Diffusion Simon Botrylloides Regeneration Group (master) History

History
master3aa2120ee410dfc400135a7…

Dec 30 2021

Path for the asccrunch
3aa2120ee410
·branch: master
·Simon Blanchoud <Simon Blanchoud> on Dec 30 2021, 13:48.
Updated the code to compute the various statistics betweent the features
dd347e3e8126
·Simon Blanchoud <Simon Blanchoud> on Dec 30 2021, 13:48.

Dec 29 2021

Increased the distance between ampullae
ff484d8eb00a
·blanchoud on Dec 29 2021, 10:38.

Dec 21 2021

Added a selective display feature to prevent clotting of the screen
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·blanchoud on Dec 21 2021, 12:52.

Dec 20 2021

Merge branch 'master' of ssh://c4science.ch/source/SiBoRG
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·blanchoud on Dec 20 2021, 11:50.
added a pause at the end
336752f9b1e7
·Simon Blanchoud <Simon Blanchoud> on Dec 20 2021, 11:49.
Merge branch 'master' of ssh://c4science.ch/source/SiBoRG
98d5106ad21b
·blanchoud on Dec 20 2021, 11:22.
in vitro file
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·blanchoud on Dec 20 2021, 11:11.
Inverted the display of the figures
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·blanchoud on Dec 20 2021, 11:09.
New file to produce the figures from the in vitro review, and tried to handle…
b83a89f7c134
·Simon Blanchoud <Simon Blanchoud> on Dec 20 2021, 11:07.

Dec 7 2021

Flipped the y axis to match Fiji
92fe717be6e5
·Simon Blanchoud <Simon Blanchoud> on Dec 7 2021, 12:10.
bounds is not a valid function anymore
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·Simon Blanchoud <Simon Blanchoud> on Dec 7 2021, 10:11.
A convexhull function issue
e09b16e88a04
·Simon Blanchoud <Simon Blanchoud> on Dec 7 2021, 10:01.
Fixed the istallation file which was for Matlab it seems
c56bf49af761
·Simon Blanchoud <Simon Blanchoud> on Dec 7 2021, 09:44.
Adapted some thresholds and the local directory to run on multiple files on the…
5e98082edd78
·Simon Blanchoud <Simon Blanchoud> on Dec 7 2021, 09:31.

Dec 6 2021

Fully working version, waiting further testing by the user
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·Simon Blanchoud <Simon Blanchoud> on Dec 6 2021, 22:10.

Dec 3 2021

Included a script to parse Nathalie segmentations
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·Simon Blanchoud <Simon Blanchoud> on Dec 3 2021, 15:26.

Oct 19 2021

Added a condition for timelapses to span over consecutive months
9aabe57898a4
·Simon Blanchoud <Simon Blanchoud> on Oct 19 2021, 15:05.

Sep 13 2021

Removed all the Exif attempts
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·Simon Blanchoud <Simon Blanchoud> on Sep 13 2021, 15:38.
PIL
247e3d9cbce4
·Simon Blanchoud <Simon Blanchoud> on Sep 13 2021, 15:25.
Import
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·Simon Blanchoud <Simon Blanchoud> on Sep 13 2021, 15:22.
Upgrade to newer version of PIL
71994775abe6
·Simon Blanchoud <Simon Blanchoud> on Sep 13 2021, 15:19.
Added code to analyze the system migration data
959f133d82dc
·Simon Blanchoud <Simon Blanchoud> on Sep 13 2021, 14:55.

Aug 10 2021

Added faster movies too
93cf36de6a93
·Simon Blanchoud <Simon Blanchoud> on Aug 10 2021, 12:09.

Aug 9 2021

Improved the TL assembly, fixed some potential missuse and provide more…
dbb5add19cba
·Simon Blanchoud on Aug 9 2021, 15:17.

Aug 5 2021

Updated the desktop link
8c81c2eaa20f
·Simon Blanchoud on Aug 5 2021, 10:58.

Aug 4 2021

Cannot use the terminal emulator over ssh
692991bcd149
·Simon Blanchoud on Aug 4 2021, 19:47.
Corrected the TL assembly script to run from a GUI
978bce89e190
·Simon Blanchoud <Simon Blanchoud> on Aug 4 2021, 19:38.
Deleted an early exit
1cd0ba44e709
·Simon Blanchoud <Simon Blanchoud> on Aug 4 2021, 18:55.
Updates for the husbandry paper and for the TL assembler
2cf787858c26
·Simon Blanchoud <Simon Blanchoud> on Aug 4 2021, 16:37.

Jul 6 2021

Adapted the code to include the analysis of the microbiome. Some modifications…
24e659740c26
·Simon Blanchoud <Simon Blanchoud> on Jul 6 2021, 00:54.

May 19 2021

First version of analysis of proteomics data
d54dc39dc74e
·Simon Blanchoud <Simon Blanchoud> on May 19 2021, 00:16.

Apr 19 2021

Updated the husbandry script and included the script we use for generating moies
05bc47c66f52
·Simon Blanchoud <Simon Blanchoud> on Apr 19 2021, 12:13.

Feb 17 2021

Updated DB processing and display to publication on husbandry.
e73be26c9b73
·Simon Blanchoud <Simon Blanchoud> on Feb 17 2021, 14:32.

Feb 15 2021

Additional figures for the transfusion manuscript
f2f38a8307ea
·Simon Blanchoud <Simon Blanchoud> on Feb 15 2021, 11:13.

Feb 5 2021

Scripts to produce the figures for our MiMB manuscript
9745d59b6646
·Simon Blanchoud <Simon Blanchoud> on Feb 5 2021, 16:35.

Jan 11 2021

adding script for micro-transfusion
6e2dd9f9847f
·Simon Blanchoud <Simon Blanchoud> on Jan 11 2021, 07:50.

Dec 9 2020

Wrote a script to analyze the data of the husbandry system, combining apex, sci…
08949f353c6a
·Simon Blanchoud <Simon Blanchoud> on Dec 9 2020, 23:14.

Dec 1 2020

Minor bug for Apex and new function to parse SciNote data
ede04d01850c
·Simon Blanchoud <Simon Blanchoud> on Dec 1 2020, 11:40.

Nov 30 2020

Added a function to pool all Apex data into CSV files
081965ba1935
·Simon Blanchoud <Simon Blanchoud> on Nov 30 2020, 15:47.

Nov 12 2020

Plotting movement and speed statistics with the possibility to expot the slide
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·Simon Blanchoud <Simon Blanchoud> on Nov 12 2020, 11:29.

Nov 11 2020

Seemingly well aligned slides using projection mapping
c7fa459777c5
·Simon Blanchoud <Simon Blanchoud> on Nov 11 2020, 23:22.
Added functionalities to process TrackMate XML and ImageJ data, as well as…
273481ed69b2
·Simon Blanchoud <Simon Blanchoud> on Nov 11 2020, 13:37.

Aug 12 2020

Processing of Lionel data and new scripts
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·Simon Blanchoud <Simon Blanchoud> on Aug 12 2020, 09:57.

Jun 24 2020

Added a script to parse a characteristics table to classify species
c85ab7eec342
·Simon Blanchoud <Simon Blanchoud> on Jun 24 2020, 12:39.

Nov 7 2019

Filtered out unwanted files, fixed the snapshot by removing all controls and…
255d5596bca8
·Simon Blanchoud <Simon Blanchoud> on Nov 7 2019, 13:18.

Nov 5 2019

Transfer of files from leachi_flow for colony_census to work. Export to SVG is…
96e7368ff315
·Simon Blanchoud <Simon Blanchoud> on Nov 5 2019, 07:41.

Nov 4 2019

First commint to transfer everything to SiBoRG
fafe7ad676d7
·Simon Blanchoud <Simon Blanchoud> on Nov 4 2019, 17:05.

Historymaster3aa2120ee410dfc400135a7…

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History
master3aa2120ee410dfc400135a7…