Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (3D_parallel) History

gyacomo/src
3D_parallela58f14c587be4a93c548971…

Aug 4 2021

Now working for 1D linear analysis
a58f14c587be
·Ahoffmann on Aug 4 2021, 14:01.

Aug 3 2021

sign error
03d92523cdb5
·Ahoffmann on Aug 3 2021, 16:55.
sign error
283e9b4a2fea
·Ahoffmann on Aug 3 2021, 16:53.
sign error
3cb1c3404f59
·Ahoffmann on Aug 3 2021, 16:43.
correction of axis equivalences
0d9918730e27
·Ahoffmann on Aug 3 2021, 16:28.
added shear and inverse aspect ratio as input parameters
27afc84e7653
·Ahoffmann on Aug 3 2021, 14:26.
cosmetic
3511a99ade28
·Ahoffmann on Aug 3 2021, 14:16.
s-alpha geometry updated
39c6491679da
·Ahoffmann on Aug 3 2021, 14:16.
shear and inverse aspect ratio
30353427ff31
·Ahoffmann on Aug 3 2021, 14:16.
z-dep kernel and mirror force terms
cec66ce8cfc7
·Ahoffmann on Aug 3 2021, 14:15.
Kernel are now z-dependant
358d36843be4
·Ahoffmann on Aug 3 2021, 14:15.

Aug 2 2021

module to precompute kernels, lin coeff etc.
8f7a499b4d51
·Ahoffmann on Aug 2 2021, 15:51.
Flux tube geometry routines inspired from molix (BJF)
c560631e205d
·Ahoffmann on Aug 2 2021, 15:51.
Origin contains now HeLaZ 3D version (2D is saved in a branch)
44995a79168c
·Ahoffmann on Aug 2 2021, 10:06.

Jul 28 2021

kernel truncation has been corrected
062c21db7967
·Ahoffmann on Jul 28 2021, 13:46.
module for 3D
adb9a6f439b4
·Ahoffmann on Jul 28 2021, 13:46.

Jul 27 2021

clean up
eb0604e621b0
·Ahoffmann on Jul 27 2021, 14:48.
undo last change
72cb6f4e424e
·Ahoffmann on Jul 27 2021, 10:13.
Correction of Tcoll init
ba05f7e1415d
·Ahoffmann on Jul 27 2021, 10:12.

Jul 6 2021

minor changes
2c540bd4efc9
·Ahoffmann on Jul 6 2021, 10:38.
restarting with different PJ is now possible
c8f3250a693e
·Ahoffmann on Jul 6 2021, 10:38.
one can init the sim with a sin profile + invert the sign of linear eq.
b4daac7cdca1
·Ahoffmann on Jul 6 2021, 10:38.
GK pitch angle is now on CO=3
186aab80ba93
·Ahoffmann on Jul 6 2021, 10:37.

Jun 24 2021

reduce the terminal output at the end
37b681082b96
·Ahoffmann on Jun 24 2021, 11:19.

Jun 23 2021

Added hd coeff in the params writing
6ebbf1115af0
·Ahoffmann on Jun 23 2021, 09:27.
rm unused code
b2d0cb4aa036
·Ahoffmann on Jun 23 2021, 09:26.

Jun 15 2021

correction of non adiabatic moments in temp and dens diagnostics
18fb426ed7ed
·Ahoffmann on Jun 15 2021, 15:33.
displacement of manual bcast to utility module
ebbc7e298224
·Ahoffmann on Jun 15 2021, 14:11.
temperature and density arrays for diagnostics
2325410409f0
·Ahoffmann on Jun 15 2021, 14:06.
check if the parallel. along p is suitable for DGGK
6613afcd40ea
·Ahoffmann on Jun 15 2021, 14:06.
manual bcast is a routine now
a6abe960c227
·Ahoffmann on Jun 15 2021, 14:06.
routine for manual bcast
299d61ad527b
·Ahoffmann on Jun 15 2021, 14:05.
Added density and temperature diagnostics
9ef07a7a803b
·Ahoffmann on Jun 15 2021, 14:05.

Jun 9 2021

correction of DGGK and tentative to unify DGGK_e and DGGK_i routines
3fe3d63c9906
·Ahoffmann on Jun 9 2021, 14:24.

Jun 7 2021

update 2.7: collision improvement and corrections
96dc3536888d
·Ahoffmann on Jun 7 2021, 14:39.

May 27 2021

Risk of wrong adress when DK CO is used
aa80c0e9d028
·Ahoffmann on May 27 2021, 16:45.
reduce the amount of terminal output
aaceb561ed4f
·Ahoffmann on May 27 2021, 16:32.
Use of one merged cosolver file instead of multiple kperp files
d9e757c043c1
·Ahoffmann on May 27 2021, 16:20.
typo
bbe52dceba00
·Ahoffmann on May 27 2021, 11:54.
trying to solve daint compilation..
fc19b36cd2a8
·Ahoffmann on May 27 2021, 11:45.
remove unused routines
a6d8467e3313
·Ahoffmann on May 27 2021, 11:44.

May 26 2021

Correction of the e-e collision frequency in dougherty
4ad67ff778fa
·Ahoffmann on May 26 2021, 13:54.

May 20 2021

The normalization is now based on ion ion collision.
cc10bca209dc
·Ahoffmann on May 20 2021, 10:42.

May 19 2021

Correction of the cosolver collisionality normalization
8caeb5f11bd9
·Ahoffmann on May 19 2021, 18:29.

May 18 2021

Added option to intialize a sin profile as initial state
657e60ec8a69
·Ahoffmann on May 18 2021, 17:23.

May 17 2021

typo
3d636b95fda5
·Ahoffmann on May 17 2021, 16:12.
Added ZF initialization option
59fa66532c42
·Ahoffmann on May 17 2021, 16:08.
renamed inital background and noise variables
4a6a43b6c612
·Ahoffmann on May 17 2021, 15:55.
Source flag to remove ei ie collision terms
1a41c14b0cd5
·Ahoffmann on May 17 2021, 15:53.

May 4 2021

Typo
20f2ab777d1e
·Ahoffmann on May 4 2021, 08:39.

Apr 23 2021

simplification of the code
46c819e0cb3d
·Ahoffmann on Apr 23 2021, 13:52.
COSOlver matrices are asked up to 2/3 kperpmax (since AA on larger k)
607caa60fa17
·Ahoffmann on Apr 23 2021, 13:52.
diagnostic to have a cp at tf if no crash
e7b01d2ad565
·Ahoffmann on Apr 23 2021, 09:46.

Apr 20 2021

typo correction
0d368ce61695
·Ahoffmann on Apr 20 2021, 10:48.
variable flag COMPUTE_ONLY_EVEN_P renamed
3a8d34ffde9d
·Ahoffmann on Apr 20 2021, 10:46.
typo
6474c3489b77
·Ahoffmann on Apr 20 2021, 10:46.
changed the writing in advancing the moments
ccc455f2aed9
·Ahoffmann on Apr 20 2021, 10:22.
terminal info to know restart time
22e728b541f5
·Ahoffmann on Apr 20 2021, 10:21.
removing other closure methods, only truncation is available
72eb238244b3
·Ahoffmann on Apr 20 2021, 10:20.
implicit, lighter writing of loops
7398d80ef1f5
·Ahoffmann on Apr 20 2021, 10:19.

Apr 19 2021

typo in Pi,Ji parameters writing
d047f3366b4b
·Ahoffmann on Apr 19 2021, 16:55.

Apr 15 2021

removed debug outputs
dcf46dd9e179
·Ahoffmann on Apr 15 2021, 14:50.
Avoid calling MPI comm routines if only one proc in p
c9f1103728f4
·Ahoffmann on Apr 15 2021, 11:48.

Apr 14 2021

Added a flag to know if the process has kr=0 data or not
2837b818d3ff
·Ahoffmann on Apr 14 2021, 11:46.

Apr 13 2021

removed world_rank and world_size variables
65812b944391
·Ahoffmann on Apr 13 2021, 17:50.
typo
8014eafcf31d
·Ahoffmann on Apr 13 2021, 17:50.
Update intrinsic comput. time profiler
0d926a200cfc
·Ahoffmann on Apr 13 2021, 16:13.
cleaning
956e78c3dab9
·Ahoffmann on Apr 13 2021, 15:33.
comments and correction of Sapj computed before dnjs
e5be3acc0e29
·Ahoffmann on Apr 13 2021, 15:33.
Changed the order in do to have all fields updated at end of step
402b540ead7e
·Ahoffmann on Apr 13 2021, 15:32.
SUgama operator implementation
ec6703038b27
·Ahoffmann on Apr 13 2021, 08:59.

Apr 12 2021

naming change of comm_r to comm_kr
c7fa939998c0
·Ahoffmann on Apr 12 2021, 11:22.
naming change of comm_r to comm_kr
9573a9db3bde
·Ahoffmann on Apr 12 2021, 11:21.

Apr 1 2021

renaming of variables
3703264f4929
·Ahoffmann on Apr 1 2021, 13:31.
GK Cosolver update and collision routines
54c0213dedbc
·Ahoffmann on Apr 1 2021, 13:29.
New parameter to control the non linear sum truncations
a5eb6ee58d19
·Ahoffmann on Apr 1 2021, 13:25.

Mar 18 2021

Adding processing directly in the code in order to reduce output
fb5e50f8993c
·Ahoffmann on Mar 18 2021, 08:45.

Mar 16 2021

no 5D output at t=0
103674a8b230
·Ahoffmann on Mar 16 2021, 15:32.
organized better time measurement
3bc306413732
·Ahoffmann on Mar 16 2021, 11:51.
removed Sapj output
d37a83fd8569
·Ahoffmann on Mar 16 2021, 11:51.
add num proc p and kr in hdf5
6015df684365
·Ahoffmann on Mar 16 2021, 10:43.

Mar 15 2021

Change the output organization, grid is now written once
fd805cf83a36
·Ahoffmann on Mar 15 2021, 16:38.
Put all the advance fields in a routine for clarity in the time loop
71102757537b
·Ahoffmann on Mar 15 2021, 16:26.
restart functions to load a state from an older sim
2fdcd01a63eb
·Ahoffmann on Mar 15 2021, 16:25.
typo in the sign
6e62367cb401
·Ahoffmann on Mar 15 2021, 16:23.
Allocation of Na00 arrays for diagnostics in 2D parallel
56e0b1bf214f
·Ahoffmann on Mar 15 2021, 16:23.
Replaced only Na00 start option with phi start option
5ebc1b03d646
·Ahoffmann on Mar 15 2021, 16:23.
Initialization on phi only is now possible, restart functions are moved
39cf2ca15e7e
·Ahoffmann on Mar 15 2021, 16:22.
2D parallel distribution
b6c9fd757683
·Ahoffmann on Mar 15 2021, 16:21.
Update ghosts cells exchange for parallel 2D
f85f7606acc0
·Ahoffmann on Mar 15 2021, 16:21.
Change of communication mean for 2D parallel
639ccdd11e81
·Ahoffmann on Mar 15 2021, 16:21.
Adapted for 2D data distribution on p and kr
4d49927500de
·Ahoffmann on Mar 15 2021, 16:20.
comment
62d467fd7b40
·Ahoffmann on Mar 15 2021, 16:20.
Option to skip p=odd computation since odds are 0. + typo
629a0a276e4a
·Ahoffmann on Mar 15 2021, 16:19.
Corrections of Dougherty operator
5ed2781da4fe
·Ahoffmann on Mar 15 2021, 16:19.
Broadcast from rank_p 0 to all other p processes for phi computation
690e56402ef4
·Ahoffmann on Mar 15 2021, 16:12.
Adaptation for 2D parallel runs with mpi along p and kr
2799bb019144
·Ahoffmann on Mar 15 2021, 16:12.
added output of the parallel setup in terminal
bd7c9676eebc
·Ahoffmann on Mar 15 2021, 16:11.
New field to write 00 moments in parallel through gathering
ccd109dfc729
·Ahoffmann on Mar 15 2021, 16:11.
Imaginary unit was not written in double precision
dc0bae856e8b
·Ahoffmann on Mar 15 2021, 16:07.

gyacomo/src3D_parallela58f14c587be4a93c548971…

Aug 4 2021

Aug 3 2021

Aug 2 2021

Jul 28 2021

Jul 27 2021

Jul 6 2021

Jun 24 2021

Jun 23 2021

Jun 15 2021

Jun 9 2021

Jun 7 2021

May 27 2021

May 26 2021

May 20 2021

May 19 2021

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May 4 2021

Apr 23 2021

Apr 20 2021

Apr 19 2021

Apr 15 2021

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Apr 12 2021

Apr 1 2021

Mar 18 2021

Mar 16 2021

Mar 15 2021

gyacomo/src
3D_parallela58f14c587be4a93c548971…