Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (3D) History

gyacomo/wk
3D71b098bf2e56713f1f59772…

Jul 14 2021

scripts updates
71b098bf2e56
·Ahoffmann on Jul 14 2021, 17:07.

Jul 13 2021

3D scripts
615863ce2a27
·Ahoffmann on Jul 13 2021, 19:18.

Jul 12 2021

parallel dimension z added (waiting for benchmark against 2D)
7871f83e1967
·Ahoffmann on Jul 12 2021, 17:09.
full renaming of directions : r->x, z->y
7a98af60b90a
·Ahoffmann on Jul 12 2021, 14:05.

Jul 6 2021

matlab scripts update
089bc1ca8e5b
·Ahoffmann on Jul 6 2021, 10:39.

Jun 15 2021

scripts updates
bb7b5ed9b9f1
·Ahoffmann on Jun 15 2021, 14:06.

Jun 7 2021

scripts update
b0ff0dd6eb0e
·Ahoffmann on Jun 7 2021, 14:40.

Jun 1 2021

Matlab scripts update
efef5834de83
·Ahoffmann on Jun 1 2021, 09:50.

May 17 2021

update matlab setup and postprocessing scripts
e1aafe9a98d8
·Ahoffmann on May 17 2021, 15:40.

Apr 20 2021

scripts update
6e9d3d51b66c
·Ahoffmann on Apr 20 2021, 10:22.

Apr 12 2021

scripts update
7b770777f0a7
·Ahoffmann on Apr 12 2021, 11:20.
New scripts to run on Izar cluster
e12f52de11eb
·Ahoffmann on Apr 12 2021, 11:20.

Apr 6 2021

Scripts update
b51bfde66224
·Ahoffmann on Apr 6 2021, 09:03.

Apr 1 2021

scripts updates
05dc14e817ec
·Ahoffmann on Apr 1 2021, 13:32.

Mar 31 2021

Scripts to generate collision matrix using COSOlver given a grid
5b04f7e612ed
·Ahoffmann on Mar 31 2021, 16:28.

Mar 18 2021

Add the PREFIX and SUFFIX options to add some naming
a143890d3612
·Ahoffmann on Mar 18 2021, 15:23.
new script to measure 2D scaling parallel performances
c997f40de913
·Ahoffmann on Mar 18 2021, 15:22.
Adding processing directly in the code in order to reduce output
fb5e50f8993c
·Ahoffmann on Mar 18 2021, 08:45.

Mar 16 2021

removed Sapj output analysis
afc1673539d1
·Ahoffmann on Mar 16 2021, 11:51.
update scripts
176447b078b3
·Ahoffmann on Mar 16 2021, 10:06.

Mar 15 2021

scripts update
6ec191e58be1
·Ahoffmann on Mar 15 2021, 16:25.
Added an option to start with only noise in phi for smoother starts
dd62fee629cf
·Ahoffmann on Mar 15 2021, 16:10.

Mar 3 2021

update scripts
5caf879b882a
·Ahoffmann on Mar 3 2021, 11:24.

Mar 1 2021

Particle flux is now computed from fourier coefficient directly
5a93fd3816a4
·Ahoffmann on Mar 1 2021, 10:58.
New scripts for Marconi and Piz Daint HPC
0e7f77639707
·Ahoffmann on Mar 1 2021, 10:57.

Feb 23 2021

implemented a new method to compute radial particle flux
8458c0bf5c75
·Ahoffmann on Feb 23 2021, 16:53.
Merge branch 'master' of ssh://c4science.ch/source/HeLaZ
44c272cce95d
·Ahoffmann on Feb 23 2021, 09:10.
adapt ppb110 script
79defc3dbd4e
·Ahoffmann on Feb 23 2021, 09:10.

Feb 22 2021

typos
876faca03ef6
·Ahoffmann on Feb 22 2021, 18:13.
module specification for PPB110
65f1393b7560
·Ahoffmann on Feb 22 2021, 14:31.
typo
8be81b270ec4
·Ahoffmann on Feb 22 2021, 13:49.
typos
4de76beba6c1
·Ahoffmann on Feb 22 2021, 13:43.
adapting for ppb110
f85ae2db7c6e
·Ahoffmann on Feb 22 2021, 13:41.
adapting for PPB110
8b22437bf1f4
·Ahoffmann on Feb 22 2021, 13:40.
test case
9fc570b68aa3
·Ahoffmann on Feb 22 2021, 12:04.
Wrote a script to run job on PPB110 slurm manager
ea258e69bcd8
·Ahoffmann on Feb 22 2021, 11:59.
scripts update
03a6473f44ea
·Ahoffmann on Feb 22 2021, 11:11.

Feb 19 2021

removed unused p_damped j_damped
5e7f506d8d49
·Ahoffmann on Feb 19 2021, 15:13.
scripts update
2a5f329a8148
·Ahoffmann on Feb 19 2021, 11:20.

Feb 12 2021

typo
8b0e1eed463e
·Ahoffmann on Feb 12 2021, 16:00.
correction on Napj diagnostic
20f0096c6b30
·Ahoffmann on Feb 12 2021, 09:21.

Jan 15 2021

update scripts
9c460ecf6b6e
·Ahoffmann on Jan 15 2021, 14:32.

Jan 13 2021

Cleaning and ordering wk and matlab directories
969a1081e04c
·Ahoffmann on Jan 13 2021, 10:18.

Jan 12 2021

update matlab scripts
d1b82f9414b6
·Ahoffmann on Jan 12 2021, 15:47.

Jan 11 2021

minor changes
7d0311467057
·Ahoffmann on Jan 11 2021, 17:05.
Scripts updates
a2d76ab7d25a
·Ahoffmann on Jan 11 2021, 10:30.
Renaming the script for testing new features
21c41677481e
·Ahoffmann on Jan 11 2021, 09:27.

Jan 8 2021

debug linear 1D run
4136d4f51527
·Ahoffmann on Jan 8 2021, 14:36.

Jan 5 2021

gif label correction
bdb19df49367
·Ahoffmann on Jan 5 2021, 14:10.
interface change
ccf2889f88bd
·Ahoffmann on Jan 5 2021, 13:36.

Jan 4 2021

clean up
17244ee7e9a9
·Ahoffmann on Jan 4 2021, 13:56.

Dec 18 2020

move matlab auxiliary script
492966862e31
·Ahoffmann on Dec 18 2020, 15:02.

Dec 15 2020

saving data is disabled by negative nsave now
355bb4bf67dc
·Ahoffmann on Dec 15 2020, 18:00.
Update on diagnostics : if nsave_nd = 0, no initial diagnostic anymore
78e603d998d7
·Ahoffmann on Dec 15 2020, 17:40.
scripts minor updates
dd16468815ab
·Ahoffmann on Dec 15 2020, 14:25.

Dec 14 2020

automatic reading of execution time per Nproc
8dd2f3189f27
·Ahoffmann on Dec 14 2020, 11:29.
update results
a8e24f8ee529
·Ahoffmann on Dec 14 2020, 09:03.
Added checkpoint saving rate as input parameter
84c2069410ca
·Ahoffmann on Dec 14 2020, 09:03.

Dec 10 2020

Change file management, the code is run directly from the results folder
2ae84092f813
·Ahoffmann on Dec 10 2020, 17:13.

Dec 8 2020

scripts updates
a198a66dc93b
·Ahoffmann on Dec 8 2020, 17:08.
minor changes
e6163d711d35
·Ahoffmann on Dec 8 2020, 09:39.

Dec 7 2020

rm fort.90
727ea3f7654d
·Ahoffmann on Dec 7 2020, 18:02.
rm .sh
39f029945fb6
·Ahoffmann on Dec 7 2020, 18:01.
Interface for Marconi's cluster
abfcbe62cf8d
·Ahoffmann on Dec 7 2020, 16:08.
minor changes
7a631a931c3d
·Ahoffmann on Dec 7 2020, 16:08.

Nov 27 2020

portability update
ced9844792bf
·Ahoffmann on Nov 27 2020, 17:18.
minor changes
fde3f884b0a2
·Ahoffmann on Nov 27 2020, 14:06.

Nov 25 2020

Script to run small tests for parallel implementation
9f79de85cc32
·Ahoffmann on Nov 25 2020, 08:25.
minor changes
1f062a19a565
·Ahoffmann on Nov 25 2020, 08:24.

Nov 24 2020

compiles and seems to work fine. Tests ahead
b37744a10054
·Ahoffmann on Nov 24 2020, 15:00.

Nov 23 2020

does not work
00337f61ecda
·Ahoffmann on Nov 23 2020, 16:28.

Nov 18 2020

First MPI version (not working)
003c315a1937
·Ahoffmann on Nov 18 2020, 08:41.

Nov 2 2020

No more r,z grid bluiding since not used
b33a417fe2ce
·Ahoffmann on Nov 2 2020, 15:55.
Analysis of particle flux, compilation of multiple simulation results
082542559175
·Ahoffmann on Nov 2 2020, 14:33.
minor changes
1315f97a27f2
·Ahoffmann on Nov 2 2020, 14:33.

Oct 30 2020

Notes about value found on stationary particle flux
0d63936a1cc4
·Ahoffmann on Oct 30 2020, 15:49.
Load each job to compile all results
244f33d40a56
·Ahoffmann on Oct 30 2020, 15:48.
Utility changes
3e3e44816111
·Ahoffmann on Oct 30 2020, 15:48.
Script to run linear analysis
19040def75a8
·Ahoffmann on Oct 30 2020, 15:48.
Statistical analysis and 3D plots in phase space
f916da899a9b
·Ahoffmann on Oct 30 2020, 15:47.
Changed results folder organisation
152777100d90
·Ahoffmann on Oct 30 2020, 15:47.

Oct 28 2020

Script for linear growth rate study
adb08d06cf9f
·Ahoffmann on Oct 28 2020, 10:39.

Oct 27 2020

minor changes
9a0050373a7a
·Ahoffmann on Oct 27 2020, 11:42.
minor changes
b1b0b4c27f38
·Ahoffmann on Oct 27 2020, 10:48.
Scripts to study behavior of computational cost w.r.t. parameters
ad4e64eaf6f0
·Ahoffmann on Oct 27 2020, 10:48.
Separation between loading results and post processing
4edaa07d6309
·Ahoffmann on Oct 27 2020, 10:47.
Separation of parameters input scripts and fort.90 writing in matlab
ccb7ee45a4c2
·Ahoffmann on Oct 27 2020, 10:47.

Oct 22 2020

Included a setup with sinusoidal background ES pot and density for KH
56b9dafb082c
·Ahoffmann on Oct 22 2020, 14:15.

Oct 5 2020

sc
efffb3dc0f40
·Ahoffmann on Oct 5 2020, 15:19.
sc
41ec3009e51d
·Ahoffmann on Oct 5 2020, 14:52.
HeLaZ can now run in 1D over kz for growth rate study as MOLI
5b5157b79b2f
·Ahoffmann on Oct 5 2020, 14:52.
put kz > 0 instead of kr > 0
06b78cf31a87
·Ahoffmann on Oct 5 2020, 10:20.
sc
01095795c37f
·Ahoffmann on Oct 5 2020, 10:02.
slight changes
815be2d82380
·Ahoffmann on Oct 5 2020, 09:59.

Sep 30 2020

Added non linear term and convolution through DFT with FFTW3
c039548751be
·Ahoffmann on Sep 30 2020, 17:31.
Backup before putting non linear solver
e04f06e1e9b9
·Ahoffmann on Sep 30 2020, 08:28.

Jul 10 2020

refresh
1351911bf756
·Ahoffmann on Jul 10 2020, 09:19.
aim for comparison between non linear HeLaZ method and a matlab method
0eaffa972659
·Ahoffmann on Jul 10 2020, 09:17.
evolve moments on a 2D k grid
513bd7bb76e0
·Ahoffmann on Jul 10 2020, 09:17.
routines for the non linear term
3a65bf26b154
·Ahoffmann on Jul 10 2020, 09:16.

gyacomo/wk3D71b098bf2e56713f1f59772…

Jul 14 2021

Jul 13 2021

Jul 12 2021

Jul 6 2021

Jun 15 2021

Jun 7 2021

Jun 1 2021

May 17 2021

Apr 20 2021

Apr 12 2021

Apr 6 2021

Apr 1 2021

Mar 31 2021

Mar 18 2021

Mar 16 2021

Mar 15 2021

Mar 3 2021

Mar 1 2021

Feb 23 2021

Feb 22 2021

Feb 19 2021

Feb 12 2021

Jan 15 2021

Jan 13 2021

Jan 12 2021

Jan 11 2021

Jan 8 2021

Jan 5 2021

Jan 4 2021

Dec 18 2020

Dec 15 2020

Dec 14 2020

Dec 10 2020

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Dec 7 2020

Nov 27 2020

Nov 25 2020

Nov 24 2020

Nov 23 2020

Nov 18 2020

Nov 2 2020

Oct 30 2020

Oct 28 2020

Oct 27 2020

Oct 22 2020

Oct 5 2020

Sep 30 2020

Jul 10 2020

gyacomo/wk
3D71b098bf2e56713f1f59772…