Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (3D_parallel) History

History
3D_parallel59fa66532c426ae9d50c98f…

May 17 2021

Added ZF initialization option
59fa66532c42
·Ahoffmann on May 17 2021, 16:08.
renamed inital background and noise variables
4a6a43b6c612
·Ahoffmann on May 17 2021, 15:55.
Source flag to remove ei ie collision terms
1a41c14b0cd5
·Ahoffmann on May 17 2021, 15:53.
update matlab setup and postprocessing scripts
e1aafe9a98d8
·Ahoffmann on May 17 2021, 15:40.
removed gallery folder
288c9e0d46cf
·Ahoffmann on May 17 2021, 15:40.
removed phi demo
ddac761393b9
·Ahoffmann on May 17 2021, 15:39.

May 4 2021

Typo
20f2ab777d1e
·Ahoffmann on May 4 2021, 08:39.

Apr 23 2021

small module link correction
537d05e69259
·Ahoffmann on Apr 23 2021, 13:56.
simplification of the code
46c819e0cb3d
·Ahoffmann on Apr 23 2021, 13:52.
COSOlver matrices are asked up to 2/3 kperpmax (since AA on larger k)
607caa60fa17
·Ahoffmann on Apr 23 2021, 13:52.
diagnostic to have a cp at tf if no crash
e7b01d2ad565
·Ahoffmann on Apr 23 2021, 09:46.

Apr 20 2021

typo correction
0d368ce61695
·Ahoffmann on Apr 20 2021, 10:48.
variable flag COMPUTE_ONLY_EVEN_P renamed
3a8d34ffde9d
·Ahoffmann on Apr 20 2021, 10:46.
typo
6474c3489b77
·Ahoffmann on Apr 20 2021, 10:46.
update roadmap
e43a91f5e4b0
·Ahoffmann on Apr 20 2021, 10:27.
scripts update
6e9d3d51b66c
·Ahoffmann on Apr 20 2021, 10:22.
changed the writing in advancing the moments
ccc455f2aed9
·Ahoffmann on Apr 20 2021, 10:22.
terminal info to know restart time
22e728b541f5
·Ahoffmann on Apr 20 2021, 10:21.
removing other closure methods, only truncation is available
72eb238244b3
·Ahoffmann on Apr 20 2021, 10:20.
implicit, lighter writing of loops
7398d80ef1f5
·Ahoffmann on Apr 20 2021, 10:19.

Apr 19 2021

typo in Pi,Ji parameters writing
d047f3366b4b
·Ahoffmann on Apr 19 2021, 16:55.

Apr 15 2021

removed iCa folder from tracking
94fb4a4ba8fb
·Ahoffmann on Apr 15 2021, 14:51.
removed debug outputs
dcf46dd9e179
·Ahoffmann on Apr 15 2021, 14:50.
Avoid calling MPI comm routines if only one proc in p
c9f1103728f4
·Ahoffmann on Apr 15 2021, 11:48.

Apr 14 2021

Added a flag to know if the process has kr=0 data or not
2837b818d3ff
·Ahoffmann on Apr 14 2021, 11:46.

Apr 13 2021

removed world_rank and world_size variables
65812b944391
·Ahoffmann on Apr 13 2021, 17:50.
typo
8014eafcf31d
·Ahoffmann on Apr 13 2021, 17:50.
Update intrinsic comput. time profiler
0d926a200cfc
·Ahoffmann on Apr 13 2021, 16:13.
cleaning
956e78c3dab9
·Ahoffmann on Apr 13 2021, 15:33.
comments and correction of Sapj computed before dnjs
e5be3acc0e29
·Ahoffmann on Apr 13 2021, 15:33.
Changed the order in do to have all fields updated at end of step
402b540ead7e
·Ahoffmann on Apr 13 2021, 15:32.
makefile adaptation for piz-daint
2afc4f7ed3fb
·Ahoffmann on Apr 13 2021, 09:13.
SUgama operator implementation
ec6703038b27
·Ahoffmann on Apr 13 2021, 08:59.

Apr 12 2021

naming change of comm_r to comm_kr
c7fa939998c0
·Ahoffmann on Apr 12 2021, 11:22.
naming change of comm_r to comm_kr
9573a9db3bde
·Ahoffmann on Apr 12 2021, 11:21.
scripts update
7b770777f0a7
·Ahoffmann on Apr 12 2021, 11:20.
New scripts to run on Izar cluster
e12f52de11eb
·Ahoffmann on Apr 12 2021, 11:20.

Apr 6 2021

format
96b4a6fd188b
·Ahoffmann on Apr 6 2021, 09:33.
Merge branch 'master' of ssh://c4science.ch/source/HeLaZ
d20425289991
·Ahoffmann on Apr 6 2021, 09:32.
format correction
658c6d08c83d
·Ahoffmann on Apr 6 2021, 09:32.
format edition
d7a9164c3bd1
·Ahoffmann on Apr 6 2021, 09:30.
format correction
0bfe730cc390
·Ahoffmann on Apr 6 2021, 09:26.
Separation between road map (future) and changelog (past)
4620942fb043
·Ahoffmann on Apr 6 2021, 09:25.
correct readme
9c4cb5a1bc03
·Ahoffmann on Apr 6 2021, 09:19.
correct readme
650a19fc4e65
·Ahoffmann on Apr 6 2021, 09:17.
Merge branch 'master' of ssh://c4science.ch/source/HeLaZ
b7ee210e8601
·Ahoffmann on Apr 6 2021, 09:17.
update roadmap
6407160b12cb
·Ahoffmann on Apr 6 2021, 09:16.
update roadmap
e0f1973e4234
·Ahoffmann on Apr 6 2021, 09:15.
change logbook to roadmap and HeLaZ year
690135745eb2
·Ahoffmann on Apr 6 2021, 09:15.
update readme
452e8a993fd2
·Ahoffmann on Apr 6 2021, 09:14.
Update readme for HeLaZ 2.5
663259d809f5
·Ahoffmann on Apr 6 2021, 09:09.
Scripts update
b51bfde66224
·Ahoffmann on Apr 6 2021, 09:03.

Apr 1 2021

scripts updates
05dc14e817ec
·Ahoffmann on Apr 1 2021, 13:32.
renaming of variables
3703264f4929
·Ahoffmann on Apr 1 2021, 13:31.
GK Cosolver update and collision routines
54c0213dedbc
·Ahoffmann on Apr 1 2021, 13:29.
New parameter to control the non linear sum truncations
a5eb6ee58d19
·Ahoffmann on Apr 1 2021, 13:25.

Mar 31 2021

update for COSOlver matrices in DK and GK approach + nmax of nonlin sum
58aaf1ad253e
·Ahoffmann on Mar 31 2021, 16:30.
change of value for flag CO
c8ddcc8b70e7
·Ahoffmann on Mar 31 2021, 16:29.
adapted for 0D output
0b542b7d557b
·Ahoffmann on Mar 31 2021, 16:28.
small correction
938602b2105e
·Ahoffmann on Mar 31 2021, 16:28.
Scripts to generate collision matrix using COSOlver given a grid
5b04f7e612ed
·Ahoffmann on Mar 31 2021, 16:28.

Mar 18 2021

Add the PREFIX and SUFFIX options to add some naming
a143890d3612
·Ahoffmann on Mar 18 2021, 15:23.
new script to measure 2D scaling parallel performances
c997f40de913
·Ahoffmann on Mar 18 2021, 15:22.
Adding processing directly in the code in order to reduce output
fb5e50f8993c
·Ahoffmann on Mar 18 2021, 08:45.

Mar 16 2021

no 5D output at t=0
103674a8b230
·Ahoffmann on Mar 16 2021, 15:32.
organized better time measurement
3bc306413732
·Ahoffmann on Mar 16 2021, 11:51.
removed Sapj output
d37a83fd8569
·Ahoffmann on Mar 16 2021, 11:51.
removed Sapj output analysis
afc1673539d1
·Ahoffmann on Mar 16 2021, 11:51.
add num proc p and kr in hdf5
6015df684365
·Ahoffmann on Mar 16 2021, 10:43.
update scripts
176447b078b3
·Ahoffmann on Mar 16 2021, 10:06.

Mar 15 2021

typo
edcfcb45adc6
·Ahoffmann on Mar 15 2021, 17:31.
gray is nicer
107bbcf3c015
·Ahoffmann on Mar 15 2021, 17:31.
Change the output organization, grid is now written once
fd805cf83a36
·Ahoffmann on Mar 15 2021, 16:38.
Update 2.4
854249224fcd
·Ahoffmann on Mar 15 2021, 16:28.
Put all the advance fields in a routine for clarity in the time loop
71102757537b
·Ahoffmann on Mar 15 2021, 16:26.
scripts update
6ec191e58be1
·Ahoffmann on Mar 15 2021, 16:25.
restart functions to load a state from an older sim
2fdcd01a63eb
·Ahoffmann on Mar 15 2021, 16:25.
typo in the sign
6e62367cb401
·Ahoffmann on Mar 15 2021, 16:23.
Allocation of Na00 arrays for diagnostics in 2D parallel
56e0b1bf214f
·Ahoffmann on Mar 15 2021, 16:23.
Replaced only Na00 start option with phi start option
5ebc1b03d646
·Ahoffmann on Mar 15 2021, 16:23.
Initialization on phi only is now possible, restart functions are moved
39cf2ca15e7e
·Ahoffmann on Mar 15 2021, 16:22.
2D parallel distribution
b6c9fd757683
·Ahoffmann on Mar 15 2021, 16:21.
Update ghosts cells exchange for parallel 2D
f85f7606acc0
·Ahoffmann on Mar 15 2021, 16:21.
Change of communication mean for 2D parallel
639ccdd11e81
·Ahoffmann on Mar 15 2021, 16:21.
Adapted for 2D data distribution on p and kr
4d49927500de
·Ahoffmann on Mar 15 2021, 16:20.
comment
62d467fd7b40
·Ahoffmann on Mar 15 2021, 16:20.
Option to skip p=odd computation since odds are 0. + typo
629a0a276e4a
·Ahoffmann on Mar 15 2021, 16:19.
Corrections of Dougherty operator
5ed2781da4fe
·Ahoffmann on Mar 15 2021, 16:19.
Broadcast from rank_p 0 to all other p processes for phi computation
690e56402ef4
·Ahoffmann on Mar 15 2021, 16:12.
Adaptation for 2D parallel runs with mpi along p and kr
2799bb019144
·Ahoffmann on Mar 15 2021, 16:12.
added output of the parallel setup in terminal
bd7c9676eebc
·Ahoffmann on Mar 15 2021, 16:11.
New field to write 00 moments in parallel through gathering
ccd109dfc729
·Ahoffmann on Mar 15 2021, 16:11.
Added an option to start with only noise in phi for smoother starts
dd62fee629cf
·Ahoffmann on Mar 15 2021, 16:10.
Timer for communications
18dbca68d0c9
·Ahoffmann on Mar 15 2021, 16:09.
added closure in parameters to load
d01976674558
·Ahoffmann on Mar 15 2021, 16:08.
adding the new modules for ghosts and restarts
131ce7214fd8
·Ahoffmann on Mar 15 2021, 16:08.
Imaginary unit was not written in double precision
dc0bae856e8b
·Ahoffmann on Mar 15 2021, 16:07.

Mar 3 2021

post processing fixing
031ca67ff941
·Ahoffmann on Mar 3 2021, 11:24.
update scripts
5caf879b882a
·Ahoffmann on Mar 3 2021, 11:24.
start of parallel along p
503fa0fa9f96
·Ahoffmann on Mar 3 2021, 11:23.

History3D_parallel59fa66532c426ae9d50c98f…

May 17 2021

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Apr 19 2021

Apr 15 2021

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Mar 15 2021

Mar 3 2021

History
3D_parallel59fa66532c426ae9d50c98f…