Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (3D) History

gyacomo/src
3D4aa43bbb59a62d89ce91ff6…

Feb 23 2021

bug fixed in restarting sim
4aa43bbb59a6
·Ahoffmann on Feb 23 2021, 09:01.

Feb 22 2021

Kinetic hyperdiffusion is added
018142a60b27
·Ahoffmann on Feb 22 2021, 11:11.
comments
991ed5bb1c22
·Ahoffmann on Feb 22 2021, 11:11.

Feb 19 2021

removed unused p_damped j_damped
ccdc151349ba
·Ahoffmann on Feb 19 2021, 15:17.
removed unused p_damped j_damped
5e7f506d8d49
·Ahoffmann on Feb 19 2021, 15:13.
started kinetic hyperdiffusivity
d9db1695730e
·Ahoffmann on Feb 19 2021, 11:26.
Bug solved on ghost PJ values
298107696b56
·Ahoffmann on Feb 19 2021, 11:25.
minor changes
637b4a794827
·Ahoffmann on Feb 19 2021, 11:24.
added parameters for kinetic hyperdiffusion
ee6a8760a3ef
·Ahoffmann on Feb 19 2021, 11:24.
Checkpoint loading are done on output file now, bug in write 5D corrected
784baff12d6d
·Ahoffmann on Feb 19 2021, 11:23.
minor changes
8e16d3b4f32c
·Ahoffmann on Feb 19 2021, 11:22.
added copy closure and started semi collisional closure
3deffddb4b8a
·Ahoffmann on Feb 19 2021, 11:22.

Feb 12 2021

typo
8b0e1eed463e
·Ahoffmann on Feb 12 2021, 16:00.
correction on Napj diagnostic
20f0096c6b30
·Ahoffmann on Feb 12 2021, 09:21.

Feb 1 2021

typo on crashed variable
c01895f0ca25
·Ahoffmann on Feb 1 2021, 12:51.
cp at end of sim only if not crashed simulation
de2eb44013a7
·Ahoffmann on Feb 1 2021, 12:12.
Added simulation end checkpoint
e06013d45143
·Ahoffmann on Feb 1 2021, 10:12.

Jan 15 2021

closure and kernel model flags
1ac9de43ef0f
·Ahoffmann on Jan 15 2021, 14:34.
moments boundaries are extended for closure
b82803a09f19
·Ahoffmann on Jan 15 2021, 14:34.
Kernel and closure are put away from rhs
4521ba30593d
·Ahoffmann on Jan 15 2021, 14:33.
One can continue simulation with different PJ now
ca643c9bac92
·Ahoffmann on Jan 15 2021, 14:33.
closure mod adaptation
5437ed07bcaa
·Ahoffmann on Jan 15 2021, 14:33.
module for different closure model
977cd88ed3b8
·Ahoffmann on Jan 15 2021, 14:32.

Jan 13 2021

Put DK Full Coulomb CO in collision mode as a routine
bf9d0b0f34e4
·Ahoffmann on Jan 13 2021, 11:23.

Jan 12 2021

comments
8fe6558f23e1
·Ahoffmann on Jan 12 2021, 15:48.
cleaning
5a9a047c007b
·Ahoffmann on Jan 12 2021, 15:48.
Split moment_eq_rhs in two routines (i,e)
5a4c7c3cef78
·Ahoffmann on Jan 12 2021, 15:48.
GK dougherty is added
bb9d57674ec6
·Ahoffmann on Jan 12 2021, 15:47.
moved precomputed factors from stepon routines to model
17aae9e64a04
·Ahoffmann on Jan 12 2021, 11:51.
Start writing collision operator in a separated module
9bea36bdb7f8
·Ahoffmann on Jan 12 2021, 11:50.

Jan 11 2021

more output for initialization
2293a9c3b745
·Ahoffmann on Jan 11 2021, 17:18.
Use precomputed Kernel and closed truncation at Jmax
93124e150641
·Ahoffmann on Jan 11 2021, 17:07.
Kernel precomputation
5048603059f1
·Ahoffmann on Jan 11 2021, 17:05.
minor changes
7d0311467057
·Ahoffmann on Jan 11 2021, 17:05.
Debugging 1D linear
5c727b907e8a
·Ahoffmann on Jan 11 2021, 10:33.
AA modification in Convolution_2D (unused)
c3598dd51b12
·Ahoffmann on Jan 11 2021, 10:33.
One big FC file is now sufficient to load FC mat
40f1c5fdc83e
·Ahoffmann on Jan 11 2021, 10:32.
Debugging 1D linear simulations
e0c629f83f22
·Ahoffmann on Jan 11 2021, 10:31.

Jan 8 2021

anticipated kernel evaluation
9db4099151a2
·Ahoffmann on Jan 8 2021, 17:46.
delete redundancy
fd6474e8eeeb
·Ahoffmann on Jan 8 2021, 17:44.
AA changed and collision organisation
6a35ad177752
·Ahoffmann on Jan 8 2021, 17:41.
unused
89bbd38a7116
·Ahoffmann on Jan 8 2021, 15:18.

Jan 5 2021

slight output change
d13bdf7310d1
·Ahoffmann on Jan 5 2021, 13:36.
Prevent bad ikzs ikze allocation for last process id
cca109703c19
·Ahoffmann on Jan 5 2021, 13:36.

Jan 4 2021

Use a MPI_ALLREDUCE for exit condition
9057de439c4a
·Ahoffmann on Jan 4 2021, 17:19.
comments
65c26e60a5ec
·Ahoffmann on Jan 4 2021, 17:19.
clean up
17244ee7e9a9
·Ahoffmann on Jan 4 2021, 13:56.

Dec 17 2020

update finish conditions
92ffdefc40b2
·Ahoffmann on Dec 17 2020, 15:45.
improve finish conditions for MPI
8330ee6bacdb
·Ahoffmann on Dec 17 2020, 15:07.

Dec 15 2020

saving data is disabled by negative nsave now
355bb4bf67dc
·Ahoffmann on Dec 15 2020, 18:00.
remove write_field flags
accf2cc1dcaa
·Ahoffmann on Dec 15 2020, 17:42.
Update on diagnostics : if nsave_nd = 0, no initial diagnostic anymore
78e603d998d7
·Ahoffmann on Dec 15 2020, 17:40.
Exit 10% earlier than the CPU time asked to ensure final diagnostics
a60ba8910732
·Ahoffmann on Dec 15 2020, 14:48.
removed unused variables KR0KH A0KH and CANCEL_ODD_P
41717707cd69
·Ahoffmann on Dec 15 2020, 14:26.
Add a intern wallclock runtime end condition to avoid enforced slurm end
8236765d977c
·Ahoffmann on Dec 15 2020, 14:25.

Dec 14 2020

display run time in second as well at the end
94c8c998dd6c
·Ahoffmann on Dec 14 2020, 11:28.
write the number of process in output file
e7303f1d020e
·Ahoffmann on Dec 14 2020, 09:33.
Added checkpoint saving rate as input parameter
84c2069410ca
·Ahoffmann on Dec 14 2020, 09:03.

Dec 10 2020

Resolved a bug on checkpoint saves and reload
d557efa46891
·Ahoffmann on Dec 10 2020, 17:12.

Dec 9 2020

resolving shock when restart
6312425216de
·Ahoffmann on Dec 9 2020, 12:05.

Dec 8 2020

adapted for opt Sapj
a8c67f701e16
·Ahoffmann on Dec 8 2020, 17:08.
avoid spamming ad the end of sim if exit normal
01174c61bab9
·Ahoffmann on Dec 8 2020, 17:07.
Optimized version of nonlinear term computation
6640dd9ffb14
·Ahoffmann on Dec 8 2020, 17:07.

Dec 7 2020

MC
59cd7bfb1e50
·Ahoffmann on Dec 7 2020, 17:46.
MC
1bacc0d864c1
·Ahoffmann on Dec 7 2020, 17:44.
MC
41856e03467f
·Ahoffmann on Dec 7 2020, 17:37.
minor changes
7a631a931c3d
·Ahoffmann on Dec 7 2020, 16:08.
correction needed for linear simulations
d9b34ecf7d29
·Ahoffmann on Dec 7 2020, 16:05.
Remove unnecessary mpi barrier
86f4c0a79747
·Ahoffmann on Dec 7 2020, 16:05.

Nov 27 2020

portability update
ced9844792bf
·Ahoffmann on Nov 27 2020, 17:18.
managing portability
8dcebe03b67e
·Ahoffmann on Nov 27 2020, 15:30.
minor changes
fde3f884b0a2
·Ahoffmann on Nov 27 2020, 14:06.

Nov 25 2020

solved checkpoint restart for parallel. Commented unused sections
2c9ad2089b45
·Ahoffmann on Nov 25 2020, 11:08.

Nov 24 2020

compiles and seems to work fine. Tests ahead
b37744a10054
·Ahoffmann on Nov 24 2020, 15:00.

Nov 23 2020

does not work
00337f61ecda
·Ahoffmann on Nov 23 2020, 16:28.

Nov 18 2020

First MPI version (not working)
003c315a1937
·Ahoffmann on Nov 18 2020, 08:41.

Nov 2 2020

No more r,z grid bluiding since not used
b33a417fe2ce
·Ahoffmann on Nov 2 2020, 15:55.

Oct 30 2020

srcinfo back
a9140441d674
·Ahoffmann on Oct 30 2020, 16:06.
Utility changes
3e3e44816111
·Ahoffmann on Oct 30 2020, 15:48.

Oct 28 2020

Condition for Nkr=1 was wrong
44bd301d6b65
·Ahoffmann on Oct 28 2020, 10:38.
correct typo for cpu time display
e897c0b9e7e9
·Ahoffmann on Oct 28 2020, 10:21.
muted Inf detection terminal output
a9038b96cfaa
·Ahoffmann on Oct 28 2020, 09:14.

Oct 27 2020

Small loop optimizations
fafbd27875f3
·Ahoffmann on Oct 27 2020, 16:19.
write CPU time at the end of simu
bba838ddad3f
·Ahoffmann on Oct 27 2020, 16:19.
Project of adaptative time step scheme
3d6853a0ffd8
·Ahoffmann on Oct 27 2020, 10:49.
kr=0 symmetric initialization and enforcement at each time step
222b08e4a12e
·Ahoffmann on Oct 27 2020, 10:49.

Oct 22 2020

Included a setup with sinusoidal background ES pot and density for KH
56b9dafb082c
·Ahoffmann on Oct 22 2020, 14:15.

Oct 5 2020

Added z shift to the Gaussian initialization
4817fe56aaaa
·Ahoffmann on Oct 5 2020, 15:21.
diagnose each 5 time unit
c0fb80f30a15
·Ahoffmann on Oct 5 2020, 14:52.
increased Gaussian init size
19b55ed3ada6
·Ahoffmann on Oct 5 2020, 14:52.
Forgot Antialiasing...
ff4a338a98c5
·Ahoffmann on Oct 5 2020, 14:52.
HeLaZ can now run in 1D over kz for growth rate study as MOLI
5b5157b79b2f
·Ahoffmann on Oct 5 2020, 14:52.
put kz > 0 instead of kr > 0
06b78cf31a87
·Ahoffmann on Oct 5 2020, 10:20.
non-linear term written more explicitely
46d880bc2a65
·Ahoffmann on Oct 5 2020, 09:59.
slight changes
815be2d82380
·Ahoffmann on Oct 5 2020, 09:59.
added kpar terms and option
30bba2373d79
·Ahoffmann on Oct 5 2020, 09:59.

Sep 30 2020

Added non linear term and convolution through DFT with FFTW3
c039548751be
·Ahoffmann on Sep 30 2020, 17:31.
Origin singularity cancelation with ikr_0 variables
af40c93ec415
·Ahoffmann on Sep 30 2020, 09:36.
Naming and structural change
adb59059244c
·Ahoffmann on Sep 30 2020, 09:28.
Backup before putting non linear solver
e04f06e1e9b9
·Ahoffmann on Sep 30 2020, 08:28.

gyacomo/src3D4aa43bbb59a62d89ce91ff6…

Feb 23 2021

Feb 22 2021

Feb 19 2021

Feb 12 2021

Feb 1 2021

Jan 15 2021

Jan 13 2021

Jan 12 2021

Jan 11 2021

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Dec 17 2020

Dec 15 2020

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Nov 27 2020

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Sep 30 2020

gyacomo/src
3D4aa43bbb59a62d89ce91ff6…