Diffusion BIOP Run Macro (master) History

ijp-biop-run-macro/Coloc_2.java
master969e0416ee0eb11c25faa56…

Feb 20 2011

Coloc 2: Reorder readout of GUI and add PSF and nr. of randomisations inputs
332c163846e0
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Style changes
b8806b8cb5a2
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Set Costes' default PSF size to 3 (was 1!)
94624b47ae5e
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Let Fiji handle the MissingPreconditionExceptions
895181d6d658
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: add test for if only 1 image is open
2af57cb09b8a
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Style changes
30a52606f3a3
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Allow masks to be specified as separate images
f1df82a5f470
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Select the correct Fiji image when importing masks
747233aa0579
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add own little bounding box class to represent multi-dim BBs
6bc0b7742897
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add lost functionality to colocalise images withoul ROI/mask
888ae16cdc25
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Remove unnecessary if and complain about missing separte image masks
a23eea34ba5a
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add basic multi ROI support
7e5d4bf7374f
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Remember a masks bounding box clipped version
2fbc9492f8a0
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Style changes
1ff364e98842
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Require the offset and the size of a masks bounding box
f8e95e85c0d6
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Encapsulate irregular IJ mask preparation in own method
c0144f22f82e
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add ROI/mask image (if present) to result set
744469522413
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Style changes
612f7b21fbe4
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Remve not needed roi usage indicator variable
1668807d4d09
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add ROI/Mask selection to GUI
2b8f0d4e5b8f
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Style changes
a0cca6fd0d74
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Let the plugin allow ROIs again, now arbitrary shaped
7d3b617723e4
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: explicit GPL license text added... just in case.
43266c5c98e0
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Style change
d6aaeeaa3b25
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add package information to all files
d30e7e98f5a2
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: allow multiple ResultHandlers to be run
bad73128afb8
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Pearson gets now executed all the time
c5ad87759bf4
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Let AutoThresholdRegression store an already existing Pearson object
c64a489ea05e
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Style changes
5f3c8e3e7fb4
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add algorithm options to basic GUI
89522ed46c26
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add a very basic GUI
0b439fdc8e32
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Reorder exception handling in contoller
948ba6ffdfb8
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add costes siginificance test
a42117eafc78
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Clean up the DataContainer
93c6dfe9ac5f
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Rebuild results handling structure
bcb07b708a5f
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Make results architecture more simple
e8a04d744b08
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Actually use Mander's calculation
e088766c198b
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: If a ROI is placed on image one, it is now recognized.
8dfdae216876
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Add LiICQ to the jobs that get run
e1b112833851
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: The SingleWindowDisplay is again the default display
3e419a38bb30
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Use InputCheck and AutoThreshold as preprocessing jobs
9430ea5f6cdb
·Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: Use EasyDisplay again to display text results and use AutoThreshold…
27990f00e1b2
·Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: Li 2 Histogram, enable selection fo whuch channel for y axis
95c84df40417
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: default file reading behavior is now to use already open images 1 and 2
0ffed86e5521
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: Add an implementation for Li's scatter plot
2732b75d8d49
·Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: Make developement image launch code more portable
efa93a6523f5
·Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: allow the 2 data channels to be swapped for drawing Histogram2D
f0d17494a7a6
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: new SingleWindowDisplay class for organised results display/output
4695cd50c619
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: remove tags methd for labelling results objects
442e4691ef3b
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: teach EasyDisplay to display an image from imglib Image
61f32130c8cb
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: add class for calcualting the min and max of an image
be4066c19c46
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: added the fast method of calculating Pearson's correlation
b3317a164921
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:32.
Coloc 2: Add class for running/controlling the plugin
74d3c28eb23c
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:32.

ijp-biop-run-macro/Coloc_2.javamaster969e0416ee0eb11c25faa56…

Feb 20 2011

ijp-biop-run-macro/Coloc_2.java
master969e0416ee0eb11c25faa56…