Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (master) History

History
masterfb5e50f8993ce0a07b6f5ca…

Mar 18 2021

Adding processing directly in the code in order to reduce output
fb5e50f8993c
·Ahoffmann on Mar 18 2021, 08:45.

Mar 16 2021

no 5D output at t=0
103674a8b230
·Ahoffmann on Mar 16 2021, 15:32.
organized better time measurement
3bc306413732
·Ahoffmann on Mar 16 2021, 11:51.
removed Sapj output
d37a83fd8569
·Ahoffmann on Mar 16 2021, 11:51.
removed Sapj output analysis
afc1673539d1
·Ahoffmann on Mar 16 2021, 11:51.
add num proc p and kr in hdf5
6015df684365
·Ahoffmann on Mar 16 2021, 10:43.
update scripts
176447b078b3
·Ahoffmann on Mar 16 2021, 10:06.

Mar 15 2021

typo
edcfcb45adc6
·Ahoffmann on Mar 15 2021, 17:31.
gray is nicer
107bbcf3c015
·Ahoffmann on Mar 15 2021, 17:31.
Change the output organization, grid is now written once
fd805cf83a36
·Ahoffmann on Mar 15 2021, 16:38.
Update 2.4
854249224fcd
·Ahoffmann on Mar 15 2021, 16:28.
Put all the advance fields in a routine for clarity in the time loop
71102757537b
·Ahoffmann on Mar 15 2021, 16:26.
scripts update
6ec191e58be1
·Ahoffmann on Mar 15 2021, 16:25.
restart functions to load a state from an older sim
2fdcd01a63eb
·Ahoffmann on Mar 15 2021, 16:25.
typo in the sign
6e62367cb401
·Ahoffmann on Mar 15 2021, 16:23.
Allocation of Na00 arrays for diagnostics in 2D parallel
56e0b1bf214f
·Ahoffmann on Mar 15 2021, 16:23.
Replaced only Na00 start option with phi start option
5ebc1b03d646
·Ahoffmann on Mar 15 2021, 16:23.
Initialization on phi only is now possible, restart functions are moved
39cf2ca15e7e
·Ahoffmann on Mar 15 2021, 16:22.
2D parallel distribution
b6c9fd757683
·Ahoffmann on Mar 15 2021, 16:21.
Update ghosts cells exchange for parallel 2D
f85f7606acc0
·Ahoffmann on Mar 15 2021, 16:21.
Change of communication mean for 2D parallel
639ccdd11e81
·Ahoffmann on Mar 15 2021, 16:21.
Adapted for 2D data distribution on p and kr
4d49927500de
·Ahoffmann on Mar 15 2021, 16:20.
comment
62d467fd7b40
·Ahoffmann on Mar 15 2021, 16:20.
Option to skip p=odd computation since odds are 0. + typo
629a0a276e4a
·Ahoffmann on Mar 15 2021, 16:19.
Corrections of Dougherty operator
5ed2781da4fe
·Ahoffmann on Mar 15 2021, 16:19.
Broadcast from rank_p 0 to all other p processes for phi computation
690e56402ef4
·Ahoffmann on Mar 15 2021, 16:12.
Adaptation for 2D parallel runs with mpi along p and kr
2799bb019144
·Ahoffmann on Mar 15 2021, 16:12.
added output of the parallel setup in terminal
bd7c9676eebc
·Ahoffmann on Mar 15 2021, 16:11.
New field to write 00 moments in parallel through gathering
ccd109dfc729
·Ahoffmann on Mar 15 2021, 16:11.
Added an option to start with only noise in phi for smoother starts
dd62fee629cf
·Ahoffmann on Mar 15 2021, 16:10.
Timer for communications
18dbca68d0c9
·Ahoffmann on Mar 15 2021, 16:09.
added closure in parameters to load
d01976674558
·Ahoffmann on Mar 15 2021, 16:08.
adding the new modules for ghosts and restarts
131ce7214fd8
·Ahoffmann on Mar 15 2021, 16:08.
Imaginary unit was not written in double precision
dc0bae856e8b
·Ahoffmann on Mar 15 2021, 16:07.

Mar 3 2021

post processing fixing
031ca67ff941
·Ahoffmann on Mar 3 2021, 11:24.
update scripts
5caf879b882a
·Ahoffmann on Mar 3 2021, 11:24.
start of parallel along p
503fa0fa9f96
·Ahoffmann on Mar 3 2021, 11:23.

Mar 1 2021

Particle flux is now computed from fourier coefficient directly
5a93fd3816a4
·Ahoffmann on Mar 1 2021, 10:58.
New scripts for Marconi and Piz Daint HPC
0e7f77639707
·Ahoffmann on Mar 1 2021, 10:57.

Feb 23 2021

implemented a new method to compute radial particle flux
8458c0bf5c75
·Ahoffmann on Feb 23 2021, 16:53.
Merge branch 'master' of ssh://c4science.ch/source/HeLaZ
44c272cce95d
·Ahoffmann on Feb 23 2021, 09:10.
adapt ppb110 script
79defc3dbd4e
·Ahoffmann on Feb 23 2021, 09:10.
bug fixed in restarting sim
4aa43bbb59a6
·Ahoffmann on Feb 23 2021, 09:01.

Feb 22 2021

typos
876faca03ef6
·Ahoffmann on Feb 22 2021, 18:13.
module specification for PPB110
65f1393b7560
·Ahoffmann on Feb 22 2021, 14:31.
typo
8be81b270ec4
·Ahoffmann on Feb 22 2021, 13:49.
typos
4de76beba6c1
·Ahoffmann on Feb 22 2021, 13:43.
adapting for ppb110
f85ae2db7c6e
·Ahoffmann on Feb 22 2021, 13:41.
adapting for PPB110
8b22437bf1f4
·Ahoffmann on Feb 22 2021, 13:40.
test case
9fc570b68aa3
·Ahoffmann on Feb 22 2021, 12:04.
Wrote a script to run job on PPB110 slurm manager
ea258e69bcd8
·Ahoffmann on Feb 22 2021, 11:59.
information about make install
5b7ea906d4b2
·Ahoffmann on Feb 22 2021, 11:26.
added an install option to make so it moves the .mod files
4cd4e6e23659
·Ahoffmann on Feb 22 2021, 11:25.
small updates
fc74042bcbb2
·Ahoffmann on Feb 22 2021, 11:23.
Kinetic hyperdiffusion is added
018142a60b27
·Ahoffmann on Feb 22 2021, 11:11.
comments
991ed5bb1c22
·Ahoffmann on Feb 22 2021, 11:11.
scripts update
03a6473f44ea
·Ahoffmann on Feb 22 2021, 11:11.
small changes
618dadfd90dd
·Ahoffmann on Feb 22 2021, 11:11.
Added instructions for installing the program
8dc53a177577
·Ahoffmann on Feb 22 2021, 11:10.
added librairies requirements
aa3584de0332
·Ahoffmann on Feb 22 2021, 09:10.

Feb 19 2021

removed unused p_damped j_damped
ccdc151349ba
·Ahoffmann on Feb 19 2021, 15:17.
removed unused p_damped j_damped
5e7f506d8d49
·Ahoffmann on Feb 19 2021, 15:13.
started kinetic hyperdiffusivity
d9db1695730e
·Ahoffmann on Feb 19 2021, 11:26.
Bug solved on ghost PJ values
298107696b56
·Ahoffmann on Feb 19 2021, 11:25.
update for closure and collision mods
8b8da7d134aa
·Ahoffmann on Feb 19 2021, 11:24.
minor changes
637b4a794827
·Ahoffmann on Feb 19 2021, 11:24.
added parameters for kinetic hyperdiffusion
ee6a8760a3ef
·Ahoffmann on Feb 19 2021, 11:24.
Checkpoint loading are done on output file now, bug in write 5D corrected
784baff12d6d
·Ahoffmann on Feb 19 2021, 11:23.
minor changes
8e16d3b4f32c
·Ahoffmann on Feb 19 2021, 11:22.
added copy closure and started semi collisional closure
3deffddb4b8a
·Ahoffmann on Feb 19 2021, 11:22.
scripts update
2a5f329a8148
·Ahoffmann on Feb 19 2021, 11:20.

Feb 12 2021

typo
8b0e1eed463e
·Ahoffmann on Feb 12 2021, 16:00.
correction on Napj diagnostic
20f0096c6b30
·Ahoffmann on Feb 12 2021, 09:21.

Feb 1 2021

typo on crashed variable
c01895f0ca25
·Ahoffmann on Feb 1 2021, 12:51.
cp at end of sim only if not crashed simulation
de2eb44013a7
·Ahoffmann on Feb 1 2021, 12:12.
Added simulation end checkpoint
e06013d45143
·Ahoffmann on Feb 1 2021, 10:12.

Jan 15 2021

closure and kernel model flags
1ac9de43ef0f
·Ahoffmann on Jan 15 2021, 14:34.
moments boundaries are extended for closure
b82803a09f19
·Ahoffmann on Jan 15 2021, 14:34.
Kernel and closure are put away from rhs
4521ba30593d
·Ahoffmann on Jan 15 2021, 14:33.
One can continue simulation with different PJ now
ca643c9bac92
·Ahoffmann on Jan 15 2021, 14:33.
closure mod adaptation
5437ed07bcaa
·Ahoffmann on Jan 15 2021, 14:33.
module for different closure model
977cd88ed3b8
·Ahoffmann on Jan 15 2021, 14:32.
update scripts
9c460ecf6b6e
·Ahoffmann on Jan 15 2021, 14:32.

Jan 13 2021

Put DK Full Coulomb CO in collision mode as a routine
bf9d0b0f34e4
·Ahoffmann on Jan 13 2021, 11:23.
Cleaning and ordering wk and matlab directories
969a1081e04c
·Ahoffmann on Jan 13 2021, 10:18.

Jan 12 2021

comments
8fe6558f23e1
·Ahoffmann on Jan 12 2021, 15:48.
cleaning
5a9a047c007b
·Ahoffmann on Jan 12 2021, 15:48.
Split moment_eq_rhs in two routines (i,e)
5a4c7c3cef78
·Ahoffmann on Jan 12 2021, 15:48.
GK dougherty is added
bb9d57674ec6
·Ahoffmann on Jan 12 2021, 15:47.
update matlab scripts
d1b82f9414b6
·Ahoffmann on Jan 12 2021, 15:47.
moved precomputed factors from stepon routines to model
17aae9e64a04
·Ahoffmann on Jan 12 2021, 11:51.
Start writing collision operator in a separated module
9bea36bdb7f8
·Ahoffmann on Jan 12 2021, 11:50.

Jan 11 2021

more output for initialization
2293a9c3b745
·Ahoffmann on Jan 11 2021, 17:18.
Use precomputed Kernel and closed truncation at Jmax
93124e150641
·Ahoffmann on Jan 11 2021, 17:07.
Kernel precomputation
5048603059f1
·Ahoffmann on Jan 11 2021, 17:05.
minor changes
7d0311467057
·Ahoffmann on Jan 11 2021, 17:05.
Debugging 1D linear
5c727b907e8a
·Ahoffmann on Jan 11 2021, 10:33.
AA modification in Convolution_2D (unused)
c3598dd51b12
·Ahoffmann on Jan 11 2021, 10:33.
One big FC file is now sufficient to load FC mat
40f1c5fdc83e
·Ahoffmann on Jan 11 2021, 10:32.
Debugging 1D linear simulations
e0c629f83f22
·Ahoffmann on Jan 11 2021, 10:31.

Historymasterfb5e50f8993ce0a07b6f5ca…

Mar 18 2021

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Mar 15 2021

Mar 3 2021

Mar 1 2021

Feb 23 2021

Feb 22 2021

Feb 19 2021

Feb 12 2021

Feb 1 2021

Jan 15 2021

Jan 13 2021

Jan 12 2021

Jan 11 2021

History
masterfb5e50f8993ce0a07b6f5ca…