Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (3D_parallel) History

gyacomo/src
3D_parallel59fa66532c426ae9d50c98f…

May 17 2021

Added ZF initialization option
59fa66532c42
·Ahoffmann on May 17 2021, 16:08.
renamed inital background and noise variables
4a6a43b6c612
·Ahoffmann on May 17 2021, 15:55.
Source flag to remove ei ie collision terms
1a41c14b0cd5
·Ahoffmann on May 17 2021, 15:53.

May 4 2021

Typo
20f2ab777d1e
·Ahoffmann on May 4 2021, 08:39.

Apr 23 2021

simplification of the code
46c819e0cb3d
·Ahoffmann on Apr 23 2021, 13:52.
COSOlver matrices are asked up to 2/3 kperpmax (since AA on larger k)
607caa60fa17
·Ahoffmann on Apr 23 2021, 13:52.
diagnostic to have a cp at tf if no crash
e7b01d2ad565
·Ahoffmann on Apr 23 2021, 09:46.

Apr 20 2021

typo correction
0d368ce61695
·Ahoffmann on Apr 20 2021, 10:48.
variable flag COMPUTE_ONLY_EVEN_P renamed
3a8d34ffde9d
·Ahoffmann on Apr 20 2021, 10:46.
typo
6474c3489b77
·Ahoffmann on Apr 20 2021, 10:46.
changed the writing in advancing the moments
ccc455f2aed9
·Ahoffmann on Apr 20 2021, 10:22.
terminal info to know restart time
22e728b541f5
·Ahoffmann on Apr 20 2021, 10:21.
removing other closure methods, only truncation is available
72eb238244b3
·Ahoffmann on Apr 20 2021, 10:20.
implicit, lighter writing of loops
7398d80ef1f5
·Ahoffmann on Apr 20 2021, 10:19.

Apr 19 2021

typo in Pi,Ji parameters writing
d047f3366b4b
·Ahoffmann on Apr 19 2021, 16:55.

Apr 15 2021

removed debug outputs
dcf46dd9e179
·Ahoffmann on Apr 15 2021, 14:50.
Avoid calling MPI comm routines if only one proc in p
c9f1103728f4
·Ahoffmann on Apr 15 2021, 11:48.

Apr 14 2021

Added a flag to know if the process has kr=0 data or not
2837b818d3ff
·Ahoffmann on Apr 14 2021, 11:46.

Apr 13 2021

removed world_rank and world_size variables
65812b944391
·Ahoffmann on Apr 13 2021, 17:50.
typo
8014eafcf31d
·Ahoffmann on Apr 13 2021, 17:50.
Update intrinsic comput. time profiler
0d926a200cfc
·Ahoffmann on Apr 13 2021, 16:13.
cleaning
956e78c3dab9
·Ahoffmann on Apr 13 2021, 15:33.
comments and correction of Sapj computed before dnjs
e5be3acc0e29
·Ahoffmann on Apr 13 2021, 15:33.
Changed the order in do to have all fields updated at end of step
402b540ead7e
·Ahoffmann on Apr 13 2021, 15:32.
SUgama operator implementation
ec6703038b27
·Ahoffmann on Apr 13 2021, 08:59.

Apr 12 2021

naming change of comm_r to comm_kr
c7fa939998c0
·Ahoffmann on Apr 12 2021, 11:22.
naming change of comm_r to comm_kr
9573a9db3bde
·Ahoffmann on Apr 12 2021, 11:21.

Apr 1 2021

renaming of variables
3703264f4929
·Ahoffmann on Apr 1 2021, 13:31.
GK Cosolver update and collision routines
54c0213dedbc
·Ahoffmann on Apr 1 2021, 13:29.
New parameter to control the non linear sum truncations
a5eb6ee58d19
·Ahoffmann on Apr 1 2021, 13:25.

Mar 18 2021

Adding processing directly in the code in order to reduce output
fb5e50f8993c
·Ahoffmann on Mar 18 2021, 08:45.

Mar 16 2021

no 5D output at t=0
103674a8b230
·Ahoffmann on Mar 16 2021, 15:32.
organized better time measurement
3bc306413732
·Ahoffmann on Mar 16 2021, 11:51.
removed Sapj output
d37a83fd8569
·Ahoffmann on Mar 16 2021, 11:51.
add num proc p and kr in hdf5
6015df684365
·Ahoffmann on Mar 16 2021, 10:43.

Mar 15 2021

Change the output organization, grid is now written once
fd805cf83a36
·Ahoffmann on Mar 15 2021, 16:38.
Put all the advance fields in a routine for clarity in the time loop
71102757537b
·Ahoffmann on Mar 15 2021, 16:26.
restart functions to load a state from an older sim
2fdcd01a63eb
·Ahoffmann on Mar 15 2021, 16:25.
typo in the sign
6e62367cb401
·Ahoffmann on Mar 15 2021, 16:23.
Allocation of Na00 arrays for diagnostics in 2D parallel
56e0b1bf214f
·Ahoffmann on Mar 15 2021, 16:23.
Replaced only Na00 start option with phi start option
5ebc1b03d646
·Ahoffmann on Mar 15 2021, 16:23.
Initialization on phi only is now possible, restart functions are moved
39cf2ca15e7e
·Ahoffmann on Mar 15 2021, 16:22.
2D parallel distribution
b6c9fd757683
·Ahoffmann on Mar 15 2021, 16:21.
Update ghosts cells exchange for parallel 2D
f85f7606acc0
·Ahoffmann on Mar 15 2021, 16:21.
Change of communication mean for 2D parallel
639ccdd11e81
·Ahoffmann on Mar 15 2021, 16:21.
Adapted for 2D data distribution on p and kr
4d49927500de
·Ahoffmann on Mar 15 2021, 16:20.
comment
62d467fd7b40
·Ahoffmann on Mar 15 2021, 16:20.
Option to skip p=odd computation since odds are 0. + typo
629a0a276e4a
·Ahoffmann on Mar 15 2021, 16:19.
Corrections of Dougherty operator
5ed2781da4fe
·Ahoffmann on Mar 15 2021, 16:19.
Broadcast from rank_p 0 to all other p processes for phi computation
690e56402ef4
·Ahoffmann on Mar 15 2021, 16:12.
Adaptation for 2D parallel runs with mpi along p and kr
2799bb019144
·Ahoffmann on Mar 15 2021, 16:12.
added output of the parallel setup in terminal
bd7c9676eebc
·Ahoffmann on Mar 15 2021, 16:11.
New field to write 00 moments in parallel through gathering
ccd109dfc729
·Ahoffmann on Mar 15 2021, 16:11.
Imaginary unit was not written in double precision
dc0bae856e8b
·Ahoffmann on Mar 15 2021, 16:07.

Mar 3 2021

start of parallel along p
503fa0fa9f96
·Ahoffmann on Mar 3 2021, 11:23.

Feb 23 2021

bug fixed in restarting sim
4aa43bbb59a6
·Ahoffmann on Feb 23 2021, 09:01.

Feb 22 2021

Kinetic hyperdiffusion is added
018142a60b27
·Ahoffmann on Feb 22 2021, 11:11.
comments
991ed5bb1c22
·Ahoffmann on Feb 22 2021, 11:11.

Feb 19 2021

removed unused p_damped j_damped
ccdc151349ba
·Ahoffmann on Feb 19 2021, 15:17.
removed unused p_damped j_damped
5e7f506d8d49
·Ahoffmann on Feb 19 2021, 15:13.
started kinetic hyperdiffusivity
d9db1695730e
·Ahoffmann on Feb 19 2021, 11:26.
Bug solved on ghost PJ values
298107696b56
·Ahoffmann on Feb 19 2021, 11:25.
minor changes
637b4a794827
·Ahoffmann on Feb 19 2021, 11:24.
added parameters for kinetic hyperdiffusion
ee6a8760a3ef
·Ahoffmann on Feb 19 2021, 11:24.
Checkpoint loading are done on output file now, bug in write 5D corrected
784baff12d6d
·Ahoffmann on Feb 19 2021, 11:23.
minor changes
8e16d3b4f32c
·Ahoffmann on Feb 19 2021, 11:22.
added copy closure and started semi collisional closure
3deffddb4b8a
·Ahoffmann on Feb 19 2021, 11:22.

Feb 12 2021

typo
8b0e1eed463e
·Ahoffmann on Feb 12 2021, 16:00.
correction on Napj diagnostic
20f0096c6b30
·Ahoffmann on Feb 12 2021, 09:21.

Feb 1 2021

typo on crashed variable
c01895f0ca25
·Ahoffmann on Feb 1 2021, 12:51.
cp at end of sim only if not crashed simulation
de2eb44013a7
·Ahoffmann on Feb 1 2021, 12:12.
Added simulation end checkpoint
e06013d45143
·Ahoffmann on Feb 1 2021, 10:12.

Jan 15 2021

closure and kernel model flags
1ac9de43ef0f
·Ahoffmann on Jan 15 2021, 14:34.
moments boundaries are extended for closure
b82803a09f19
·Ahoffmann on Jan 15 2021, 14:34.
Kernel and closure are put away from rhs
4521ba30593d
·Ahoffmann on Jan 15 2021, 14:33.
One can continue simulation with different PJ now
ca643c9bac92
·Ahoffmann on Jan 15 2021, 14:33.
closure mod adaptation
5437ed07bcaa
·Ahoffmann on Jan 15 2021, 14:33.
module for different closure model
977cd88ed3b8
·Ahoffmann on Jan 15 2021, 14:32.

Jan 13 2021

Put DK Full Coulomb CO in collision mode as a routine
bf9d0b0f34e4
·Ahoffmann on Jan 13 2021, 11:23.

Jan 12 2021

comments
8fe6558f23e1
·Ahoffmann on Jan 12 2021, 15:48.
cleaning
5a9a047c007b
·Ahoffmann on Jan 12 2021, 15:48.
Split moment_eq_rhs in two routines (i,e)
5a4c7c3cef78
·Ahoffmann on Jan 12 2021, 15:48.
GK dougherty is added
bb9d57674ec6
·Ahoffmann on Jan 12 2021, 15:47.
moved precomputed factors from stepon routines to model
17aae9e64a04
·Ahoffmann on Jan 12 2021, 11:51.
Start writing collision operator in a separated module
9bea36bdb7f8
·Ahoffmann on Jan 12 2021, 11:50.

Jan 11 2021

more output for initialization
2293a9c3b745
·Ahoffmann on Jan 11 2021, 17:18.
Use precomputed Kernel and closed truncation at Jmax
93124e150641
·Ahoffmann on Jan 11 2021, 17:07.
Kernel precomputation
5048603059f1
·Ahoffmann on Jan 11 2021, 17:05.
minor changes
7d0311467057
·Ahoffmann on Jan 11 2021, 17:05.
Debugging 1D linear
5c727b907e8a
·Ahoffmann on Jan 11 2021, 10:33.
AA modification in Convolution_2D (unused)
c3598dd51b12
·Ahoffmann on Jan 11 2021, 10:33.
One big FC file is now sufficient to load FC mat
40f1c5fdc83e
·Ahoffmann on Jan 11 2021, 10:32.
Debugging 1D linear simulations
e0c629f83f22
·Ahoffmann on Jan 11 2021, 10:31.

Jan 8 2021

anticipated kernel evaluation
9db4099151a2
·Ahoffmann on Jan 8 2021, 17:46.
delete redundancy
fd6474e8eeeb
·Ahoffmann on Jan 8 2021, 17:44.
AA changed and collision organisation
6a35ad177752
·Ahoffmann on Jan 8 2021, 17:41.
unused
89bbd38a7116
·Ahoffmann on Jan 8 2021, 15:18.

Jan 5 2021

slight output change
d13bdf7310d1
·Ahoffmann on Jan 5 2021, 13:36.
Prevent bad ikzs ikze allocation for last process id
cca109703c19
·Ahoffmann on Jan 5 2021, 13:36.

Jan 4 2021

Use a MPI_ALLREDUCE for exit condition
9057de439c4a
·Ahoffmann on Jan 4 2021, 17:19.

gyacomo/src3D_parallel59fa66532c426ae9d50c98f…

May 17 2021

May 4 2021

Apr 23 2021

Apr 20 2021

Apr 19 2021

Apr 15 2021

Apr 14 2021

Apr 13 2021

Apr 12 2021

Apr 1 2021

Mar 18 2021

Mar 16 2021

Mar 15 2021

Mar 3 2021

Feb 23 2021

Feb 22 2021

Feb 19 2021

Feb 12 2021

Feb 1 2021

Jan 15 2021

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Jan 4 2021

gyacomo/src
3D_parallel59fa66532c426ae9d50c98f…