Diffusion Nanopore Tools (master) History

History
master3bc077ccfde7ca127851cb5…

Jul 8 2022

update
3bc077ccfde7
·branch: master
·thakur on Jul 8 2022, 16:40.
update
aa9ceb3fd32d
·thakur on Jul 8 2022, 14:53.

Mar 21 2022

Few tweaks to detect files with'.db' extension.
a9a85a0ec07d
·thakur on Mar 21 2022, 18:09.

Mar 18 2021

Update: normalizing traces for comparison
270d85039163
·thakur on Mar 18 2021, 14:47.

Feb 23 2021

IV plotting
b98bf7969b99
·thakur on Feb 23 2021, 14:21.

Feb 12 2021

For plotting multiple IVs from Axopatch data
bda10eb895f3
·thakur on Feb 12 2021, 17:25.
Fitting and cleaning options added
a4b7f472c742
·thakur on Feb 12 2021, 17:24.

Feb 4 2021

Fitting and cleaning options added
505b82b68186
·thakur on Feb 4 2021, 15:27.

Aug 20 2020

add lowpass to getdata
c2870d6b9230
·deen on Aug 20 2020, 09:47.

Jun 9 2020

Added more plotting features: voltage-time, conductance-time, and current-time…
f218b5a0f5a3
·thakur on Jun 9 2020, 09:17.

Feb 28 2020

Extracts a part of trace from a raw file
2d43f21d943d
·thakur on Feb 28 2020, 15:54.
Extracts a part of trace from a raw file
223556b72fdc
·thakur on Feb 28 2020, 15:49.

Feb 12 2020

Merge remote-tracking branch 'origin/master'
151c5a45ae59
·thakur on Feb 12 2020, 16:49.
Saves the scatter plot figures as vectors
77863b33332e
·thakur on Feb 12 2020, 16:49.

Dec 23 2019

Added changes to load OPT files from Axopatch (Manunu lab)
9d5adb07ce5b
·deen on Dec 23 2019, 12:57.

Nov 12 2019

forgot to change variable to variable_
35975138e060
·deen on Nov 12 2019, 14:22.
Modified Plotting, should show legend now
f233aca7ab9e
·deen on Nov 12 2019, 14:21.
Added print saving
c1e5ccac9bf8
·deen on Nov 12 2019, 14:05.
Changed histogram color to fill_color
fb841ce0f885
·deen on Nov 12 2019, 13:36.
Moved old PlotGTauVoltage to EventPlotsOld.py Added new function to save…
086bb13045e3
·deen on Nov 12 2019, 13:05.
Changed colors of histogram plot
879b0c898299
·deen on Nov 12 2019, 11:04.

Nov 11 2019

Modified GetAllvoltages, the list is sorted and converted to a list, rather…
aed240124e06
·deen on Nov 11 2019, 14:50.

Oct 30 2019

Minor fixes. Didn't show IV plot. Incorrect ylabel PlotGTau
b6f82fe2cc56
·deen on Oct 30 2019, 14:28.

Oct 4 2019

translocation statistics
7b756b3afa8e
·thakur on Oct 4 2019, 11:20.

Sep 25 2019

Host on github instead
124d8e2ea7d8
·deen on Sep 25 2019, 07:38.

Sep 24 2019

Added example jupyter notebook file
225f919a89a6
·deen on Sep 24 2019, 17:18.
Fixed normalization....
7ee1a7bfbad8
·deen on Sep 24 2019, 17:10.
incorrect sign........
ccc4633b3b86
·deen on Sep 24 2019, 16:37.
Bugfix when no values in x and y while plotting log histogram
132c8862bede
·deen on Sep 24 2019, 16:31.
Added log option for histogram
4978d2d2bd4a
·deen on Sep 24 2019, 15:24.
Added showNonFitted to PlotGTau
cfa8ffed678c
·deen on Sep 24 2019, 14:10.
Fixed Lowpass of current trace
752d85005b4c
·deen on Sep 24 2019, 14:06.
Added LowPassAndResample
dc1255d0a2c8
·deen on Sep 24 2019, 13:57.
Merge remote-tracking branch 'origin/master'
a5527b525d73
·deen on Sep 24 2019, 11:31.
Disable printing filename
4724adc4f53c
·deen on Sep 24 2019, 11:31.

Sep 18 2019

Add voltagelimits
c0215aaf1eb6
·thakur on Sep 18 2019, 10:43.
bugfix
80b74d7635bd
·thakur on Sep 18 2019, 10:39.
convert rgb color to hex colors
9365ab63dee7
·thakur on Sep 18 2019, 10:27.
Changed colors to seaborn color_palette, number of colors = number of voltages
9b26f9c5b852
·deen / thakur on Sep 18 2019, 10:20.

Sep 12 2019

changed SaveG to SavePlot
2e077d9d90d8
·thakur on Sep 12 2019, 14:57.
testing commit
c4f614cd1e61
·thakur on Sep 12 2019, 14:24.
Merge remote-tracking branch 'origin/master'
d54d9e829cb4
·thakur on Sep 12 2019, 14:22.
TLs statistics updated
2b3672ed1749
·thakur on Sep 12 2019, 14:10.

Aug 7 2019

added return value
4ce46a6e6ab2
·deen on Aug 7 2019, 11:48.
quick fix
9eba0a7d13c9
·deen on Aug 7 2019, 11:46.
space
5873b18544cf
·deen on Aug 7 2019, 11:43.
fix
34e59e08e093
·deen on Aug 7 2019, 11:40.

Aug 6 2019

Added holoviews histogram plotting
72bad964fbed
·deen on Aug 6 2019, 12:11.

Jul 23 2019

x-axis log
b28ac35dd7e5
·deen on Jul 23 2019, 13:44.
Changed to check for string
1c201b3100e9
·deen on Jul 23 2019, 13:43.
Bugfix
b00190c1d228
·deen on Jul 23 2019, 13:32.
PSD plotting
81286bc0be01
·deen on Jul 23 2019, 13:18.

Jul 22 2019

bugfix
2f28106ada13
·deen on Jul 22 2019, 14:03.

Jul 15 2019

merge
c423162352c9
·deen on Jul 15 2019, 14:25.
Added relative delta for
958801e7521f
·deen on Jul 15 2019, 14:20.
Merge remote-tracking branch 'origin/Development-of-Analysis-GUI' into…
c92f4f7241ef
·deen on Jul 15 2019, 14:18.
Added check for small size
0f9eaf682370
·deen on Jul 15 2019, 14:17.

Jun 28 2019

Fixed the data loading, when no filename is specified.
944ee3a6c923
·Microtubulus <michael.graf> on Jun 28 2019, 10:08.

Jun 26 2019

I made a dirty fix to the IV function since it couldn't plot anything recorded…
926aeb25e4e0
·Microtubulus <michael.graf> on Jun 26 2019, 14:57.

Jun 17 2019

Implemented low-pass options for the whole trace display to speed things up
5db45a4bb67d
·Microtubulus <michael.graf> on Jun 17 2019, 14:34.
The plot that shows the event location within the whole trace is now scalable…
a59f7d7ae469
·Microtubulus <michael.graf> on Jun 17 2019, 13:35.

Jun 14 2019

fixed merge
9e38a6aefeb4
·Microtubulus <michael.graf> on Jun 14 2019, 16:28.
Merge branch 'Development-of-Analysis-GUI' of https://c4science.
e1fb93801dfb
·Microtubulus <michael.graf> on Jun 14 2019, 16:22.
Probably nearly finished
1b5083aba95d
·Microtubulus <michael.graf> on Jun 14 2019, 16:02.
Merge remote-tracking branch 'origin/Development-of-Analysis-GUI' into…
f283e2d1368a
·deen on Jun 14 2019, 15:53.
Analysis UI created
abcdb00c948e
·deen on Jun 14 2019, 15:52.
latest
992748feefcd
·Microtubulus <michael.graf> on Jun 14 2019, 11:19.
Merge branch 'master' into Development-of-Analysis-GUI
c60e9dea179e
·Microtubulus <michael.graf> on Jun 14 2019, 11:04.
Merge branch 'Development-of-Analysis-GUI' of https://c4science.
f905f230b58c
·Microtubulus <michael.graf> on Jun 14 2019, 09:24.

Jun 13 2019

Initial gui for analysis plotting
deb2d51778ee
·deen on Jun 13 2019, 17:25.
Event detector is now running on the selected files. All the files have a…
8574c2881649
·Microtubulus <michael.graf> on Jun 13 2019, 17:07.
Plot axes fixes. Other layout fixes.
bd4fb7c71584
·Microtubulus <michael.graf> on Jun 13 2019, 13:05.

Jun 12 2019

UI elements nearly finished. Plotting implemented. We will need to start to…
ea7575e2c37f
·Microtubulus <michael.graf> on Jun 12 2019, 17:38.
Moved sorting
62e380e32bf3
·deen on Jun 12 2019, 16:19.
Minor cosmetic changes
6b675b7de877
·deen on Jun 12 2019, 16:10.
Modified MakeIndividualIVs
e7f6ab17a17f
·deen on Jun 12 2019, 15:36.
Minor changes for plotting Bokeh in Jupyter
3b8380e96bc8
·deen on Jun 12 2019, 15:10.
sort Voltages
e377aa3ddf2c
·deen on Jun 12 2019, 14:58.
changed variable name
aeb2d8e44532
·deen on Jun 12 2019, 14:57.
EventDetectorUI: file input with duplicate check. Filter for .dat and .log.
c46c0a63865b
·Microtubulus <michael.graf> on Jun 12 2019, 14:48.
Jochem's CUSUM eventPlots fix + UI files
b22aa27f135a
·Microtubulus <michael.graf> on Jun 12 2019, 13:23.
Rudimentary template for the UI.
0c8ace2b9651
·Microtubulus <michael.graf> on Jun 12 2019, 11:36.
Merge remote-tracking branch 'origin/master'
34c4670c4cf8
·deen on Jun 12 2019, 11:11.
disabled nonfitted events by default
90792c965edb
·deen on Jun 12 2019, 11:11.
I made some changes to the mainplotgui. Mainly coloring, so that voltages…
850d6bde662b
·Microtubulus <michael.graf> on Jun 12 2019, 10:50.

Jun 11 2019

Added relative delta for CUSUM fitting
f0ed91619c81
·deen on Jun 11 2019, 14:07.
Added more printing for debugging
5708b27f21a2
·deen on Jun 11 2019, 11:36.
Plotting with Currentdrop
3b21f3fa5b7a
·deen on Jun 11 2019, 11:26.
Added line in EventPlots for plotting in Jupyter Notebook
0a68ff931638
·deen on Jun 11 2019, 09:40.
Changed type of CUSUM fitted events to 'CUSUM'
96d8adf9e29d
·deen on Jun 11 2019, 09:39.
changed eventLengthCUSUM assignation
3e86162b8769
·deen on Jun 11 2019, 09:36.
CUSUM needs at least 2 levels, not 3
0456ec9b066d
·deen on Jun 11 2019, 09:34.
Reorganized so event adding is more clear
6546e6f62eaa
·deen on Jun 11 2019, 09:32.
modified printing
1c05b36cc2be
·deen on Jun 11 2019, 09:27.
Minor changes in printing
46a6544c0236
·deen on Jun 11 2019, 09:17.
Added saving of currentDrop for impulse
34ac37040d47
·deen on Jun 11 2019, 09:07.
modified verboseLevel and added check for integer
5ffc7919fc39
·deen on Jun 11 2019, 09:02.
bugfix
c21afa3fedea
·deen on Jun 11 2019, 08:58.
modified check
f65c960d7cdc
·deen on Jun 11 2019, 08:57.
Modified coefficients
7dfe94a20c40
·deen on Jun 11 2019, 08:50.

Historymaster3bc077ccfde7ca127851cb5…

Jul 8 2022

Mar 21 2022

Mar 18 2021

Feb 23 2021

Feb 12 2021

Feb 4 2021

Aug 20 2020

Jun 9 2020

Feb 28 2020

Feb 12 2020

Dec 23 2019

Nov 12 2019

Nov 11 2019

Oct 30 2019

Oct 4 2019

Sep 25 2019

Sep 24 2019

Sep 18 2019

Sep 12 2019

Aug 7 2019

Aug 6 2019

Jul 23 2019

Jul 22 2019

Jul 15 2019

Jun 28 2019

Jun 26 2019

Jun 17 2019

Jun 14 2019

Jun 13 2019

Jun 12 2019

Jun 11 2019

History
master3bc077ccfde7ca127851cb5…