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Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (master) Graph

gyacomo/src
master

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CommitAuthorDetailsCommitted
af58db38d117Ahoffmann
sign error 
Jul 28 2021
e63d0a3a0e1bAhoffmann
cleaning 
Jul 28 2021
fc2619075952Ahoffmann
correcting errors on kernel truncation 
Jul 28 2021
151b5716f725Ahoffmann
more precise usage of modules to avoid any variable redundancy 
Jul 28 2021
4d25323d1158Ahoffmann
added unacurate lenhard-bernstein CO 
Jul 27 2021
d7155ab14ebeAhoffmann
small changes 
Jul 27 2021
bc6308fc6f1eAhoffmann
update comment 
Jul 27 2021
d4d212dc9839Ahoffmann
small optim 
Jul 27 2021
72db62d1c287Ahoffmann
small corrections 
Jul 27 2021
787a55132d3bAhoffmann
removed redundant variables 
Jul 27 2021
7159133f0538Ahoffmann
editing error 
Jul 27 2021
4a4f017cb9baAhoffmann
Undo last change 
Jul 27 2021
8adf87064bbfAhoffmann
init of Tcoll corrected 
Jul 27 2021
248694612718Ahoffmann
clean up 
Jul 27 2021
601d05ec86ceAhoffmann
terminal output correction 
Jul 26 2021
fe7408305605Ahoffmann
introducing safety factor q0 
Jul 26 2021
323d44d3e9e2Ahoffmann
removing etaB (etaB is always 1) 
Jul 26 2021
11ba0d6d3930Ahoffmann
precomputation of linear coeff and curvature for optimization 
Jul 26 2021
163ef8795dd5Ahoffmann
possible module to put geometry processing and derivatives 
Jul 16 2021
dcf0d055db2aAhoffmann
added basic parallel terms 
Jul 16 2021
219ce17bb0f5Ahoffmann
z grid output and distribution 
Jul 14 2021
0e9a35697282Ahoffmann
typo 
Jul 13 2021
7871f83e1967Ahoffmann
parallel dimension z added (waiting for benchmark against 2D) 
Jul 12 2021
7a98af60b90aAhoffmann
full renaming of directions : r->x, z->y 
Jul 12 2021
2c540bd4efc9Ahoffmann
minor changes 
Jul 6 2021
c8f3250a693eAhoffmann
restarting with different PJ is now possible 
Jul 6 2021
b4daac7cdca1Ahoffmann
one can init the sim with a sin profile + invert the sign of linear eq. 
Jul 6 2021
186aab80ba93Ahoffmann
GK pitch angle is now on CO=3 
Jul 6 2021
37b681082b96Ahoffmann
reduce the terminal output at the end 
Jun 24 2021
6ebbf1115af0Ahoffmann
Added hd coeff in the params writing 
Jun 23 2021
b2d0cb4aa036Ahoffmann
rm unused code 
Jun 23 2021
18fb426ed7edAhoffmann
correction of non adiabatic moments in temp and dens diagnostics 
Jun 15 2021
ebbc7e298224Ahoffmann
displacement of manual bcast to utility module 
Jun 15 2021
2325410409f0Ahoffmann
temperature and density arrays for diagnostics 
Jun 15 2021
6613afcd40eaAhoffmann
check if the parallel. along p is suitable for DGGK 
Jun 15 2021
a6abe960c227Ahoffmann
manual bcast is a routine now 
Jun 15 2021
299d61ad527bAhoffmann
routine for manual bcast 
Jun 15 2021
9ef07a7a803bAhoffmann
Added density and temperature diagnostics 
Jun 15 2021
3fe3d63c9906Ahoffmann
correction of DGGK and tentative to unify DGGK_e and DGGK_i routines 
Jun 9 2021
96dc3536888dAhoffmann
update 2.7: collision improvement and corrections 
Jun 7 2021
aa80c0e9d028Ahoffmann
Risk of wrong adress when DK CO is used 
May 27 2021
aaceb561ed4fAhoffmann
reduce the amount of terminal output 
May 27 2021
d9e757c043c1Ahoffmann
Use of one merged cosolver file instead of multiple kperp files 
May 27 2021
bbe52dceba00Ahoffmann
typo 
May 27 2021
fc19b36cd2a8Ahoffmann
trying to solve daint compilation.. 
May 27 2021
a6d8467e3313Ahoffmann
remove unused routines 
May 27 2021
4ad67ff778faAhoffmann
Correction of the e-e collision frequency in dougherty 
May 26 2021
cc10bca209dcAhoffmann
The normalization is now based on ion ion collision. 
May 20 2021
8caeb5f11bd9Ahoffmann
Correction of the cosolver collisionality normalization 
May 19 2021
657e60ec8a69Ahoffmann
Added option to intialize a sin profile as initial state 
May 18 2021
3d636b95fda5Ahoffmann
typo 
May 17 2021
59fa66532c42Ahoffmann
Added ZF initialization option 
May 17 2021
4a6a43b6c612Ahoffmann
renamed inital background and noise variables 
May 17 2021
1a41c14b0cd5Ahoffmann
Source flag to remove ei ie collision terms 
May 17 2021
20f2ab777d1eAhoffmann
Typo 
May 4 2021
46c819e0cb3dAhoffmann
simplification of the code 
Apr 23 2021
607caa60fa17Ahoffmann
COSOlver matrices are asked up to 2/3 kperpmax (since AA on larger k) 
Apr 23 2021
e7b01d2ad565Ahoffmann
diagnostic to have a cp at tf if no crash 
Apr 23 2021
0d368ce61695Ahoffmann
typo correction 
Apr 20 2021
3a8d34ffde9dAhoffmann
variable flag COMPUTE_ONLY_EVEN_P renamed 
Apr 20 2021
6474c3489b77Ahoffmann
typo 
Apr 20 2021
ccc455f2aed9Ahoffmann
changed the writing in advancing the moments 
Apr 20 2021
22e728b541f5Ahoffmann
terminal info to know restart time 
Apr 20 2021
72eb238244b3Ahoffmann
removing other closure methods, only truncation is available 
Apr 20 2021
7398d80ef1f5Ahoffmann
implicit, lighter writing of loops 
Apr 20 2021
d047f3366b4bAhoffmann
typo in Pi,Ji parameters writing 
Apr 19 2021
dcf46dd9e179Ahoffmann
removed debug outputs 
Apr 15 2021
c9f1103728f4Ahoffmann
Avoid calling MPI comm routines if only one proc in p 
Apr 15 2021
2837b818d3ffAhoffmann
Added a flag to know if the process has kr=0 data or not 
Apr 14 2021
65812b944391Ahoffmann
removed world_rank and world_size variables 
Apr 13 2021
8014eafcf31dAhoffmann
typo 
Apr 13 2021
0d926a200cfcAhoffmann
Update intrinsic comput. time profiler 
Apr 13 2021
956e78c3dab9Ahoffmann
cleaning 
Apr 13 2021
e5be3acc0e29Ahoffmann
comments and correction of Sapj computed before dnjs 
Apr 13 2021
402b540ead7eAhoffmann
Changed the order in do to have all fields updated at end of step 
Apr 13 2021
ec6703038b27Ahoffmann
SUgama operator implementation 
Apr 13 2021
c7fa939998c0Ahoffmann
naming change of comm_r to comm_kr 
Apr 12 2021
9573a9db3bdeAhoffmann
naming change of comm_r to comm_kr 
Apr 12 2021
3703264f4929Ahoffmann
renaming of variables 
Apr 1 2021
54c0213dedbcAhoffmann
GK Cosolver update and collision routines 
Apr 1 2021
a5eb6ee58d19Ahoffmann
New parameter to control the non linear sum truncations 
Apr 1 2021
fb5e50f8993cAhoffmann
Adding processing directly in the code in order to reduce output 
Mar 18 2021
103674a8b230Ahoffmann
no 5D output at t=0 
Mar 16 2021
3bc306413732Ahoffmann
organized better time measurement 
Mar 16 2021
d37a83fd8569Ahoffmann
removed Sapj output 
Mar 16 2021
6015df684365Ahoffmann
add num proc p and kr in hdf5 
Mar 16 2021
fd805cf83a36Ahoffmann
Change the output organization, grid is now written once 
Mar 15 2021
71102757537bAhoffmann
Put all the advance fields in a routine for clarity in the time loop 
Mar 15 2021
2fdcd01a63ebAhoffmann
restart functions to load a state from an older sim 
Mar 15 2021
6e62367cb401Ahoffmann
typo in the sign 
Mar 15 2021
56e0b1bf214fAhoffmann
Allocation of Na00 arrays for diagnostics in 2D parallel 
Mar 15 2021
5ebc1b03d646Ahoffmann
Replaced only Na00 start option with phi start option 
Mar 15 2021
39cf2ca15e7eAhoffmann
Initialization on phi only is now possible, restart functions are moved 
Mar 15 2021
b6c9fd757683Ahoffmann
2D parallel distribution 
Mar 15 2021
f85f7606acc0Ahoffmann
Update ghosts cells exchange for parallel 2D 
Mar 15 2021
639ccdd11e81Ahoffmann
Change of communication mean for 2D parallel 
Mar 15 2021
4d49927500deAhoffmann
Adapted for 2D data distribution on p and kr 
Mar 15 2021
62d467fd7b40Ahoffmann
comment 
Mar 15 2021
629a0a276e4aAhoffmann
Option to skip p=odd computation since odds are 0. + typo 
Mar 15 2021
5ed2781da4feAhoffmann
Corrections of Dougherty operator 
Mar 15 2021
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