Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (3D) History

History
3Ddd16468815abd3853fa4f48…

Dec 15 2020

scripts minor updates
dd16468815ab
·Ahoffmann on Dec 15 2020, 14:25.
Add a intern wallclock runtime end condition to avoid enforced slurm end
8236765d977c
·Ahoffmann on Dec 15 2020, 14:25.

Dec 14 2020

automatic reading of execution time per Nproc
8dd2f3189f27
·Ahoffmann on Dec 14 2020, 11:29.
display run time in second as well at the end
94c8c998dd6c
·Ahoffmann on Dec 14 2020, 11:28.
write the number of process in output file
e7303f1d020e
·Ahoffmann on Dec 14 2020, 09:33.
update results
a8e24f8ee529
·Ahoffmann on Dec 14 2020, 09:03.
Added checkpoint saving rate as input parameter
84c2069410ca
·Ahoffmann on Dec 14 2020, 09:03.

Dec 10 2020

Change file management, the code is run directly from the results folder
2ae84092f813
·Ahoffmann on Dec 10 2020, 17:13.
Resolved a bug on checkpoint saves and reload
d557efa46891
·Ahoffmann on Dec 10 2020, 17:12.

Dec 9 2020

resolving shock when restart
6312425216de
·Ahoffmann on Dec 9 2020, 12:05.

Dec 8 2020

scripts updates
a198a66dc93b
·Ahoffmann on Dec 8 2020, 17:08.
adapted for opt Sapj
a8c67f701e16
·Ahoffmann on Dec 8 2020, 17:08.
avoid spamming ad the end of sim if exit normal
01174c61bab9
·Ahoffmann on Dec 8 2020, 17:07.
Optimized version of nonlinear term computation
6640dd9ffb14
·Ahoffmann on Dec 8 2020, 17:07.
added lign to uncomment for marconi
44b3a3e086e5
·Ahoffmann on Dec 8 2020, 17:07.
minor changes
e6163d711d35
·Ahoffmann on Dec 8 2020, 09:39.

Dec 7 2020

change fftw lib directory
f5fae1173c2a
·Ahoffmann on Dec 7 2020, 18:24.
change fftw lib directory
c308cc2fa91b
·Ahoffmann on Dec 7 2020, 18:20.
rm fort.90
727ea3f7654d
·Ahoffmann on Dec 7 2020, 18:02.
rm .sh
39f029945fb6
·Ahoffmann on Dec 7 2020, 18:01.
MC
b76b7e3fc6b9
·Ahoffmann on Dec 7 2020, 17:47.
MC
59cd7bfb1e50
·Ahoffmann on Dec 7 2020, 17:46.
MC
1bacc0d864c1
·Ahoffmann on Dec 7 2020, 17:44.
MC
41856e03467f
·Ahoffmann on Dec 7 2020, 17:37.
Merge branch 'MPI' of ssh://c4science.ch/source/HeLaZ into MPI
b875de2bba5e
·Ahoffmann on Dec 7 2020, 17:27.
minor changes
93c81128ac73
·Ahoffmann on Dec 7 2020, 17:27.
minor changes
12e7a447e5e5
·Ahoffmann on Dec 7 2020, 17:26.
ignore srcinfo.h
841d98c1406b
·Ahoffmann on Dec 7 2020, 17:25.
put srcinfo folder
b8b2ce8faa89
·Ahoffmann on Dec 7 2020, 16:20.
ignore bash script since generated by matlab
94d46b40492c
·Ahoffmann on Dec 7 2020, 16:12.
Remove local directory from git
a5148e159df6
·Ahoffmann on Dec 7 2020, 16:11.
Interface for Marconi's cluster
abfcbe62cf8d
·Ahoffmann on Dec 7 2020, 16:08.
minor changes
7a631a931c3d
·Ahoffmann on Dec 7 2020, 16:08.
update gitignore
20656848698d
·Ahoffmann on Dec 7 2020, 16:06.
correction needed for linear simulations
d9b34ecf7d29
·Ahoffmann on Dec 7 2020, 16:05.
Remove unnecessary mpi barrier
86f4c0a79747
·Ahoffmann on Dec 7 2020, 16:05.
for Marconi protability
83d1bb824dda
·Ahoffmann on Dec 7 2020, 16:03.

Nov 27 2020

Marconi makefile version
15a591afc00b
·• Antoinehoff on Nov 27 2020, 17:26.
portability
4e70c2e2e2c8
·Ahoffmann on Nov 27 2020, 17:24.
portability update
ced9844792bf
·Ahoffmann on Nov 27 2020, 17:18.
managing portability
8dcebe03b67e
·Ahoffmann on Nov 27 2020, 15:30.
minor changes
fde3f884b0a2
·Ahoffmann on Nov 27 2020, 14:06.

Nov 25 2020

solved checkpoint restart for parallel. Commented unused sections
2c9ad2089b45
·Ahoffmann on Nov 25 2020, 11:08.
put optimized compilation
8d91014b31a3
·Ahoffmann on Nov 25 2020, 11:07.
Script to run small tests for parallel implementation
9f79de85cc32
·Ahoffmann on Nov 25 2020, 08:25.
minor changes
1f062a19a565
·Ahoffmann on Nov 25 2020, 08:24.

Nov 24 2020

Update roadmap
9ff48d1d1f46
·Ahoffmann on Nov 24 2020, 15:07.
compiles and seems to work fine. Tests ahead
b37744a10054
·Ahoffmann on Nov 24 2020, 15:00.

Nov 23 2020

does not work
00337f61ecda
·Ahoffmann on Nov 23 2020, 16:28.

Nov 18 2020

First MPI version (not working)
003c315a1937
·Ahoffmann on Nov 18 2020, 08:41.

Nov 2 2020

update gitignore
8775464b4dc2
·Ahoffmann on Nov 2 2020, 15:56.
update gitignore
05c98732c208
·Ahoffmann on Nov 2 2020, 15:55.
No more r,z grid bluiding since not used
b33a417fe2ce
·Ahoffmann on Nov 2 2020, 15:55.
update roadmap
f6ac57c618a7
·Ahoffmann on Nov 2 2020, 14:34.
Analysis of particle flux, compilation of multiple simulation results
082542559175
·Ahoffmann on Nov 2 2020, 14:33.
minor changes
1315f97a27f2
·Ahoffmann on Nov 2 2020, 14:33.

Oct 30 2020

srcinfo back
a9140441d674
·Ahoffmann on Oct 30 2020, 16:06.
Notes about value found on stationary particle flux
0d63936a1cc4
·Ahoffmann on Oct 30 2020, 15:49.
Load each job to compile all results
244f33d40a56
·Ahoffmann on Oct 30 2020, 15:48.
Utility changes
3e3e44816111
·Ahoffmann on Oct 30 2020, 15:48.
Script to run linear analysis
19040def75a8
·Ahoffmann on Oct 30 2020, 15:48.
Statistical analysis and 3D plots in phase space
f916da899a9b
·Ahoffmann on Oct 30 2020, 15:47.
Changed results folder organisation
152777100d90
·Ahoffmann on Oct 30 2020, 15:47.

Oct 28 2020

Script for linear growth rate study
adb08d06cf9f
·Ahoffmann on Oct 28 2020, 10:39.
Condition for Nkr=1 was wrong
44bd301d6b65
·Ahoffmann on Oct 28 2020, 10:38.
correct typo for cpu time display
e897c0b9e7e9
·Ahoffmann on Oct 28 2020, 10:21.
muted Inf detection terminal output
a9038b96cfaa
·Ahoffmann on Oct 28 2020, 09:14.
Update Readme
4867e4368ebe
·Ahoffmann on Oct 28 2020, 09:06.

Oct 27 2020

Small loop optimizations
fafbd27875f3
·Ahoffmann on Oct 27 2020, 16:19.
write CPU time at the end of simu
bba838ddad3f
·Ahoffmann on Oct 27 2020, 16:19.
rmv
95737685d609
·Ahoffmann on Oct 27 2020, 16:18.
added basic instructions
349fc5c37a10
·Ahoffmann on Oct 27 2020, 12:03.
remove gif in readme
e83727000fd4
·Ahoffmann on Oct 27 2020, 11:58.
gif in readme
82706032da8b
·Ahoffmann on Oct 27 2020, 11:54.
gif in readme?
349740d64205
·Ahoffmann on Oct 27 2020, 11:52.
Merge branch 'master' of ssh://c4science.ch/source/HeLaZ
2a320f39a3b2
·Ahoffmann on Oct 27 2020, 11:51.
tying to put a gif in the readme
05211e673d31
·Ahoffmann on Oct 27 2020, 11:51.
tying to put a gif in the readme
c771f993830d
·Ahoffmann on Oct 27 2020, 11:47.
minor changes
9a0050373a7a
·Ahoffmann on Oct 27 2020, 11:42.
Update README
980ddcab8fb8
·Ahoffmann on Oct 27 2020, 10:58.
Update roadmap
4df81855d76e
·Ahoffmann on Oct 27 2020, 10:53.
Project of adaptative time step scheme
3d6853a0ffd8
·Ahoffmann on Oct 27 2020, 10:49.
kr=0 symmetric initialization and enforcement at each time step
222b08e4a12e
·Ahoffmann on Oct 27 2020, 10:49.
minor changes
b1b0b4c27f38
·Ahoffmann on Oct 27 2020, 10:48.
Scripts to study behavior of computational cost w.r.t. parameters
ad4e64eaf6f0
·Ahoffmann on Oct 27 2020, 10:48.
Separation between loading results and post processing
4edaa07d6309
·Ahoffmann on Oct 27 2020, 10:47.
Separation of parameters input scripts and fort.90 writing in matlab
ccb7ee45a4c2
·Ahoffmann on Oct 27 2020, 10:47.

Oct 22 2020

Included a setup with sinusoidal background ES pot and density for KH
56b9dafb082c
·Ahoffmann on Oct 22 2020, 14:15.

Oct 5 2020

Added z shift to the Gaussian initialization
4817fe56aaaa
·Ahoffmann on Oct 5 2020, 15:21.
sc
efffb3dc0f40
·Ahoffmann on Oct 5 2020, 15:19.
sc
41ec3009e51d
·Ahoffmann on Oct 5 2020, 14:52.
diagnose each 5 time unit
c0fb80f30a15
·Ahoffmann on Oct 5 2020, 14:52.
increased Gaussian init size
19b55ed3ada6
·Ahoffmann on Oct 5 2020, 14:52.
Forgot Antialiasing...
ff4a338a98c5
·Ahoffmann on Oct 5 2020, 14:52.
HeLaZ can now run in 1D over kz for growth rate study as MOLI
5b5157b79b2f
·Ahoffmann on Oct 5 2020, 14:52.
put kz > 0 instead of kr > 0
06b78cf31a87
·Ahoffmann on Oct 5 2020, 10:20.
sc
01095795c37f
·Ahoffmann on Oct 5 2020, 10:02.
non-linear term written more explicitely
46d880bc2a65
·Ahoffmann on Oct 5 2020, 09:59.
slight changes
815be2d82380
·Ahoffmann on Oct 5 2020, 09:59.
added kpar terms and option
30bba2373d79
·Ahoffmann on Oct 5 2020, 09:59.

History3Ddd16468815abd3853fa4f48…

Dec 15 2020

Dec 14 2020

Dec 10 2020

Dec 9 2020

Dec 8 2020

Dec 7 2020

Nov 27 2020

Nov 25 2020

Nov 24 2020

Nov 23 2020

Nov 18 2020

Nov 2 2020

Oct 30 2020

Oct 28 2020

Oct 27 2020

Oct 22 2020

Oct 5 2020

History
3Ddd16468815abd3853fa4f48…