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Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (3D_parallel) Graph

gyacomo/matlab
3D_parallel

History Graph

CommitAuthorDetailsCommitted
5e48668823b5Ahoffmann
first commit of z parallel version, still buggy 
Apr 5 2022
f225dc1f7a28Ahoffmann
scripts updates 
Mar 15 2022
65a774628574Ahoffmann
Drift Kinetic Dougherty added 
Feb 25 2022
3b26011b21feAhoffmann
save 
Feb 24 2022
85911ff7c9f2Ahoffmann
update 2022 
Jan 24 2022
c259b712c886Ahoffmann
scripts update 
Nov 23 2021
8031ad20e0b7Ahoffmann
NONLIN=0.5 run only NZ Z non linear interactions. Z modes are stored and can be… 
Nov 11 2021
0d685e3b68a2Ahoffmann
update scripts 
Nov 10 2021
8df05cb1f787Ahoffmann
script reogarnisation 
Nov 8 2021
f4ce4a1ac163Ahoffmann
update scripts 
Nov 8 2021
40660cf3cbf6Ahoffmann
scripts update 
Nov 2 2021
a26f57e84921Ahoffmann
Added adiabatic electrons and simplified Poisson eq 
Nov 1 2021
286b37a44f5eAhoffmann
Update scripts 
Oct 27 2021
59f9a2dc5254Ahoffmann
Update scripts 
Oct 22 2021
b8fae4bb2b6aAhoffmann
Scripts now read heat fluxes and name input file as fort_XX.90 
Oct 8 2021
d118c2b79c10Ahoffmann
scripts and typos 
Oct 4 2021
6fa34bf7805fAhoffmann
scripts update 
Oct 4 2021
01dcbfc35ab5Ahoffmann
scripts updates 
Sep 13 2021
8787f7eab857Ahoffmann
post processing scripts update 
Sep 9 2021
6ada1c908c4fAhoffmann
scripts update 
Aug 30 2021
8708f060e3b1Ahoffmann
to plot the evolution of parameters during a run 
Aug 30 2021
207d8e18ddbeAhoffmann
FCGK is available now 
Aug 4 2021
ab81f3e047faAhoffmann
scripts update 
Aug 4 2021
10eb8738cfd3Ahoffmann
typo 
Aug 3 2021
27afc84e7653Ahoffmann
added shear and inverse aspect ratio as input parameters 
Aug 3 2021
fba92bd9b4a0Ahoffmann
change simdir name 
Aug 3 2021
7be2bab52db0Ahoffmann
Reorganization of the matlab scripts for more readability 
Aug 2 2021
cdab05a12658Ahoffmann
Cleaning 
Aug 2 2021
7fbf0cbf3e4dAhoffmann
scripts 
Jul 28 2021
9b7ab14145b8Ahoffmann
SGGK mat filename corrected 
Jul 27 2021
5452b3b941c0Ahoffmann
upload scripts 
Jul 13 2021
089bc1ca8e5bAhoffmann
matlab scripts update 
Jul 6 2021
bb7b5ed9b9f1Ahoffmann
scripts updates 
Jun 15 2021
b0ff0dd6eb0eAhoffmann
scripts update 
Jun 7 2021
efef5834de83Ahoffmann
Matlab scripts update 
Jun 1 2021
cc10bca209dcAhoffmann
The normalization is now based on ion ion collision. 
May 20 2021
59fa66532c42Ahoffmann
Added ZF initialization option 
May 17 2021
4a6a43b6c612Ahoffmann
renamed inital background and noise variables 
May 17 2021
e1aafe9a98d8Ahoffmann
update matlab setup and postprocessing scripts 
May 17 2021
6e9d3d51b66cAhoffmann
scripts update 
Apr 20 2021
0d926a200cfcAhoffmann
Update intrinsic comput. time profiler 
Apr 13 2021
7b770777f0a7Ahoffmann
scripts update 
Apr 12 2021
e12f52de11ebAhoffmann
New scripts to run on Izar cluster 
Apr 12 2021
b51bfde66224Ahoffmann
Scripts update 
Apr 6 2021
a5eb6ee58d19Ahoffmann
New parameter to control the non linear sum truncations 
Apr 1 2021
58aaf1ad253eAhoffmann
update for COSOlver matrices in DK and GK approach + nmax of nonlin sum 
Mar 31 2021
c8ddcc8b70e7Ahoffmann
change of value for flag CO 
Mar 31 2021
0b542b7d557bAhoffmann
adapted for 0D output 
Mar 31 2021
938602b2105eAhoffmann
small correction 
Mar 31 2021
5b04f7e612edAhoffmann
Scripts to generate collision matrix using COSOlver given a grid 
Mar 31 2021
a143890d3612Ahoffmann
Add the PREFIX and SUFFIX options to add some naming 
Mar 18 2021
fb5e50f8993cAhoffmann
Adding processing directly in the code in order to reduce output 
Mar 18 2021
afc1673539d1Ahoffmann
removed Sapj output analysis 
Mar 16 2021
176447b078b3Ahoffmann
update scripts 
Mar 16 2021
edcfcb45adc6Ahoffmann
typo 
Mar 15 2021
107bbcf3c015Ahoffmann
gray is nicer 
Mar 15 2021
fd805cf83a36Ahoffmann
Change the output organization, grid is now written once 
Mar 15 2021
dd62fee629cfAhoffmann
Added an option to start with only noise in phi for smoother starts 
Mar 15 2021
18dbca68d0c9Ahoffmann
Timer for communications 
Mar 15 2021
d01976674558Ahoffmann
added closure in parameters to load 
Mar 15 2021
031ca67ff941Ahoffmann
post processing fixing 
Mar 3 2021
0e7f77639707Ahoffmann
New scripts for Marconi and Piz Daint HPC 
Mar 1 2021
03a6473f44eaAhoffmann
scripts update 
Feb 22 2021
5e7f506d8d49Ahoffmann
removed unused p_damped j_damped 
Feb 19 2021
2a5f329a8148Ahoffmann
scripts update 
Feb 19 2021
8b0e1eed463eAhoffmann
typo 
Feb 12 2021
20f0096c6b30Ahoffmann
correction on Napj diagnostic 
Feb 12 2021
9c460ecf6b6eAhoffmann
update scripts 
Jan 15 2021
969a1081e04cAhoffmann
Cleaning and ordering wk and matlab directories 
Jan 13 2021
d1b82f9414b6Ahoffmann
update matlab scripts 
Jan 12 2021
a2d76ab7d25aAhoffmann
Scripts updates 
Jan 11 2021
17244ee7e9a9Ahoffmann
clean up 
Jan 4 2021
492966862e31Ahoffmann
move matlab auxiliary script 
Dec 18 2020
78e603d998d7Ahoffmann
Update on diagnostics : if nsave_nd = 0, no initial diagnostic anymore 
Dec 15 2020
4a65992df0a0Ahoffmann
to retrieve phase space distribution function 
Dec 15 2020
8236765d977cAhoffmann
Add a intern wallclock runtime end condition to avoid enforced slurm end 
Dec 15 2020
84c2069410caAhoffmann
Added checkpoint saving rate as input parameter 
Dec 14 2020
2ae84092f813Ahoffmann
Change file management, the code is run directly from the results folder 
Dec 10 2020
83d1bb824ddaAhoffmann
for Marconi protability 
Dec 7 2020
b37744a10054Ahoffmann
compiles and seems to work fine. Tests ahead 
Nov 24 2020
003c315a1937Ahoffmann
First MPI version (not working) 
Nov 18 2020
1315f97a27f2Ahoffmann
minor changes 
Nov 2 2020
f916da899a9bAhoffmann
Statistical analysis and 3D plots in phase space 
Oct 30 2020
152777100d90Ahoffmann
Changed results folder organisation 
Oct 30 2020
95737685d609Ahoffmann
rmv 
Oct 27 2020
b1b0b4c27f38Ahoffmann
minor changes 
Oct 27 2020
ad4e64eaf6f0Ahoffmann
Scripts to study behavior of computational cost w.r.t. parameters 
Oct 27 2020
56b9dafb082cAhoffmann
Included a setup with sinusoidal background ES pot and density for KH 
Oct 22 2020
5b5157b79b2fAhoffmann
HeLaZ can now run in 1D over kz for growth rate study as MOLI 
Oct 5 2020
06b78cf31a87Ahoffmann
put kz > 0 instead of kr > 0 
Oct 5 2020
815be2d82380Ahoffmann
slight changes 
Oct 5 2020
30bba2373d79Ahoffmann
added kpar terms and option 
Oct 5 2020
c039548751beAhoffmann
Added non linear term and convolution through DFT with FFTW3 
Sep 30 2020
e04f06e1e9b9Ahoffmann
Backup before putting non linear solver 
Sep 30 2020
9ff600a1cabdAhoffmann
comparison between MOLI and HeLaZ on a 2D k grid 
Jul 10 2020
a67434b804e9Ahoffmann
added kr parameter for MOLI 
Jul 10 2020
8736458d5239Ahoffmann
routine for gif creation 
Jul 10 2020
3a65bf26b154Ahoffmann
routines for the non linear term 
Jul 10 2020
8f1d3b4102c8Ahoffmann
set linfitsolver off 
Jul 8 2020
2004d5b74ceeAhoffmann
Added title generation 
Jul 7 2020
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