Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (gather_output) History

History
gather_output59fa66532c426ae9d50c98f…

Mar 1 2021

Particle flux is now computed from fourier coefficient directly
5a93fd3816a4
·Ahoffmann on Mar 1 2021, 10:58.
New scripts for Marconi and Piz Daint HPC
0e7f77639707
·Ahoffmann on Mar 1 2021, 10:57.

Feb 23 2021

implemented a new method to compute radial particle flux
8458c0bf5c75
·Ahoffmann on Feb 23 2021, 16:53.
Merge branch 'master' of ssh://c4science.ch/source/HeLaZ
44c272cce95d
·Ahoffmann on Feb 23 2021, 09:10.
adapt ppb110 script
79defc3dbd4e
·Ahoffmann on Feb 23 2021, 09:10.
bug fixed in restarting sim
4aa43bbb59a6
·Ahoffmann on Feb 23 2021, 09:01.

Feb 22 2021

typos
876faca03ef6
·Ahoffmann on Feb 22 2021, 18:13.
module specification for PPB110
65f1393b7560
·Ahoffmann on Feb 22 2021, 14:31.
typo
8be81b270ec4
·Ahoffmann on Feb 22 2021, 13:49.
typos
4de76beba6c1
·Ahoffmann on Feb 22 2021, 13:43.
adapting for ppb110
f85ae2db7c6e
·Ahoffmann on Feb 22 2021, 13:41.
adapting for PPB110
8b22437bf1f4
·Ahoffmann on Feb 22 2021, 13:40.
test case
9fc570b68aa3
·Ahoffmann on Feb 22 2021, 12:04.
Wrote a script to run job on PPB110 slurm manager
ea258e69bcd8
·Ahoffmann on Feb 22 2021, 11:59.
information about make install
5b7ea906d4b2
·Ahoffmann on Feb 22 2021, 11:26.
added an install option to make so it moves the .mod files
4cd4e6e23659
·Ahoffmann on Feb 22 2021, 11:25.
small updates
fc74042bcbb2
·Ahoffmann on Feb 22 2021, 11:23.
Kinetic hyperdiffusion is added
018142a60b27
·Ahoffmann on Feb 22 2021, 11:11.
comments
991ed5bb1c22
·Ahoffmann on Feb 22 2021, 11:11.
scripts update
03a6473f44ea
·Ahoffmann on Feb 22 2021, 11:11.
small changes
618dadfd90dd
·Ahoffmann on Feb 22 2021, 11:11.
Added instructions for installing the program
8dc53a177577
·Ahoffmann on Feb 22 2021, 11:10.
added librairies requirements
aa3584de0332
·Ahoffmann on Feb 22 2021, 09:10.

Feb 19 2021

removed unused p_damped j_damped
ccdc151349ba
·Ahoffmann on Feb 19 2021, 15:17.
removed unused p_damped j_damped
5e7f506d8d49
·Ahoffmann on Feb 19 2021, 15:13.
started kinetic hyperdiffusivity
d9db1695730e
·Ahoffmann on Feb 19 2021, 11:26.
Bug solved on ghost PJ values
298107696b56
·Ahoffmann on Feb 19 2021, 11:25.
update for closure and collision mods
8b8da7d134aa
·Ahoffmann on Feb 19 2021, 11:24.
minor changes
637b4a794827
·Ahoffmann on Feb 19 2021, 11:24.
added parameters for kinetic hyperdiffusion
ee6a8760a3ef
·Ahoffmann on Feb 19 2021, 11:24.
Checkpoint loading are done on output file now, bug in write 5D corrected
784baff12d6d
·Ahoffmann on Feb 19 2021, 11:23.
minor changes
8e16d3b4f32c
·Ahoffmann on Feb 19 2021, 11:22.
added copy closure and started semi collisional closure
3deffddb4b8a
·Ahoffmann on Feb 19 2021, 11:22.
scripts update
2a5f329a8148
·Ahoffmann on Feb 19 2021, 11:20.

Feb 12 2021

typo
8b0e1eed463e
·Ahoffmann on Feb 12 2021, 16:00.
correction on Napj diagnostic
20f0096c6b30
·Ahoffmann on Feb 12 2021, 09:21.

Feb 1 2021

typo on crashed variable
c01895f0ca25
·Ahoffmann on Feb 1 2021, 12:51.
cp at end of sim only if not crashed simulation
de2eb44013a7
·Ahoffmann on Feb 1 2021, 12:12.
Added simulation end checkpoint
e06013d45143
·Ahoffmann on Feb 1 2021, 10:12.

Jan 15 2021

closure and kernel model flags
1ac9de43ef0f
·Ahoffmann on Jan 15 2021, 14:34.
moments boundaries are extended for closure
b82803a09f19
·Ahoffmann on Jan 15 2021, 14:34.
Kernel and closure are put away from rhs
4521ba30593d
·Ahoffmann on Jan 15 2021, 14:33.
One can continue simulation with different PJ now
ca643c9bac92
·Ahoffmann on Jan 15 2021, 14:33.
closure mod adaptation
5437ed07bcaa
·Ahoffmann on Jan 15 2021, 14:33.
module for different closure model
977cd88ed3b8
·Ahoffmann on Jan 15 2021, 14:32.
update scripts
9c460ecf6b6e
·Ahoffmann on Jan 15 2021, 14:32.

Jan 13 2021

Put DK Full Coulomb CO in collision mode as a routine
bf9d0b0f34e4
·Ahoffmann on Jan 13 2021, 11:23.
Cleaning and ordering wk and matlab directories
969a1081e04c
·Ahoffmann on Jan 13 2021, 10:18.

Jan 12 2021

comments
8fe6558f23e1
·Ahoffmann on Jan 12 2021, 15:48.
cleaning
5a9a047c007b
·Ahoffmann on Jan 12 2021, 15:48.
Split moment_eq_rhs in two routines (i,e)
5a4c7c3cef78
·Ahoffmann on Jan 12 2021, 15:48.
GK dougherty is added
bb9d57674ec6
·Ahoffmann on Jan 12 2021, 15:47.
update matlab scripts
d1b82f9414b6
·Ahoffmann on Jan 12 2021, 15:47.
moved precomputed factors from stepon routines to model
17aae9e64a04
·Ahoffmann on Jan 12 2021, 11:51.
Start writing collision operator in a separated module
9bea36bdb7f8
·Ahoffmann on Jan 12 2021, 11:50.

Jan 11 2021

more output for initialization
2293a9c3b745
·Ahoffmann on Jan 11 2021, 17:18.
Use precomputed Kernel and closed truncation at Jmax
93124e150641
·Ahoffmann on Jan 11 2021, 17:07.
Kernel precomputation
5048603059f1
·Ahoffmann on Jan 11 2021, 17:05.
minor changes
7d0311467057
·Ahoffmann on Jan 11 2021, 17:05.
Debugging 1D linear
5c727b907e8a
·Ahoffmann on Jan 11 2021, 10:33.
AA modification in Convolution_2D (unused)
c3598dd51b12
·Ahoffmann on Jan 11 2021, 10:33.
One big FC file is now sufficient to load FC mat
40f1c5fdc83e
·Ahoffmann on Jan 11 2021, 10:32.
Debugging 1D linear simulations
e0c629f83f22
·Ahoffmann on Jan 11 2021, 10:31.
Scripts updates
a2d76ab7d25a
·Ahoffmann on Jan 11 2021, 10:30.
Renaming the script for testing new features
21c41677481e
·Ahoffmann on Jan 11 2021, 09:27.

Jan 8 2021

anticipated kernel evaluation
9db4099151a2
·Ahoffmann on Jan 8 2021, 17:46.
delete redundancy
fd6474e8eeeb
·Ahoffmann on Jan 8 2021, 17:44.
AA changed and collision organisation
6a35ad177752
·Ahoffmann on Jan 8 2021, 17:41.
unused
89bbd38a7116
·Ahoffmann on Jan 8 2021, 15:18.
debug linear 1D run
4136d4f51527
·Ahoffmann on Jan 8 2021, 14:36.

Jan 5 2021

gif label correction
bdb19df49367
·Ahoffmann on Jan 5 2021, 14:10.
interface change
ccf2889f88bd
·Ahoffmann on Jan 5 2021, 13:36.
slight output change
d13bdf7310d1
·Ahoffmann on Jan 5 2021, 13:36.
Prevent bad ikzs ikze allocation for last process id
cca109703c19
·Ahoffmann on Jan 5 2021, 13:36.

Jan 4 2021

Use a MPI_ALLREDUCE for exit condition
9057de439c4a
·Ahoffmann on Jan 4 2021, 17:19.
comments
65c26e60a5ec
·Ahoffmann on Jan 4 2021, 17:19.
clean up
17244ee7e9a9
·Ahoffmann on Jan 4 2021, 13:56.

Dec 18 2020

move matlab auxiliary script
492966862e31
·Ahoffmann on Dec 18 2020, 15:02.

Dec 17 2020

update finish conditions
92ffdefc40b2
·Ahoffmann on Dec 17 2020, 15:45.
improve finish conditions for MPI
8330ee6bacdb
·Ahoffmann on Dec 17 2020, 15:07.

Dec 15 2020

saving data is disabled by negative nsave now
355bb4bf67dc
·Ahoffmann on Dec 15 2020, 18:00.
remove write_field flags
accf2cc1dcaa
·Ahoffmann on Dec 15 2020, 17:42.
Merge branch 'master' of ssh://c4science.ch/source/HeLaZ
5b18627b1653
·Ahoffmann on Dec 15 2020, 17:40.
Update on diagnostics : if nsave_nd = 0, no initial diagnostic anymore
78e603d998d7
·Ahoffmann on Dec 15 2020, 17:40.
Update on diagnostics : if nsave_nd = 0, no initial diagnostic anymore
8e5b01688b3b
·Ahoffmann on Dec 15 2020, 17:39.
to retrieve phase space distribution function
4a65992df0a0
·Ahoffmann on Dec 15 2020, 17:35.
Exit 10% earlier than the CPU time asked to ensure final diagnostics
a60ba8910732
·Ahoffmann on Dec 15 2020, 14:48.
update roadmap
28963d05d1d3
·Ahoffmann on Dec 15 2020, 14:29.
removed unused variables KR0KH A0KH and CANCEL_ODD_P
41717707cd69
·Ahoffmann on Dec 15 2020, 14:26.
scripts minor updates
dd16468815ab
·Ahoffmann on Dec 15 2020, 14:25.
Add a intern wallclock runtime end condition to avoid enforced slurm end
8236765d977c
·Ahoffmann on Dec 15 2020, 14:25.

Dec 14 2020

automatic reading of execution time per Nproc
8dd2f3189f27
·Ahoffmann on Dec 14 2020, 11:29.
display run time in second as well at the end
94c8c998dd6c
·Ahoffmann on Dec 14 2020, 11:28.
write the number of process in output file
e7303f1d020e
·Ahoffmann on Dec 14 2020, 09:33.
update results
a8e24f8ee529
·Ahoffmann on Dec 14 2020, 09:03.
Added checkpoint saving rate as input parameter
84c2069410ca
·Ahoffmann on Dec 14 2020, 09:03.

Dec 10 2020

Change file management, the code is run directly from the results folder
2ae84092f813
·Ahoffmann on Dec 10 2020, 17:13.
Resolved a bug on checkpoint saves and reload
d557efa46891
·Ahoffmann on Dec 10 2020, 17:12.

Dec 9 2020

resolving shock when restart
6312425216de
·Ahoffmann on Dec 9 2020, 12:05.

Dec 8 2020

scripts updates
a198a66dc93b
·Ahoffmann on Dec 8 2020, 17:08.

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History
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