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History Graph
History Graph
Commit | Author | Details | Committed | ||||
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5c2beaaea43f | blanchoud | Merge branch 'master' of ssh://c4science.ch/source/SiBoRG | Dec 20 2021 | ||||
336752f9b1e7 | Simon Blanchoud <Simon Blanchoud> | added a pause at the end | Dec 20 2021 | ||||
98d5106ad21b | blanchoud | Merge branch 'master' of ssh://c4science.ch/source/SiBoRG | Dec 20 2021 | ||||
576ebcad9a53 | blanchoud | in vitro file | Dec 20 2021 | ||||
b2b5e827b06e | blanchoud | Inverted the display of the figures | Dec 20 2021 | ||||
b83a89f7c134 | Simon Blanchoud <Simon Blanchoud> | New file to produce the figures from the in vitro review, and tried to handle… | Dec 20 2021 | ||||
92fe717be6e5 | Simon Blanchoud <Simon Blanchoud> | Flipped the y axis to match Fiji | Dec 7 2021 | ||||
3f8987067f7f | Simon Blanchoud <Simon Blanchoud> | bounds is not a valid function anymore | Dec 7 2021 | ||||
e09b16e88a04 | Simon Blanchoud <Simon Blanchoud> | A convexhull function issue | Dec 7 2021 | ||||
c56bf49af761 | Simon Blanchoud <Simon Blanchoud> | Fixed the istallation file which was for Matlab it seems | Dec 7 2021 | ||||
5e98082edd78 | Simon Blanchoud <Simon Blanchoud> | Adapted some thresholds and the local directory to run on multiple files on the… | Dec 7 2021 | ||||
1c9384cc6d5d | Simon Blanchoud <Simon Blanchoud> | Fully working version, waiting further testing by the user | Dec 6 2021 | ||||
0601f5112d5d | Simon Blanchoud <Simon Blanchoud> | Included a script to parse Nathalie segmentations | Dec 3 2021 | ||||
9aabe57898a4 | Simon Blanchoud <Simon Blanchoud> | Added a condition for timelapses to span over consecutive months | Oct 19 2021 | ||||
3de6ff57f58f | Simon Blanchoud <Simon Blanchoud> | Removed all the Exif attempts | Sep 13 2021 | ||||
247e3d9cbce4 | Simon Blanchoud <Simon Blanchoud> | PIL | Sep 13 2021 | ||||
ad743efb0b68 | Simon Blanchoud <Simon Blanchoud> | Import | Sep 13 2021 | ||||
71994775abe6 | Simon Blanchoud <Simon Blanchoud> | Upgrade to newer version of PIL | Sep 13 2021 | ||||
959f133d82dc | Simon Blanchoud <Simon Blanchoud> | Added code to analyze the system migration data | Sep 13 2021 | ||||
93cf36de6a93 | Simon Blanchoud <Simon Blanchoud> | Added faster movies too | Aug 10 2021 | ||||
dbb5add19cba | Simon Blanchoud | Improved the TL assembly, fixed some potential missuse and provide more… | Aug 9 2021 | ||||
8c81c2eaa20f | Simon Blanchoud | Updated the desktop link | Aug 5 2021 | ||||
692991bcd149 | Simon Blanchoud | Cannot use the terminal emulator over ssh | Aug 4 2021 | ||||
978bce89e190 | Simon Blanchoud <Simon Blanchoud> | Corrected the TL assembly script to run from a GUI | Aug 4 2021 | ||||
1cd0ba44e709 | Simon Blanchoud <Simon Blanchoud> | Deleted an early exit | Aug 4 2021 | ||||
2cf787858c26 | Simon Blanchoud <Simon Blanchoud> | Updates for the husbandry paper and for the TL assembler | Aug 4 2021 | ||||
24e659740c26 | Simon Blanchoud <Simon Blanchoud> | Adapted the code to include the analysis of the microbiome. Some modifications… | Jul 6 2021 | ||||
d54dc39dc74e | Simon Blanchoud <Simon Blanchoud> | First version of analysis of proteomics data | May 19 2021 | ||||
05bc47c66f52 | Simon Blanchoud <Simon Blanchoud> | Updated the husbandry script and included the script we use for generating moies | Apr 19 2021 | ||||
e73be26c9b73 | Simon Blanchoud <Simon Blanchoud> | Updated DB processing and display to publication on husbandry. | Feb 17 2021 | ||||
f2f38a8307ea | Simon Blanchoud <Simon Blanchoud> | Additional figures for the transfusion manuscript | Feb 15 2021 | ||||
9745d59b6646 | Simon Blanchoud <Simon Blanchoud> | Scripts to produce the figures for our MiMB manuscript | Feb 5 2021 | ||||
6e2dd9f9847f | Simon Blanchoud <Simon Blanchoud> | adding script for micro-transfusion | Jan 11 2021 | ||||
08949f353c6a | Simon Blanchoud <Simon Blanchoud> | Wrote a script to analyze the data of the husbandry system, combining apex, sci… | Dec 9 2020 | ||||
ede04d01850c | Simon Blanchoud <Simon Blanchoud> | Minor bug for Apex and new function to parse SciNote data | Dec 1 2020 | ||||
081965ba1935 | Simon Blanchoud <Simon Blanchoud> | Added a function to pool all Apex data into CSV files | Nov 30 2020 | ||||
3855351102b4 | Simon Blanchoud <Simon Blanchoud> | Plotting movement and speed statistics with the possibility to expot the slide | Nov 12 2020 | ||||
c7fa459777c5 | Simon Blanchoud <Simon Blanchoud> | Seemingly well aligned slides using projection mapping | Nov 11 2020 | ||||
273481ed69b2 | Simon Blanchoud <Simon Blanchoud> | Added functionalities to process TrackMate XML and ImageJ data, as well as… | Nov 11 2020 | ||||
4a29746e3b44 | Simon Blanchoud <Simon Blanchoud> | Processing of Lionel data and new scripts | Aug 12 2020 | ||||
c85ab7eec342 | Simon Blanchoud <Simon Blanchoud> | Added a script to parse a characteristics table to classify species | Jun 24 2020 | ||||
255d5596bca8 | Simon Blanchoud <Simon Blanchoud> | Filtered out unwanted files, fixed the snapshot by removing all controls and… | Nov 7 2019 | ||||
96e7368ff315 | Simon Blanchoud <Simon Blanchoud> | Transfer of files from leachi_flow for colony_census to work. Export to SVG is… | Nov 5 2019 | ||||
fafe7ad676d7 | Simon Blanchoud <Simon Blanchoud> | First commint to transfer everything to SiBoRG | Nov 4 2019 |
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