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Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (shear_version) Graph

gyacomo/src
shear_version

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CommitAuthorDetailsCommitted
44995a79168cAhoffmann
Origin contains now HeLaZ 3D version (2D is saved in a branch) 
Aug 2 2021
062c21db7967Ahoffmann
kernel truncation has been corrected 
Jul 28 2021
adb9a6f439b4Ahoffmann
module for 3D 
Jul 28 2021
eb0604e621b0Ahoffmann
clean up 
Jul 27 2021
72cb6f4e424eAhoffmann
undo last change 
Jul 27 2021
ba05f7e1415dAhoffmann
Correction of Tcoll init 
Jul 27 2021
2c540bd4efc9Ahoffmann
minor changes 
Jul 6 2021
c8f3250a693eAhoffmann
restarting with different PJ is now possible 
Jul 6 2021
b4daac7cdca1Ahoffmann
one can init the sim with a sin profile + invert the sign of linear eq. 
Jul 6 2021
186aab80ba93Ahoffmann
GK pitch angle is now on CO=3 
Jul 6 2021
37b681082b96Ahoffmann
reduce the terminal output at the end 
Jun 24 2021
6ebbf1115af0Ahoffmann
Added hd coeff in the params writing 
Jun 23 2021
b2d0cb4aa036Ahoffmann
rm unused code 
Jun 23 2021
18fb426ed7edAhoffmann
correction of non adiabatic moments in temp and dens diagnostics 
Jun 15 2021
ebbc7e298224Ahoffmann
displacement of manual bcast to utility module 
Jun 15 2021
2325410409f0Ahoffmann
temperature and density arrays for diagnostics 
Jun 15 2021
6613afcd40eaAhoffmann
check if the parallel. along p is suitable for DGGK 
Jun 15 2021
a6abe960c227Ahoffmann
manual bcast is a routine now 
Jun 15 2021
299d61ad527bAhoffmann
routine for manual bcast 
Jun 15 2021
9ef07a7a803bAhoffmann
Added density and temperature diagnostics 
Jun 15 2021
3fe3d63c9906Ahoffmann
correction of DGGK and tentative to unify DGGK_e and DGGK_i routines 
Jun 9 2021
96dc3536888dAhoffmann
update 2.7: collision improvement and corrections 
Jun 7 2021
aa80c0e9d028Ahoffmann
Risk of wrong adress when DK CO is used 
May 27 2021
aaceb561ed4fAhoffmann
reduce the amount of terminal output 
May 27 2021
d9e757c043c1Ahoffmann
Use of one merged cosolver file instead of multiple kperp files 
May 27 2021
bbe52dceba00Ahoffmann
typo 
May 27 2021
fc19b36cd2a8Ahoffmann
trying to solve daint compilation.. 
May 27 2021
a6d8467e3313Ahoffmann
remove unused routines 
May 27 2021
4ad67ff778faAhoffmann
Correction of the e-e collision frequency in dougherty 
May 26 2021
cc10bca209dcAhoffmann
The normalization is now based on ion ion collision. 
May 20 2021
8caeb5f11bd9Ahoffmann
Correction of the cosolver collisionality normalization 
May 19 2021
657e60ec8a69Ahoffmann
Added option to intialize a sin profile as initial state 
May 18 2021
3d636b95fda5Ahoffmann
typo 
May 17 2021
59fa66532c42Ahoffmann
Added ZF initialization option 
May 17 2021
4a6a43b6c612Ahoffmann
renamed inital background and noise variables 
May 17 2021
1a41c14b0cd5Ahoffmann
Source flag to remove ei ie collision terms 
May 17 2021
20f2ab777d1eAhoffmann
Typo 
May 4 2021
46c819e0cb3dAhoffmann
simplification of the code 
Apr 23 2021
607caa60fa17Ahoffmann
COSOlver matrices are asked up to 2/3 kperpmax (since AA on larger k) 
Apr 23 2021
e7b01d2ad565Ahoffmann
diagnostic to have a cp at tf if no crash 
Apr 23 2021
0d368ce61695Ahoffmann
typo correction 
Apr 20 2021
3a8d34ffde9dAhoffmann
variable flag COMPUTE_ONLY_EVEN_P renamed 
Apr 20 2021
6474c3489b77Ahoffmann
typo 
Apr 20 2021
ccc455f2aed9Ahoffmann
changed the writing in advancing the moments 
Apr 20 2021
22e728b541f5Ahoffmann
terminal info to know restart time 
Apr 20 2021
72eb238244b3Ahoffmann
removing other closure methods, only truncation is available 
Apr 20 2021
7398d80ef1f5Ahoffmann
implicit, lighter writing of loops 
Apr 20 2021
d047f3366b4bAhoffmann
typo in Pi,Ji parameters writing 
Apr 19 2021
dcf46dd9e179Ahoffmann
removed debug outputs 
Apr 15 2021
c9f1103728f4Ahoffmann
Avoid calling MPI comm routines if only one proc in p 
Apr 15 2021
2837b818d3ffAhoffmann
Added a flag to know if the process has kr=0 data or not 
Apr 14 2021
65812b944391Ahoffmann
removed world_rank and world_size variables 
Apr 13 2021
8014eafcf31dAhoffmann
typo 
Apr 13 2021
0d926a200cfcAhoffmann
Update intrinsic comput. time profiler 
Apr 13 2021
956e78c3dab9Ahoffmann
cleaning 
Apr 13 2021
e5be3acc0e29Ahoffmann
comments and correction of Sapj computed before dnjs 
Apr 13 2021
402b540ead7eAhoffmann
Changed the order in do to have all fields updated at end of step 
Apr 13 2021
ec6703038b27Ahoffmann
SUgama operator implementation 
Apr 13 2021
c7fa939998c0Ahoffmann
naming change of comm_r to comm_kr 
Apr 12 2021
9573a9db3bdeAhoffmann
naming change of comm_r to comm_kr 
Apr 12 2021
3703264f4929Ahoffmann
renaming of variables 
Apr 1 2021
54c0213dedbcAhoffmann
GK Cosolver update and collision routines 
Apr 1 2021
a5eb6ee58d19Ahoffmann
New parameter to control the non linear sum truncations 
Apr 1 2021
fb5e50f8993cAhoffmann
Adding processing directly in the code in order to reduce output 
Mar 18 2021
103674a8b230Ahoffmann
no 5D output at t=0 
Mar 16 2021
3bc306413732Ahoffmann
organized better time measurement 
Mar 16 2021
d37a83fd8569Ahoffmann
removed Sapj output 
Mar 16 2021
6015df684365Ahoffmann
add num proc p and kr in hdf5 
Mar 16 2021
fd805cf83a36Ahoffmann
Change the output organization, grid is now written once 
Mar 15 2021
71102757537bAhoffmann
Put all the advance fields in a routine for clarity in the time loop 
Mar 15 2021
2fdcd01a63ebAhoffmann
restart functions to load a state from an older sim 
Mar 15 2021
6e62367cb401Ahoffmann
typo in the sign 
Mar 15 2021
56e0b1bf214fAhoffmann
Allocation of Na00 arrays for diagnostics in 2D parallel 
Mar 15 2021
5ebc1b03d646Ahoffmann
Replaced only Na00 start option with phi start option 
Mar 15 2021
39cf2ca15e7eAhoffmann
Initialization on phi only is now possible, restart functions are moved 
Mar 15 2021
b6c9fd757683Ahoffmann
2D parallel distribution 
Mar 15 2021
f85f7606acc0Ahoffmann
Update ghosts cells exchange for parallel 2D 
Mar 15 2021
639ccdd11e81Ahoffmann
Change of communication mean for 2D parallel 
Mar 15 2021
4d49927500deAhoffmann
Adapted for 2D data distribution on p and kr 
Mar 15 2021
62d467fd7b40Ahoffmann
comment 
Mar 15 2021
629a0a276e4aAhoffmann
Option to skip p=odd computation since odds are 0. + typo 
Mar 15 2021
5ed2781da4feAhoffmann
Corrections of Dougherty operator 
Mar 15 2021
690e56402ef4Ahoffmann
Broadcast from rank_p 0 to all other p processes for phi computation 
Mar 15 2021
2799bb019144Ahoffmann
Adaptation for 2D parallel runs with mpi along p and kr 
Mar 15 2021
bd7c9676eebcAhoffmann
added output of the parallel setup in terminal 
Mar 15 2021
ccd109dfc729Ahoffmann
New field to write 00 moments in parallel through gathering 
Mar 15 2021
dc0bae856e8bAhoffmann
Imaginary unit was not written in double precision 
Mar 15 2021
503fa0fa9f96Ahoffmann
start of parallel along p 
Mar 3 2021
4aa43bbb59a6Ahoffmann
bug fixed in restarting sim 
Feb 23 2021
018142a60b27Ahoffmann
Kinetic hyperdiffusion is added 
Feb 22 2021
991ed5bb1c22Ahoffmann
comments 
Feb 22 2021
ccdc151349baAhoffmann
removed unused p_damped j_damped 
Feb 19 2021
5e7f506d8d49Ahoffmann
removed unused p_damped j_damped 
Feb 19 2021
d9db1695730eAhoffmann
started kinetic hyperdiffusivity 
Feb 19 2021
298107696b56Ahoffmann
Bug solved on ghost PJ values 
Feb 19 2021
637b4a794827Ahoffmann
minor changes 
Feb 19 2021
ee6a8760a3efAhoffmann
added parameters for kinetic hyperdiffusion 
Feb 19 2021
784baff12d6dAhoffmann
Checkpoint loading are done on output file now, bug in write 5D corrected 
Feb 19 2021
8e16d3b4f32cAhoffmann
minor changes 
Feb 19 2021
3deffddb4b8aAhoffmann
added copy closure and started semi collisional closure 
Feb 19 2021
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