Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (3D_parallel) History

History
3D_parallel9c460ecf6b6e14f09695c91…

Jan 15 2021

update scripts
9c460ecf6b6e
·Ahoffmann on Jan 15 2021, 14:32.

Jan 13 2021

Put DK Full Coulomb CO in collision mode as a routine
bf9d0b0f34e4
·Ahoffmann on Jan 13 2021, 11:23.
Cleaning and ordering wk and matlab directories
969a1081e04c
·Ahoffmann on Jan 13 2021, 10:18.

Jan 12 2021

comments
8fe6558f23e1
·Ahoffmann on Jan 12 2021, 15:48.
cleaning
5a9a047c007b
·Ahoffmann on Jan 12 2021, 15:48.
Split moment_eq_rhs in two routines (i,e)
5a4c7c3cef78
·Ahoffmann on Jan 12 2021, 15:48.
GK dougherty is added
bb9d57674ec6
·Ahoffmann on Jan 12 2021, 15:47.
update matlab scripts
d1b82f9414b6
·Ahoffmann on Jan 12 2021, 15:47.
moved precomputed factors from stepon routines to model
17aae9e64a04
·Ahoffmann on Jan 12 2021, 11:51.
Start writing collision operator in a separated module
9bea36bdb7f8
·Ahoffmann on Jan 12 2021, 11:50.

Jan 11 2021

more output for initialization
2293a9c3b745
·Ahoffmann on Jan 11 2021, 17:18.
Use precomputed Kernel and closed truncation at Jmax
93124e150641
·Ahoffmann on Jan 11 2021, 17:07.
Kernel precomputation
5048603059f1
·Ahoffmann on Jan 11 2021, 17:05.
minor changes
7d0311467057
·Ahoffmann on Jan 11 2021, 17:05.
Debugging 1D linear
5c727b907e8a
·Ahoffmann on Jan 11 2021, 10:33.
AA modification in Convolution_2D (unused)
c3598dd51b12
·Ahoffmann on Jan 11 2021, 10:33.
One big FC file is now sufficient to load FC mat
40f1c5fdc83e
·Ahoffmann on Jan 11 2021, 10:32.
Debugging 1D linear simulations
e0c629f83f22
·Ahoffmann on Jan 11 2021, 10:31.
Scripts updates
a2d76ab7d25a
·Ahoffmann on Jan 11 2021, 10:30.
Renaming the script for testing new features
21c41677481e
·Ahoffmann on Jan 11 2021, 09:27.

Jan 8 2021

anticipated kernel evaluation
9db4099151a2
·Ahoffmann on Jan 8 2021, 17:46.
delete redundancy
fd6474e8eeeb
·Ahoffmann on Jan 8 2021, 17:44.
AA changed and collision organisation
6a35ad177752
·Ahoffmann on Jan 8 2021, 17:41.
unused
89bbd38a7116
·Ahoffmann on Jan 8 2021, 15:18.
debug linear 1D run
4136d4f51527
·Ahoffmann on Jan 8 2021, 14:36.

Jan 5 2021

gif label correction
bdb19df49367
·Ahoffmann on Jan 5 2021, 14:10.
interface change
ccf2889f88bd
·Ahoffmann on Jan 5 2021, 13:36.
slight output change
d13bdf7310d1
·Ahoffmann on Jan 5 2021, 13:36.
Prevent bad ikzs ikze allocation for last process id
cca109703c19
·Ahoffmann on Jan 5 2021, 13:36.

Jan 4 2021

Use a MPI_ALLREDUCE for exit condition
9057de439c4a
·Ahoffmann on Jan 4 2021, 17:19.
comments
65c26e60a5ec
·Ahoffmann on Jan 4 2021, 17:19.
clean up
17244ee7e9a9
·Ahoffmann on Jan 4 2021, 13:56.

Dec 18 2020

move matlab auxiliary script
492966862e31
·Ahoffmann on Dec 18 2020, 15:02.

Dec 17 2020

update finish conditions
92ffdefc40b2
·Ahoffmann on Dec 17 2020, 15:45.
improve finish conditions for MPI
8330ee6bacdb
·Ahoffmann on Dec 17 2020, 15:07.

Dec 15 2020

saving data is disabled by negative nsave now
355bb4bf67dc
·Ahoffmann on Dec 15 2020, 18:00.
remove write_field flags
accf2cc1dcaa
·Ahoffmann on Dec 15 2020, 17:42.
Merge branch 'master' of ssh://c4science.ch/source/HeLaZ
5b18627b1653
·Ahoffmann on Dec 15 2020, 17:40.
Update on diagnostics : if nsave_nd = 0, no initial diagnostic anymore
78e603d998d7
·Ahoffmann on Dec 15 2020, 17:40.
Update on diagnostics : if nsave_nd = 0, no initial diagnostic anymore
8e5b01688b3b
·Ahoffmann on Dec 15 2020, 17:39.
to retrieve phase space distribution function
4a65992df0a0
·Ahoffmann on Dec 15 2020, 17:35.
Exit 10% earlier than the CPU time asked to ensure final diagnostics
a60ba8910732
·Ahoffmann on Dec 15 2020, 14:48.
update roadmap
28963d05d1d3
·Ahoffmann on Dec 15 2020, 14:29.
removed unused variables KR0KH A0KH and CANCEL_ODD_P
41717707cd69
·Ahoffmann on Dec 15 2020, 14:26.
scripts minor updates
dd16468815ab
·Ahoffmann on Dec 15 2020, 14:25.
Add a intern wallclock runtime end condition to avoid enforced slurm end
8236765d977c
·Ahoffmann on Dec 15 2020, 14:25.

Dec 14 2020

automatic reading of execution time per Nproc
8dd2f3189f27
·Ahoffmann on Dec 14 2020, 11:29.
display run time in second as well at the end
94c8c998dd6c
·Ahoffmann on Dec 14 2020, 11:28.
write the number of process in output file
e7303f1d020e
·Ahoffmann on Dec 14 2020, 09:33.
update results
a8e24f8ee529
·Ahoffmann on Dec 14 2020, 09:03.
Added checkpoint saving rate as input parameter
84c2069410ca
·Ahoffmann on Dec 14 2020, 09:03.

Dec 10 2020

Change file management, the code is run directly from the results folder
2ae84092f813
·Ahoffmann on Dec 10 2020, 17:13.
Resolved a bug on checkpoint saves and reload
d557efa46891
·Ahoffmann on Dec 10 2020, 17:12.

Dec 9 2020

resolving shock when restart
6312425216de
·Ahoffmann on Dec 9 2020, 12:05.

Dec 8 2020

scripts updates
a198a66dc93b
·Ahoffmann on Dec 8 2020, 17:08.
adapted for opt Sapj
a8c67f701e16
·Ahoffmann on Dec 8 2020, 17:08.
avoid spamming ad the end of sim if exit normal
01174c61bab9
·Ahoffmann on Dec 8 2020, 17:07.
Optimized version of nonlinear term computation
6640dd9ffb14
·Ahoffmann on Dec 8 2020, 17:07.
added lign to uncomment for marconi
44b3a3e086e5
·Ahoffmann on Dec 8 2020, 17:07.
minor changes
e6163d711d35
·Ahoffmann on Dec 8 2020, 09:39.

Dec 7 2020

change fftw lib directory
f5fae1173c2a
·Ahoffmann on Dec 7 2020, 18:24.
change fftw lib directory
c308cc2fa91b
·Ahoffmann on Dec 7 2020, 18:20.
rm fort.90
727ea3f7654d
·Ahoffmann on Dec 7 2020, 18:02.
rm .sh
39f029945fb6
·Ahoffmann on Dec 7 2020, 18:01.
MC
b76b7e3fc6b9
·Ahoffmann on Dec 7 2020, 17:47.
MC
59cd7bfb1e50
·Ahoffmann on Dec 7 2020, 17:46.
MC
1bacc0d864c1
·Ahoffmann on Dec 7 2020, 17:44.
MC
41856e03467f
·Ahoffmann on Dec 7 2020, 17:37.
Merge branch 'MPI' of ssh://c4science.ch/source/HeLaZ into MPI
b875de2bba5e
·Ahoffmann on Dec 7 2020, 17:27.
minor changes
93c81128ac73
·Ahoffmann on Dec 7 2020, 17:27.
minor changes
12e7a447e5e5
·Ahoffmann on Dec 7 2020, 17:26.
ignore srcinfo.h
841d98c1406b
·Ahoffmann on Dec 7 2020, 17:25.
put srcinfo folder
b8b2ce8faa89
·Ahoffmann on Dec 7 2020, 16:20.
ignore bash script since generated by matlab
94d46b40492c
·Ahoffmann on Dec 7 2020, 16:12.
Remove local directory from git
a5148e159df6
·Ahoffmann on Dec 7 2020, 16:11.
Interface for Marconi's cluster
abfcbe62cf8d
·Ahoffmann on Dec 7 2020, 16:08.
minor changes
7a631a931c3d
·Ahoffmann on Dec 7 2020, 16:08.
update gitignore
20656848698d
·Ahoffmann on Dec 7 2020, 16:06.
correction needed for linear simulations
d9b34ecf7d29
·Ahoffmann on Dec 7 2020, 16:05.
Remove unnecessary mpi barrier
86f4c0a79747
·Ahoffmann on Dec 7 2020, 16:05.
for Marconi protability
83d1bb824dda
·Ahoffmann on Dec 7 2020, 16:03.

Nov 27 2020

Marconi makefile version
15a591afc00b
·• Antoinehoff on Nov 27 2020, 17:26.
portability
4e70c2e2e2c8
·Ahoffmann on Nov 27 2020, 17:24.
portability update
ced9844792bf
·Ahoffmann on Nov 27 2020, 17:18.
managing portability
8dcebe03b67e
·Ahoffmann on Nov 27 2020, 15:30.
minor changes
fde3f884b0a2
·Ahoffmann on Nov 27 2020, 14:06.

Nov 25 2020

solved checkpoint restart for parallel. Commented unused sections
2c9ad2089b45
·Ahoffmann on Nov 25 2020, 11:08.
put optimized compilation
8d91014b31a3
·Ahoffmann on Nov 25 2020, 11:07.
Script to run small tests for parallel implementation
9f79de85cc32
·Ahoffmann on Nov 25 2020, 08:25.
minor changes
1f062a19a565
·Ahoffmann on Nov 25 2020, 08:24.

Nov 24 2020

Update roadmap
9ff48d1d1f46
·Ahoffmann on Nov 24 2020, 15:07.
compiles and seems to work fine. Tests ahead
b37744a10054
·Ahoffmann on Nov 24 2020, 15:00.

Nov 23 2020

does not work
00337f61ecda
·Ahoffmann on Nov 23 2020, 16:28.

Nov 18 2020

First MPI version (not working)
003c315a1937
·Ahoffmann on Nov 18 2020, 08:41.

Nov 2 2020

update gitignore
8775464b4dc2
·Ahoffmann on Nov 2 2020, 15:56.
update gitignore
05c98732c208
·Ahoffmann on Nov 2 2020, 15:55.
No more r,z grid bluiding since not used
b33a417fe2ce
·Ahoffmann on Nov 2 2020, 15:55.
update roadmap
f6ac57c618a7
·Ahoffmann on Nov 2 2020, 14:34.
Analysis of particle flux, compilation of multiple simulation results
082542559175
·Ahoffmann on Nov 2 2020, 14:33.
minor changes
1315f97a27f2
·Ahoffmann on Nov 2 2020, 14:33.

History3D_parallel9c460ecf6b6e14f09695c91…

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Dec 15 2020

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History
3D_parallel9c460ecf6b6e14f09695c91…