Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (master) History

gyacomo/matlab
master286b37a44f5e4ac56e3a33b…

Oct 27 2021

Update scripts
286b37a44f5e
·Ahoffmann on Oct 27 2021, 15:29.

Oct 22 2021

Update scripts
59f9a2dc5254
·Ahoffmann on Oct 22 2021, 14:38.

Oct 8 2021

Scripts now read heat fluxes and name input file as fort_XX.90
b8fae4bb2b6a
·Ahoffmann on Oct 8 2021, 14:05.

Oct 4 2021

scripts and typos
d118c2b79c10
·Ahoffmann on Oct 4 2021, 15:47.
scripts update
6fa34bf7805f
·Ahoffmann on Oct 4 2021, 09:36.

Sep 13 2021

scripts updates
01dcbfc35ab5
·Ahoffmann on Sep 13 2021, 11:21.

Sep 9 2021

post processing scripts update
8787f7eab857
·Ahoffmann on Sep 9 2021, 15:20.

Aug 30 2021

scripts update
6ada1c908c4f
·Ahoffmann on Aug 30 2021, 15:52.
to plot the evolution of parameters during a run
8708f060e3b1
·Ahoffmann on Aug 30 2021, 15:52.

Aug 4 2021

FCGK is available now
207d8e18ddbe
·Ahoffmann on Aug 4 2021, 14:02.
scripts update
ab81f3e047fa
·Ahoffmann on Aug 4 2021, 09:54.

Aug 3 2021

typo
10eb8738cfd3
·Ahoffmann on Aug 3 2021, 16:28.
added shear and inverse aspect ratio as input parameters
27afc84e7653
·Ahoffmann on Aug 3 2021, 14:26.
change simdir name
fba92bd9b4a0
·Ahoffmann on Aug 3 2021, 14:13.

Aug 2 2021

Reorganization of the matlab scripts for more readability
7be2bab52db0
·Ahoffmann on Aug 2 2021, 10:34.
Cleaning
cdab05a12658
·Ahoffmann on Aug 2 2021, 10:18.

Jul 28 2021

scripts
7fbf0cbf3e4d
·Ahoffmann on Jul 28 2021, 14:05.

Jul 27 2021

SGGK mat filename corrected
9b7ab14145b8
·Ahoffmann on Jul 27 2021, 10:54.

Jul 13 2021

upload scripts
5452b3b941c0
·Ahoffmann on Jul 13 2021, 18:06.

Jul 6 2021

matlab scripts update
089bc1ca8e5b
·Ahoffmann on Jul 6 2021, 10:39.

Jun 15 2021

scripts updates
bb7b5ed9b9f1
·Ahoffmann on Jun 15 2021, 14:06.

Jun 7 2021

scripts update
b0ff0dd6eb0e
·Ahoffmann on Jun 7 2021, 14:40.

Jun 1 2021

Matlab scripts update
efef5834de83
·Ahoffmann on Jun 1 2021, 09:50.

May 20 2021

The normalization is now based on ion ion collision.
cc10bca209dc
·Ahoffmann on May 20 2021, 10:42.

May 17 2021

Added ZF initialization option
59fa66532c42
·Ahoffmann on May 17 2021, 16:08.
renamed inital background and noise variables
4a6a43b6c612
·Ahoffmann on May 17 2021, 15:55.
update matlab setup and postprocessing scripts
e1aafe9a98d8
·Ahoffmann on May 17 2021, 15:40.

Apr 20 2021

scripts update
6e9d3d51b66c
·Ahoffmann on Apr 20 2021, 10:22.

Apr 13 2021

Update intrinsic comput. time profiler
0d926a200cfc
·Ahoffmann on Apr 13 2021, 16:13.

Apr 12 2021

scripts update
7b770777f0a7
·Ahoffmann on Apr 12 2021, 11:20.
New scripts to run on Izar cluster
e12f52de11eb
·Ahoffmann on Apr 12 2021, 11:20.

Apr 6 2021

Scripts update
b51bfde66224
·Ahoffmann on Apr 6 2021, 09:03.

Apr 1 2021

New parameter to control the non linear sum truncations
a5eb6ee58d19
·Ahoffmann on Apr 1 2021, 13:25.

Mar 31 2021

update for COSOlver matrices in DK and GK approach + nmax of nonlin sum
58aaf1ad253e
·Ahoffmann on Mar 31 2021, 16:30.
change of value for flag CO
c8ddcc8b70e7
·Ahoffmann on Mar 31 2021, 16:29.
adapted for 0D output
0b542b7d557b
·Ahoffmann on Mar 31 2021, 16:28.
small correction
938602b2105e
·Ahoffmann on Mar 31 2021, 16:28.
Scripts to generate collision matrix using COSOlver given a grid
5b04f7e612ed
·Ahoffmann on Mar 31 2021, 16:28.

Mar 18 2021

Add the PREFIX and SUFFIX options to add some naming
a143890d3612
·Ahoffmann on Mar 18 2021, 15:23.
Adding processing directly in the code in order to reduce output
fb5e50f8993c
·Ahoffmann on Mar 18 2021, 08:45.

Mar 16 2021

removed Sapj output analysis
afc1673539d1
·Ahoffmann on Mar 16 2021, 11:51.
update scripts
176447b078b3
·Ahoffmann on Mar 16 2021, 10:06.

Mar 15 2021

typo
edcfcb45adc6
·Ahoffmann on Mar 15 2021, 17:31.
gray is nicer
107bbcf3c015
·Ahoffmann on Mar 15 2021, 17:31.
Change the output organization, grid is now written once
fd805cf83a36
·Ahoffmann on Mar 15 2021, 16:38.
Added an option to start with only noise in phi for smoother starts
dd62fee629cf
·Ahoffmann on Mar 15 2021, 16:10.
Timer for communications
18dbca68d0c9
·Ahoffmann on Mar 15 2021, 16:09.
added closure in parameters to load
d01976674558
·Ahoffmann on Mar 15 2021, 16:08.

Mar 3 2021

post processing fixing
031ca67ff941
·Ahoffmann on Mar 3 2021, 11:24.

Mar 1 2021

New scripts for Marconi and Piz Daint HPC
0e7f77639707
·Ahoffmann on Mar 1 2021, 10:57.

Feb 22 2021

scripts update
03a6473f44ea
·Ahoffmann on Feb 22 2021, 11:11.

Feb 19 2021

removed unused p_damped j_damped
5e7f506d8d49
·Ahoffmann on Feb 19 2021, 15:13.
scripts update
2a5f329a8148
·Ahoffmann on Feb 19 2021, 11:20.

Feb 12 2021

typo
8b0e1eed463e
·Ahoffmann on Feb 12 2021, 16:00.
correction on Napj diagnostic
20f0096c6b30
·Ahoffmann on Feb 12 2021, 09:21.

Jan 15 2021

update scripts
9c460ecf6b6e
·Ahoffmann on Jan 15 2021, 14:32.

Jan 13 2021

Cleaning and ordering wk and matlab directories
969a1081e04c
·Ahoffmann on Jan 13 2021, 10:18.

Jan 12 2021

update matlab scripts
d1b82f9414b6
·Ahoffmann on Jan 12 2021, 15:47.

Jan 11 2021

Scripts updates
a2d76ab7d25a
·Ahoffmann on Jan 11 2021, 10:30.

Jan 4 2021

clean up
17244ee7e9a9
·Ahoffmann on Jan 4 2021, 13:56.

Dec 18 2020

move matlab auxiliary script
492966862e31
·Ahoffmann on Dec 18 2020, 15:02.

Dec 15 2020

Update on diagnostics : if nsave_nd = 0, no initial diagnostic anymore
78e603d998d7
·Ahoffmann on Dec 15 2020, 17:40.
to retrieve phase space distribution function
4a65992df0a0
·Ahoffmann on Dec 15 2020, 17:35.
Add a intern wallclock runtime end condition to avoid enforced slurm end
8236765d977c
·Ahoffmann on Dec 15 2020, 14:25.

Dec 14 2020

Added checkpoint saving rate as input parameter
84c2069410ca
·Ahoffmann on Dec 14 2020, 09:03.

Dec 10 2020

Change file management, the code is run directly from the results folder
2ae84092f813
·Ahoffmann on Dec 10 2020, 17:13.

Dec 7 2020

for Marconi protability
83d1bb824dda
·Ahoffmann on Dec 7 2020, 16:03.

Nov 24 2020

compiles and seems to work fine. Tests ahead
b37744a10054
·Ahoffmann on Nov 24 2020, 15:00.

Nov 18 2020

First MPI version (not working)
003c315a1937
·Ahoffmann on Nov 18 2020, 08:41.

Nov 2 2020

minor changes
1315f97a27f2
·Ahoffmann on Nov 2 2020, 14:33.

Oct 30 2020

Statistical analysis and 3D plots in phase space
f916da899a9b
·Ahoffmann on Oct 30 2020, 15:47.
Changed results folder organisation
152777100d90
·Ahoffmann on Oct 30 2020, 15:47.

Oct 27 2020

rmv
95737685d609
·Ahoffmann on Oct 27 2020, 16:18.
minor changes
b1b0b4c27f38
·Ahoffmann on Oct 27 2020, 10:48.
Scripts to study behavior of computational cost w.r.t. parameters
ad4e64eaf6f0
·Ahoffmann on Oct 27 2020, 10:48.

Oct 22 2020

Included a setup with sinusoidal background ES pot and density for KH
56b9dafb082c
·Ahoffmann on Oct 22 2020, 14:15.

Oct 5 2020

HeLaZ can now run in 1D over kz for growth rate study as MOLI
5b5157b79b2f
·Ahoffmann on Oct 5 2020, 14:52.
put kz > 0 instead of kr > 0
06b78cf31a87
·Ahoffmann on Oct 5 2020, 10:20.
slight changes
815be2d82380
·Ahoffmann on Oct 5 2020, 09:59.
added kpar terms and option
30bba2373d79
·Ahoffmann on Oct 5 2020, 09:59.

Sep 30 2020

Added non linear term and convolution through DFT with FFTW3
c039548751be
·Ahoffmann on Sep 30 2020, 17:31.
Backup before putting non linear solver
e04f06e1e9b9
·Ahoffmann on Sep 30 2020, 08:28.

Jul 10 2020

comparison between MOLI and HeLaZ on a 2D k grid
9ff600a1cabd
·Ahoffmann on Jul 10 2020, 09:18.
added kr parameter for MOLI
a67434b804e9
·Ahoffmann on Jul 10 2020, 09:18.
routine for gif creation
8736458d5239
·Ahoffmann on Jul 10 2020, 09:16.
routines for the non linear term
3a65bf26b154
·Ahoffmann on Jul 10 2020, 09:16.

Jul 8 2020

set linfitsolver off
8f1d3b4102c8
·Ahoffmann on Jul 8 2020, 10:02.

Jul 7 2020

Added title generation
2004d5b74cee
·Ahoffmann on Jul 7 2020, 10:10.
short version of LinearFit.m from MOLI which includes only ARM
2522b474bc94
·Ahoffmann on Jul 7 2020, 10:10.
Setting the linear fit solver to time evolution for kperp scan benchmark
ba01b590f3ba
·Ahoffmann on Jul 7 2020, 10:09.

Jul 3 2020

minor changes
86b0764f6142
·Ahoffmann on Jul 3 2020, 18:24.
tests for kperp scan
43291f7e97b1
·Ahoffmann on Jul 3 2020, 18:23.
Full coulomb COSOlver files can be read now
f994633ea802
·Ahoffmann on Jul 3 2020, 18:23.

Jun 26 2020

Small ajustement in names generations and comments
0c48b14e538f
·Ahoffmann on Jun 26 2020, 17:09.
Script to compare simple simulations with MOLI
292701d03073
·Ahoffmann on Jun 26 2020, 17:08.

Jun 24 2020

Launches MOLI in a neighbour directory with parameters set by HeLaZ
c3ef9af22065
·Ahoffmann on Jun 24 2020, 16:47.
to spare place in scripts
2d23ed16056f
·Ahoffmann on Jun 24 2020, 16:47.
routines for particular plots
8f6112d3ff6b
·Ahoffmann on Jun 24 2020, 16:44.

Jun 22 2020

matlab scripts for post processing
9530ffa47e82
·Ahoffmann on Jun 22 2020, 17:45.