more plotting features: voltage-time, conductance-time, and current-time… | Jun 9 2020 | |||
| 2d43f21d943d | thakur | Extracts a part of trace from a raw file | Feb 28 2020 | |||
| 223556b72fdc | thakur | Extracts a part of trace from a raw file | Feb 28 2020 | |||
| 9d5adb07ce5b | deen | Added changes to load OPT files from Axopatch (Manunu lab) | Dec 23 2019 | |||
| 35975138e060 | deen | forgot to change variable to variable_ | Nov 12 2019 | |||
| f233aca7ab9e | deen | Modified Plotting, should show legend now | Nov 12 2019 | |||
| c1e5ccac9bf8 | deen | Added print saving | Nov 12 2019 | |||
| fb841ce0f885 | deen | Changed histogram color to fill_color | Nov 12 2019 | |||
| 086bb13045e3 | deen | Moved old PlotGTauVoltage to EventPlotsOld.py Added new function to save… | Nov 12 2019 | |||
| 879b0c898299 | deen | Changed colors of histogram plot | Nov 12 2019 | |||
| aed240124e06 | deen | Modified GetAllvoltages, the list is sorted and converted to a list, rather… | Nov 11 2019 | |||
| b6f82fe2cc56 | deen | Minor fixes. Didn't show IV plot. Incorrect ylabel PlotGTau | Oct 30 2019 | |||
| 7ee1a7bfbad8 | deen | Fixed normalization.... | Sep 24 2019 | |||
| ccc4633b3b86 | deen | incorrect sign........ | Sep 24 2019 | |||
| 132c8862bede | deen | Bugfix when no values in x and y while plotting log histogram | Sep 24 2019 | |||
| 4978d2d2bd4a | deen | Added log option for histogram | Sep 24 2019 | |||
| cfa8ffed678c | deen | Added showNonFitted to PlotGTau | Sep 24 2019 | |||
| 752d85005b4c | deen | Fixed Lowpass of current trace | Sep 24 2019 | |||
| dc1255d0a2c8 | deen | Added LowPassAndResample | Sep 24 2019 | |||
| c0215aaf1eb6 | thakur | Add voltagelimits | Sep 18 2019 | |||
| 80b74d7635bd | thakur | bugfix | Sep 18 2019 | |||
| 9365ab63dee7 | thakur | convert rgb color to hex colors | Sep 18 2019 | |||
| 9b26f9c5b852 | deen/thakur | Changed colors to seaborn color_palette, number of colors = number of voltages | Sep 18 2019 | |||
| 2e077d9d90d8 | thakur | changed SaveG to SavePlot | Sep 12 2019 | |||
| 4ce46a6e6ab2 | deen | added return value | Aug 7 2019 | |||
| 9eba0a7d13c9 | deen | quick fix | Aug 7 2019 | |||
| 5873b18544cf | deen | space | Aug 7 2019 | |||
| 34e59e08e093 | deen | fix | Aug 7 2019 | |||
| 72bad964fbed | deen | Added holoviews histogram plotting | Aug 6 2019 | |||
| b28ac35dd7e5 | deen | x-axis log | Jul 23 2019 | |||
| 1c201b3100e9 | deen | Changed to check for string | Jul 23 2019 | |||
| b00190c1d228 | deen | Bugfix | Jul 23 2019 | |||
| 81286bc0be01 | deen | PSD plotting | Jul 23 2019 | |||
| 62e380e32bf3 | deen | Moved sorting | Jun 12 2019 | |||
| 6b675b7de877 | deen | Minor cosmetic changes | Jun 12 2019 | |||
| 3b8380e96bc8 | deen | Minor changes for plotting Bokeh in Jupyter | Jun 12 2019 | |||
| e377aa3ddf2c | deen | sort Voltages | Jun 12 2019 | |||
| aeb2d8e44532 | deen | changed variable name | Jun 12 2019 | |||
| 90792c965edb | deen | disabled nonfitted events by default | Jun 12 2019 | |||
| 3b21f3fa5b7a | deen | Plotting with Currentdrop | Jun 11 2019 | |||
| 0a68ff931638 | deen | Added line in EventPlots for plotting in Jupyter Notebook | Jun 11 2019 | |||
| f3ada36a22f3 | deen/thakur | amazing edits and voltage based plotting by Jochem | Apr 26 2019 | |||
| 58aa40228148 | thakur | Added lines for plotting on Mac OS X | Apr 2 2019 | |||
| 47a96ece775c | deen | import Range1D | Mar 22 2019 | |||
| bac909099f2c | deen | xlim and ylim on figure | Mar 22 2019 | |||
| 60231057e4c9 | deen | added limits to the function | Mar 22 2019 | |||
| b312fafccb7f | deen | bugfix | Mar 13 2019 | |||
| 930e44a351de | Axopatch | Open multiple files | Mar 13 2019 | |||
| 819291dbdcac | Axopatch | Slight modification | Feb 25 2019 | |||
| 32cc2a9272f4 | Axopatch | Merge remote-tracking branch 'origin/master' | Jan 28 2019 | |||
| d37dbe352a43 | Axopatch | for PSDs | Jan 28 2019 | |||
| 321317e9b140 | schneuwly | more docstrings | Jan 27 2019 | |||
| 475f5761a285 | deen | Simplified version of GTau plot using Bokeh | Jan 16 2019 | |||
| ac035c18794d | deen | Added PSF plotting function | Jan 14 2019 | |||
| 4992f8975ef8 | deen | Fix plotting of data. Use Math.abs (capital letter for javascript!). Also shows… | Dec 12 2018 | |||
| 2ba93daf2eed | Axopatch | absolute value of tick | Dec 12 2018 | |||
| c6b661d2d480 | Axopatch | Added function GetParameters() to see default parameters Changed… | Dec 11 2018 | |||
| 3e9d528dfa0a | deen | added back plotgui.py | Dec 6 2018 | |||
| 4e1051e88fcb | deen | Removed cutting of FullTrace | Dec 5 2018 | |||
| 42aa378d194c | deen | Implemented plotting in Bokeh | Dec 5 2018 | |||
| ce6047fe7825 | deen | Added Plotting function for simple trace plot | Dec 5 2018 | |||
| f6dac0696a44 | deen | Moved Loading data functions to new script, for easier access. Moved unused… | Dec 5 2018 | |||
| c174859d5b62 | deen | Cleaning up of git | Dec 5 2018 | |||
| acffb6d8ec58 | deen | Merge remote-tracking branch 'origin/master' | Dec 4 2018 | |||
| ecfb78678b73 | deen | changed check to not 0 | Dec 4 2018 | |||
| 2bb51f0f8cee | thakur/Axopatch | Added log scale function | Nov 29 2018 | |||
| 72d130d353ae | deen | Added verbose options to most load functions and event detection and IV making. | Nov 6 2018 | |||
| 52897e16647e | deen | Added voltage in plot | Sep 26 2018 | |||
| 3661c2d7932e | deen | Added titlte | Sep 26 2018 | |||
| 62be1090664b | deen | Minor bugfix for plotting if not fitted | Sep 26 2018 | |||
| d7388e3b03c0 | deen | Bugfix for opening data | Sep 26 2018 | |||
| 23cadb544365 | deen | fixed plotting of events when clicked. Added option to show original trace with… | Sep 26 2018 | |||
| a8388ba67ded | deen | Changed name from Nanoporeplots to EventPlots. Added interactive plot, Split… | Sep 26 2018 | |||
| 933b5123747b | deen | Added interactive G-tau plot. Shows only CUSUM fitted events for now (with… | Sep 25 2018 | |||
| 4201830c1e25 | Jochem | Proper axis formatting. | Aug 29 2018 | |||
| 9fe532e46cdb | Jochem | Linked PlotI_Tau axes. Fixed minor bug in background traces | Aug 29 2018 | |||
| 068e0fffdbda | Jochem | Resolved conflicts | Aug 28 2018 | |||
| 50b29ee1df0d | Jochem | flipped current drop and minor changes in plotting | Aug 28 2018 | |||
| 8c4db3437563 | thakur | check | Aug 21 2018 | |||
| 5ad52fea305a | thakur | check | Aug 21 2018 | |||
| 8f67112dacf4 | thakur | Did follwoing things:- 1. Added color and marker function to improve aesthetics… | Aug 20 2018 | |||
| 3d5d95261315 | thakur | Merge remote-tracking branch 'origin/master' | Aug 17 2018 | |||
| 61bf8183c0d0 | thakur | minor bugfix in case current is nan | Aug 17 2018 | |||
| 59fd72e1c808 | Jochem | added Plotting formatter | Aug 17 2018 | |||
| b69207051934 | grafm/Axopatch | Made Useless changes to IV plotting | Aug 14 2018 | |||
| 2f2bafc18cf4 | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Aug 7 2018 | |||
| 338200479f6d | Microtubulus <michael.graf> | Added Event Generator, for those that don't get events... | Aug 7 2018 | |||
| 52683b1c814c | Jochem | Merge branch 'master' of ssh://c4science.ch/diffusion/5484/nanopore-tools | Jul 31 2018 | |||
| 31eb273b9a5b | Jochem | Basic EventDetection functions, Classes for event detection and plotting… | Jul 31 2018 | |||
| e0388d3b9a7b | Microtubulus <michael.graf> | Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools | Jul 26 2018 | |||
| 6be965376176 | Jochem | Moved plotting files to new directory | Jul 20 2018 |
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