Diffusion GYACOMO (OBSOLETE: LATEST VERSION ON gitlab.epfl.ch) (master) History

gyacomo/src
masterc3e24483baac8eb5aa0bad9…

Oct 14 2022

Miller geometry is implemented, not benchmarked yet
c3e24483baac
·Ahoffmann on Oct 14 2022, 16:59.

Oct 13 2022

first commit of the miller geometry of GENE
3e25e74715ef
·Ahoffmann on Oct 13 2022, 15:21.
small typo
c3ea2308c07e
·Ahoffmann on Oct 13 2022, 15:17.

Oct 11 2022

computation of kp_max for warning message was missing
5cc6fc25ce92
·Ahoffmann on Oct 11 2022, 13:40.

Oct 10 2022

try to match GENE for powjac init
cc934e6acdd3
·Ahoffmann on Oct 10 2022, 11:18.
include 2/3 rule in the numerical diffusion normalization
107864623e8e
·Ahoffmann on Oct 10 2022, 11:17.
use of general indices variable instead of numbers
08fa3efba999
·Ahoffmann on Oct 10 2022, 11:12.

Oct 6 2022

small correction to put z=0 when zpinch
c1cb054eecd1
·Ahoffmann on Oct 6 2022, 14:29.

Oct 3 2022

added copyright to the top of the code
b7f629a5e072
·Ahoffmann on Oct 3 2022, 18:08.

Sep 30 2022

minor changes
fa11381ba376
·Ahoffmann on Sep 30 2022, 15:24.

Sep 29 2022

added a collision cutoff frequency
945aa653658f
·Ahoffmann on Sep 29 2022, 17:59.

Sep 27 2022

typo
c443c0651253
·Ahoffmann on Sep 27 2022, 15:06.
modif on how Lx is adapted. Nexc=-1 means adapt Nexc to Lx
176e95744f06
·Ahoffmann on Sep 27 2022, 15:06.
small feature to spit the ES field at the current time in txt file
27da1dc80fb5
·Ahoffmann on Sep 27 2022, 15:05.

Sep 21 2022

typo
28ead18ab14c
·Ahoffmann on Sep 21 2022, 17:50.
flags for EM
67e0741659c6
·Ahoffmann on Sep 21 2022, 17:44.
EM for transport
96062c8b894d
·Ahoffmann on Sep 21 2022, 17:44.
flags for storing logical computations
4b618ae3eabc
·Ahoffmann on Sep 21 2022, 12:01.
Ampere and Poisson equations
a31d7666e75d
·Ahoffmann on Sep 21 2022, 12:00.
EM effects and gradients renaming
6b4a82ec081d
·Ahoffmann on Sep 21 2022, 11:51.
EM implementation and small rewriting
ce66464e5cf0
·Ahoffmann on Sep 21 2022, 11:50.
flag for EM effects and separation of species background gradients
6796aee960a2
·Ahoffmann on Sep 21 2022, 11:48.
renamed z num diff term
398db051840e
·Ahoffmann on Sep 21 2022, 11:40.
init ppj is now deltak scaled
d543ce4316d3
·Ahoffmann on Sep 21 2022, 11:36.
kx can be even, z fourth order diffusion
621b6cd7be34
·Ahoffmann on Sep 21 2022, 11:35.
renumbered communication for psi ghosts
da589b539dde
·Ahoffmann on Sep 21 2022, 11:18.
Clean and Added Nexc parameter, not working yet for Nexc > 1
37641e0d94b6
·Ahoffmann on Sep 21 2022, 11:18.
+ nonlinear electromagnetic effects
869994cb6813
·Ahoffmann on Sep 21 2022, 11:17.
renamed the z diffusion term
bc0313759dab
·Ahoffmann on Sep 21 2022, 11:16.

Aug 5 2022

Merge branch 'master' into KBM
e48548c7e24e
·Ahoffmann on Aug 5 2022, 17:58.
Restart loads full checkpoint on every process, 10x faster on marconi
54e987c4ae2e
·Ahoffmann on Aug 5 2022, 17:54.
Added eta_T, eta_N parameters to change gradients according to species
9f046171f545
·Ahoffmann on Aug 5 2022, 17:54.
Added Nexc parameters to extend Lx when shear>0, not benchmarked
686376c11c72
·Ahoffmann on Aug 5 2022, 17:53.
circular geometry, not benchmarked yet
e517f80ac48f
·Ahoffmann on Aug 5 2022, 17:50.

Aug 3 2022

Infos about loading time (temporary)
0d8aaa24d630
·Ahoffmann on Aug 3 2022, 13:54.

Aug 2 2022

scripts updates
82cf09cf1ba4
·Ahoffmann on Aug 2 2022, 14:02.

Jul 29 2022

Ampere solver ready
6c5afda664ee
·Ahoffmann on Jul 29 2022, 11:26.
scripts updates
f6cc280a5fde
·Ahoffmann on Jul 29 2022, 10:03.

Jul 20 2022

typoo... Latest version works with shear, EM not benchmarked yet
58e3aade1dc4
·Ahoffmann on Jul 20 2022, 10:53.
added EM effects (psi and ampere), not verified
7a87e593c0af
·Ahoffmann on Jul 20 2022, 10:09.

Jul 18 2022

HeLaZ includes now magnetic shear. Linearly benchmarked with GENE
ea846d5c10f7
·branch: shear_version
·Ahoffmann on Jul 18 2022, 15:35.

Jul 7 2022

Correction of the normalization of the c2r fourier transform
11c2edfaa957
·Ahoffmann on Jul 7 2022, 16:49.
dougherty DK correction
23f28976bd53
·Ahoffmann on Jul 7 2022, 15:55.

Jul 5 2022

HD bug
c81dd03679d2
·Ahoffmann on Jul 5 2022, 14:14.
CRITICAL DEBUG KINETIC ELECTRONS (appeared when kxky plane rotated)
88422c26fb4e
·Ahoffmann on Jul 5 2022, 12:03.
Added new parameter to control the order of numerical dissipation
fa51343eeece
·Ahoffmann on Jul 5 2022, 12:02.

Jul 1 2022

added scaled spatial hyperdiffusion
86d82f990c06
·Ahoffmann on Jul 1 2022, 16:14.
small changes
bce3118a6b92
·Ahoffmann on Jul 1 2022, 16:14.
compressed ghosts routines and ensured sheared=false for zpinch
e30a7e7ee481
·Ahoffmann on Jul 1 2022, 11:52.
small corrections
db1dbff368d8
·Ahoffmann on Jul 1 2022, 09:51.

Jun 30 2022

small update
6747c30adba5
·Ahoffmann on Jun 30 2022, 18:05.

Jun 24 2022

shear setup
a51d92a0d1c3
·Ahoffmann on Jun 24 2022, 09:40.
electron fluxes update
ef1f55d585fa
·Ahoffmann on Jun 24 2022, 09:16.

Jun 23 2022

first shear implementation
de0ac4c5f642
·Ahoffmann on Jun 23 2022, 16:11.
added electron radial heatflux and particle transport
fc0f42a25880
·Ahoffmann on Jun 23 2022, 16:11.

Jun 21 2022

typo for kinetic electrons nonlinear term
e80c03b0efcf
·Ahoffmann on Jun 21 2022, 17:08.

Jun 20 2022

typo ghosts
df1b1586f5bb
·Ahoffmann on Jun 20 2022, 11:06.

Jun 17 2022

ppj init tests
a2aae1bcd96a
·Ahoffmann on Jun 17 2022, 14:39.
correction + 2 factor on the heat flux
2b92585d4ee5
·Ahoffmann on Jun 17 2022, 14:39.
added maxwellian background term for test purpose
46c46efca57a
·Ahoffmann on Jun 17 2022, 14:38.

Jun 9 2022

cleaning, adiabe is now benchmarked
b13d79d38569
·Ahoffmann on Jun 9 2022, 11:01.
Error on the weights for simpson rule
29d036c6d821
·Ahoffmann on Jun 9 2022, 11:01.

Jun 8 2022

small bug that forced CLOS=1
0d7d13ac685b
·Ahoffmann on Jun 8 2022, 15:48.
better USE, ONLY
0b5580653754
·Ahoffmann on Jun 8 2022, 11:08.
important bug correction in poisson equation for adiabatic electron
cd641add21fc
·Ahoffmann on Jun 8 2022, 11:07.

Jun 3 2022

Merge branch 'gather_output'
99e53477befe
·Ahoffmann on Jun 3 2022, 12:14.
removed headers
55a2769372fe
·branch: gather_output
·Ahoffmann on Jun 3 2022, 12:12.
removed redundant terminal output
bc8c45f9717a
·Ahoffmann on Jun 3 2022, 11:52.
reduced terminal verbose
290333e5f385
·Ahoffmann on Jun 3 2022, 10:39.

Jun 2 2022

single node gatherv output is ready
cbad6e727780
·Ahoffmann on Jun 2 2022, 15:27.
ongoing for gatherv output
68091c713050
·Ahoffmann on Jun 2 2022, 09:56.

Jun 1 2022

bug
0dfe3bc0abae
·Ahoffmann on Jun 1 2022, 13:55.

May 25 2022

implementing gatherv output
5931c32a9006
·Ahoffmann on May 25 2022, 17:42.
bug
8b5a388024af
·Ahoffmann on May 25 2022, 10:58.
put 4th order hyp z and scaled mu_z like in gene
0d734fad7b46
·Ahoffmann on May 25 2022, 10:57.

May 24 2022

new output start and hyp_z corrections
3f25a0efc43c
·branch: divided_output
·Ahoffmann on May 24 2022, 14:49.

May 19 2022

tentative of a single process output version of the code
a65d383b011f
·Ahoffmann on May 19 2022, 13:21.

May 16 2022

output can be now divided, very important for marconi comm
bfc2f4531846
·Ahoffmann on May 16 2022, 09:43.

May 12 2022

First commit of a version that can create multiple outputs
fafef78fc658
·Ahoffmann on May 12 2022, 17:33.

May 11 2022

output napjz spectrum and corrected clos 1 bug
c400defa9af0
·Ahoffmann on May 11 2022, 10:02.

May 10 2022

added the degree closure on moments
9df7bc48d8fc
·Ahoffmann on May 10 2022, 09:40.

May 9 2022

ensure closure 1 condition
4ae8a4aad17e
·Ahoffmann on May 9 2022, 18:46.

May 4 2022

rm srcinfo to stop tracking it
cdeb3c5448cc
·Ahoffmann on May 4 2022, 09:31.
debug
ac59658d552c
·Ahoffmann on May 4 2022, 09:30.

May 3 2022

update scripts for new ky kx rep
cd9c3e804ccb
·Ahoffmann on May 3 2022, 17:32.
debugged
db9967c54b20
·branch: half_ky_plane
·Ahoffmann on May 3 2022, 12:00.
dbg
64580260bcbe
·Ahoffmann on May 3 2022, 08:47.

May 2 2022

Scripts adaptations
507e9cf9419b
·Ahoffmann on May 2 2022, 14:55.
dbg
38a4f6e3a758
·Ahoffmann on May 2 2022, 09:31.

Apr 29 2022

debug
e4c9228f87ef
·Ahoffmann on Apr 29 2022, 18:37.
kx,ky -> ky,kx
b4318b505ff7
·Ahoffmann on Apr 29 2022, 18:13.
various
c4a68c61226b
·Ahoffmann on Apr 29 2022, 15:15.
aux array for grad and interp
af01eb6adc92
·Ahoffmann on Apr 29 2022, 15:15.
new time measurement for profiling
396f22d09037
·Ahoffmann on Apr 29 2022, 15:14.
Small loops optimization
72ce6017aa73
·Ahoffmann on Apr 29 2022, 15:14.

Apr 25 2022

src info updates
7642d96aa748
·Ahoffmann on Apr 25 2022, 13:56.
hard stop if CO not recognized
47d51fc9279a
·Ahoffmann on Apr 25 2022, 13:56.
created a geometry namelist for input and moved variables to geom module
789906ab465e
·Ahoffmann on Apr 25 2022, 13:55.

Apr 8 2022

xphij arrays and fort.90 + marconi batch script
7ee703feb0b9
·branch: 3D_parallel
·Ahoffmann on Apr 8 2022, 13:51.
z parallel and collision + specie dependency on xphi terms
229862936351
·Ahoffmann on Apr 8 2022, 13:44.

gyacomo/srcmasterc3e24483baac8eb5aa0bad9…

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gyacomo/src
masterc3e24483baac8eb5aa0bad9…