Diffusion lammps (efficient_neuronet) History

lammps/examples
efficient_neuronetc841d1dcb06e84d9059fd69…

Oct 26 2014

update colvars reference log files with current LAMMPS/colvars version
c841d1dcb06e
·Axel Kohlmeyer on Oct 26 2014, 09:46.

Oct 25 2014

simple input examples for testing more colvars use cases for syntax and files…
a8a95efae3e7
·Axel Kohlmeyer on Oct 25 2014, 16:36.

Oct 9 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
a05fa107d8ff
·Axel Kohlmeyer on Oct 9 2014, 19:03.

Oct 7 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12605 f3b2605a-c512-4ea7…
bd26134155d9
·sjplimp on Oct 7 2014, 19:30.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12602 f3b2605a-c512-4ea7…
5be413fc73e8
·sjplimp on Oct 7 2014, 18:58.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12601 f3b2605a-c512-4ea7…
6b7d9371947f
·sjplimp on Oct 7 2014, 18:52.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12600 f3b2605a-c512-4ea7…
6bea73f245f5
·sjplimp on Oct 7 2014, 17:34.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12599 f3b2605a-c512-4ea7…
6ba871c80ff7
·sjplimp on Oct 7 2014, 17:34.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12598 f3b2605a-c512-4ea7…
c5ad12114d7c
·sjplimp on Oct 7 2014, 17:33.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12596 f3b2605a-c512-4ea7…
69f2390b0685
·sjplimp on Oct 7 2014, 17:24.

Sep 27 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
9dd1fd29b218
·Axel Kohlmeyer on Sep 27 2014, 12:34.

Sep 26 2014

Fixing broken basal example
bf8b5e4d630a
·stamoor on Sep 26 2014, 19:00.
Fixing broken USER-EFF example
62c95d86a8dc
·stamoor on Sep 26 2014, 16:57.

Sep 25 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
190974a167ba
·Axel Kohlmeyer on Sep 25 2014, 17:23.

Sep 24 2014

Change fix box/relax example to be more efficient
fb705efa84eb
·athomps on Sep 24 2014, 02:46.

Sep 22 2014

Fixing broken USER-INTEL examples
5ae8de8f47aa
·stamoor on Sep 22 2014, 17:39.

Sep 20 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
3091e09e61c6
·Axel Kohlmeyer on Sep 20 2014, 19:20.

Sep 18 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12520 f3b2605a-c512-4ea7…
dbb4fd7e7582
·sjplimp on Sep 18 2014, 16:39.

Sep 12 2014

Merge remote branch 'lammps-ro/master' into lammps-icms
e162a292b673
·Axel Kohlmeyer on Sep 12 2014, 13:07.

Sep 11 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12497 f3b2605a-c512-4ea7…
5910f5103170
·sjplimp on Sep 11 2014, 22:24.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12496 f3b2605a-c512-4ea7…
4a95b0047713
·sjplimp on Sep 11 2014, 18:58.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12494 f3b2605a-c512-4ea7…
bbc60e3aefaa
·sjplimp on Sep 11 2014, 18:54.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12493 f3b2605a-c512-4ea7…
35642380446d
·sjplimp on Sep 11 2014, 18:54.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12492 f3b2605a-c512-4ea7…
978269a4cedc
·sjplimp on Sep 11 2014, 18:47.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12491 f3b2605a-c512-4ea7…
010542ff0595
·sjplimp on Sep 11 2014, 18:39.
Merge remote branch 'lammps-ro/master' into lammps-icms
052a84f81d89
·Axel Kohlmeyer on Sep 11 2014, 13:44.

Sep 10 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12476 f3b2605a-c512-4ea7…
b73b7a82533c
·sjplimp on Sep 10 2014, 23:05.

Sep 9 2014

Merge remote branch 'lammps-ro/master' into lammps-icms
f977c2663f1b
·Axel Kohlmeyer on Sep 9 2014, 13:21.

Sep 8 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12439 f3b2605a-c512-4ea7…
1b19868c9760
·sjplimp on Sep 8 2014, 18:10.
Add line describing snap
7551af229efe
·athomps on Sep 8 2014, 17:46.

Sep 6 2014

Merge remote branch 'lammps-ro/master' into lammps-icms
d12eca24b839
·Axel Kohlmeyer on Sep 6 2014, 15:25.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12426 f3b2605a-c512-4ea7…
3e4d6f2096d6
·sjplimp on Sep 6 2014, 01:24.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12419 f3b2605a-c512-4ea7…
77dedf106316
·sjplimp on Sep 6 2014, 01:02.

Sep 5 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12408 f3b2605a-c512-4ea7…
8dce3d380cf8
·sjplimp on Sep 5 2014, 16:49.

Aug 27 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12363 f3b2605a-c512-4ea7…
b3f5ea4d8350
·sjplimp on Aug 27 2014, 18:15.

Aug 26 2014

refactor ray's elastic too for portability
cf8ad2306612
·Axel Kohlmeyer on Aug 26 2014, 21:00.

Aug 17 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
1172085ecd76
·Axel Kohlmeyer on Aug 17 2014, 01:31.

Aug 15 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12330 f3b2605a-c512-4ea7…
6e622a54af37
·sjplimp on Aug 15 2014, 17:29.

Aug 14 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12312 f3b2605a-c512-4ea7…
d6c42ed94bb0
·sjplimp on Aug 14 2014, 18:30.

Aug 12 2014

overhaul of fix ipi to be more consistent with LAMMPS programming conventions
dbc55a403f74
·Axel Kohlmeyer on Aug 12 2014, 17:33.
include example for i-PI use with fix ipi
f78d0004f3be
·Axel Kohlmeyer on Aug 12 2014, 00:00.

Aug 10 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
4c79bce7f1cb
·Axel Kohlmeyer on Aug 10 2014, 02:10.

Aug 9 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12292 f3b2605a-c512-4ea7…
f75219da7021
·sjplimp on Aug 9 2014, 00:00.

Aug 7 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
4a197537c015
·Axel Kohlmeyer on Aug 7 2014, 14:24.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12266 f3b2605a-c512-4ea7…
1177fd9af33b
·sjplimp on Aug 7 2014, 01:30.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12265 f3b2605a-c512-4ea7…
d1148fd1ee5a
·sjplimp on Aug 7 2014, 01:29.

Aug 5 2014

clean up reading of C matrix and fix missing scaling bug
57b8a339eb7e
·Axel Kohlmeyer on Aug 5 2014, 07:51.
cleaned up code some. doesn't seem to fully work yet.
8821eb0518c9
·Axel Kohlmeyer on Aug 5 2014, 07:14.
update input examples to be more similar to other LAMMPS examples
c46236d70686
·Axel Kohlmeyer on Aug 5 2014, 05:09.
import updated GLE fix from michele ceriotti
ff3961492620
·Axel Kohlmeyer on Aug 5 2014, 04:17.

Jul 25 2014

Merge branch 'lammps-icms' into cle-orig
3d8a65e85b0c
·Axel Kohlmeyer on Jul 25 2014, 13:08.

Jul 24 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
512038de6fc6
·Axel Kohlmeyer on Jul 24 2014, 19:11.

Jul 22 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12193 f3b2605a-c512-4ea7…
e9a0ca6dca75
·pscrozi on Jul 22 2014, 20:31.

Jul 2 2014

Merge branch 'lammps-icms' into cle-orig
934347e56584
·Axel Kohlmeyer on Jul 2 2014, 17:59.

Jul 1 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
29ae4bd8dc3d
·Axel Kohlmeyer on Jul 1 2014, 18:08.

Jun 27 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12149 f3b2605a-c512-4ea7…
ae2d215b8c58
·sjplimp on Jun 27 2014, 19:35.

Jun 24 2014

import colored langevin thermostat package from michele ceriotti
86d4432ff882
·Axel Kohlmeyer on Jun 24 2014, 00:15.

Jun 11 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
063fae8961fb
·Axel Kohlmeyer on Jun 11 2014, 12:15.

Jun 10 2014

Fixing more broken USER-EFF examples
7e1c6ccfac6f
·stamoor on Jun 10 2014, 20:17.
Fixing broken USER-EFF examples
fcb81d2b48e5
·stamoor on Jun 10 2014, 19:00.
Updating USER-EFF examples to use compute property/atom
00db690e6437
·stamoor on Jun 10 2014, 18:07.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12107 f3b2605a-c512-4ea7…
28b9fa375408
·sjplimp on Jun 10 2014, 17:03.

Jun 8 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
1ee7cb100d97
·Axel Kohlmeyer on Jun 8 2014, 01:29.

Jun 7 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12096 f3b2605a-c512-4ea7…
6123f2420033
·sjplimp on Jun 7 2014, 01:41.

Jun 6 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12095 f3b2605a-c512-4ea7…
a466230f4a9e
·sjplimp on Jun 6 2014, 23:52.

Jun 5 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12090 f3b2605a-c512-4ea7…
0078b0956b6f
·sjplimp on Jun 5 2014, 14:52.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12089 f3b2605a-c512-4ea7…
8dad71810cf4
·sjplimp on Jun 5 2014, 14:52.

Jun 4 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12066 f3b2605a-c512-4ea7…
c4c6bae7dc53
·sjplimp on Jun 4 2014, 17:51.

Jun 2 2014

Merge remote branch 'lammps-ro/master' into lammps-kokkos
895ca766eeec
·Axel Kohlmeyer on Jun 2 2014, 10:45.

May 30 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12042 f3b2605a-c512-4ea7…
30361f0dfaea
·sjplimp on May 30 2014, 00:52.

May 14 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
f9f7283fa5c5
·Axel Kohlmeyer on May 14 2014, 13:18.

May 13 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11985 f3b2605a-c512-4ea7…
8a9ba2d05037
·sjplimp on May 13 2014, 18:52.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11983 f3b2605a-c512-4ea7…
f9864c81e0eb
·sjplimp on May 13 2014, 18:17.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
8d4a991b75ac
·Axel Kohlmeyer on May 13 2014, 12:21.

May 12 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11972 f3b2605a-c512-4ea7…
2c60c00b31ba
·sjplimp on May 12 2014, 17:26.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11971 f3b2605a-c512-4ea7…
6773e3be00bb
·sjplimp on May 12 2014, 17:24.

May 10 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
24fb679e5579
·Axel Kohlmeyer on May 10 2014, 23:15.

May 9 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11956 f3b2605a-c512-4ea7…
944b898d7128
·sjplimp on May 9 2014, 17:35.

May 8 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
4acacd8e3b18
·Axel Kohlmeyer on May 8 2014, 14:49.

May 7 2014

Added viscosity estimate from diagonal shear stress
4ab16d538868
·athomps on May 7 2014, 18:05.

May 3 2014

Merge branch 'lammps-icms' of bitbucket.org:akohlmey/lammps-icms into lammps…
d906ce46d6fd
·Axel Kohlmeyer on May 3 2014, 15:17.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
4fbf7105d6be
·Axel Kohlmeyer on May 3 2014, 14:13.

May 2 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11902 f3b2605a-c512-4ea7…
ec54a1281593
·sjplimp on May 2 2014, 22:47.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11901 f3b2605a-c512-4ea7…
fbe748457392
·sjplimp on May 2 2014, 22:47.
remove redundant files
86843200fdca
·Axel Kohlmeyer on May 2 2014, 22:24.

Apr 24 2014

update examples for USER-FEP
99f9652c492a
·Axel Kohlmeyer on Apr 24 2014, 23:46.

Apr 21 2014

reworked USER-FEP code to emit less warnings and be USER-OMP compatible
e04545e26d80
·Axel Kohlmeyer on Apr 21 2014, 23:16.

Apr 19 2014

Merge branch 'lammps-icms' into merge-user-fep
1166a4c75a8f
·Axel Kohlmeyer on Apr 19 2014, 13:15.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
517a48da9a86
·Axel Kohlmeyer on Apr 19 2014, 13:04.

Apr 18 2014

add files missing from previous import of the project
89044ec1f89e
·Axel Kohlmeyer on Apr 18 2014, 20:43.
import USER-FEP package from https://github.com/agiliopadua/compute_fep
69c06791a580
·Axel Kohlmeyer on Apr 18 2014, 20:35.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11828 f3b2605a-c512-4ea7…
c62e2a91c441
·sjplimp on Apr 18 2014, 17:16.

Apr 16 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
0a1f876f4e42
·Axel Kohlmeyer on Apr 16 2014, 00:13.

Apr 14 2014

Fixed broken basal example
1f0a6ae006ad
·stamoor on Apr 14 2014, 23:24.
Fixed broken examples by adding NULL after stess/atom commands
532a4e66fb6b
·stamoor on Apr 14 2014, 23:08.

Apr 11 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11776 f3b2605a-c512-4ea7…
d45cca6714a1
·sjplimp on Apr 11 2014, 16:42.
correct input scripts to work with the current LAMMPS code
1f5400e15304
·Axel Kohlmeyer on Apr 11 2014, 12:59.

Apr 9 2014

Merge remote branch 'lammps-ro/master' into lammps-icms
f8daecd639f4
·Axel Kohlmeyer on Apr 9 2014, 13:49.

Apr 8 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11737 f3b2605a-c512-4ea7…
0b8bc83b4b9f
·sjplimp on Apr 8 2014, 18:57.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11736 f3b2605a-c512-4ea7…
a683e4f52d6f
·sjplimp on Apr 8 2014, 18:56.

lammps/examplesefficient_neuronetc841d1dcb06e84d9059fd69…

Oct 26 2014

Oct 25 2014

Oct 9 2014

Oct 7 2014

Sep 27 2014

Sep 26 2014

Sep 25 2014

Sep 24 2014

Sep 22 2014

Sep 20 2014

Sep 18 2014

Sep 12 2014

Sep 11 2014

Sep 10 2014

Sep 9 2014

Sep 8 2014

Sep 6 2014

Sep 5 2014

Aug 27 2014

Aug 26 2014

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Aug 15 2014

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Aug 10 2014

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Jul 1 2014

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Apr 8 2014

lammps/examples
efficient_neuronetc841d1dcb06e84d9059fd69…