Diffusion lammps (efficient_neuronet) History

lammps/lib
efficient_neuronetdb1e17197fcfc1b5dc4c472…

Aug 15 2012

Merge branch 'master' into lammps-icms
ffc41c52c5cd
·Axel Kohlmeyer on Aug 15 2012, 14:38.

Aug 14 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8648 f3b2605a-c512-4ea7…
7365c2cfe623
·sjplimp on Aug 14 2012, 16:22.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8647 f3b2605a-c512-4ea7…
f2bade874d39
·sjplimp on Aug 14 2012, 16:21.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8646 f3b2605a-c512-4ea7…
e19e06952fcc
·sjplimp on Aug 14 2012, 16:20.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8645 f3b2605a-c512-4ea7…
15a86b4bcdbf
·sjplimp on Aug 14 2012, 16:17.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8644 f3b2605a-c512-4ea7…
533db036493e
·sjplimp on Aug 14 2012, 16:16.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8643 f3b2605a-c512-4ea7…
1b8aa27fe555
·sjplimp on Aug 14 2012, 16:16.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8642 f3b2605a-c512-4ea7…
14e3a6e2c9b4
·sjplimp on Aug 14 2012, 16:15.

Aug 8 2012

update colvarmodule code to svn as of aug 8 2012
b898d5d163b4
·Axel Kohlmeyer on Aug 8 2012, 11:15.

Aug 3 2012

Merge branch 'lammps-colvars' into lammps-icms
4c70fbfd8b93
·Axel Kohlmeyer on Aug 3 2012, 11:40.
some more cutomizations for libraries
4bc860561ca5
·Axel Kohlmeyer on Aug 3 2012, 11:32.
upgrade colvars module to july 17 2012 version
fa5861bc2d27
·Axel Kohlmeyer on Aug 3 2012, 11:15.

Jun 30 2012

Merge branch 'master' into lammps-icms
2a099bfedb48
·Axel Kohlmeyer on Jun 30 2012, 17:23.

Jun 29 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8433 f3b2605a-c512-4ea7…
fee52f2fac2b
·sjplimp on Jun 29 2012, 19:52.

Jun 28 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8419 f3b2605a-c512-4ea7…
9db45bcb9269
·sjplimp on Jun 28 2012, 01:15.

Jun 24 2012

update colvars module with the latest version
e163a2f089c9
·Axel Kohlmeyer on Jun 24 2012, 02:10.
Merge branch 'lammps-icms' into lammps-colvars
5c64815a2a39
·Axel Kohlmeyer on Jun 24 2012, 02:06.

Jun 20 2012

Merge branch 'master' into lammps-icms
4441f9b5aafd
·Axel Kohlmeyer on Jun 20 2012, 15:11.

Jun 19 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8336 f3b2605a-c512-4ea7…
d4c19826bac9
·sjplimp on Jun 19 2012, 21:45.

Jun 15 2012

Merge branch 'lammps-icms' into lammps-colvars
725578a97828
·Axel Kohlmeyer on Jun 15 2012, 20:37.

Jun 14 2012

Merge branch 'lammps-icms' into lammps-molfile
0fede4ae98e9
·Axel Kohlmeyer on Jun 14 2012, 16:40.
Merge branch 'master' into lammps-icms
dd4f21087a56
·Axel Kohlmeyer on Jun 14 2012, 14:56.

Jun 13 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8279 f3b2605a-c512-4ea7…
03967d227031
·sjplimp on Jun 13 2012, 18:40.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8278 f3b2605a-c512-4ea7…
49a004194cee
·sjplimp on Jun 13 2012, 18:35.

Jun 8 2012

Merge branch 'lammps-icms' into lammps-colvars
b71eaa9e1d70
·Axel Kohlmeyer on Jun 8 2012, 01:17.
update colvars library to latest version
13b28920ac91
·Axel Kohlmeyer on Jun 8 2012, 01:12.
fix typo
fffc66eef2ef
·Axel Kohlmeyer on Jun 8 2012, 00:31.

Jun 1 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8207 f3b2605a-c512-4ea7…
611e614170e9
·sjplimp on Jun 1 2012, 19:21.
fix typo
63ec8368b0e2
·Axel Kohlmeyer on Jun 1 2012, 06:59.
update library makefiles for cross-compilation with new compile
d4c275d4cc41
·Axel Kohlmeyer on Jun 1 2012, 06:59.

May 23 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8162 f3b2605a-c512-4ea7…
1cfdda1f82b6
·sjplimp on May 23 2012, 18:20.

Apr 29 2012

compile poems lib with optimization
1b011d92f2f3
·Axel Kohlmeyer on Apr 29 2012, 01:34.
compile meam lib with optimization
481b12a04a63
·Axel Kohlmeyer on Apr 29 2012, 01:34.

Apr 21 2012

import filename bugfix from colvars repo
2e0a78eb82b1
·Axel Kohlmeyer on Apr 21 2012, 00:56.

Apr 20 2012

Merge branch 'master' into lammps-icms
ca9da5d35ee1
·Axel Kohlmeyer on Apr 20 2012, 19:50.

Apr 19 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8027 f3b2605a-c512-4ea7…
0a85b18a46e8
·sjplimp on Apr 19 2012, 21:30.

Apr 13 2012

pmf output bugfix imported from colvars upstream
fa7fb14b6438
·Axel Kohlmeyer on Apr 13 2012, 00:52.

Mar 30 2012

don't use cudpp and relocatable compilation.
816e87c46f16
·Axel Kohlmeyer on Mar 30 2012, 15:53.

Mar 29 2012

Merge branch 'lammps-icms' into lammps-colvars
22d52a2141e3
·Axel Kohlmeyer on Mar 29 2012, 16:47.
Merge branch 'master' into lammps-icms
99851266a8fc
·Axel Kohlmeyer on Mar 29 2012, 16:47.
rename c++ files in colvars to match common style
eadce7749bc5
·Axel Kohlmeyer on Mar 29 2012, 16:00.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7989 f3b2605a-c512-4ea7…
f3905bf229dd
·sjplimp on Mar 29 2012, 00:10.

Mar 25 2012

update build system
ebfba1ea654b
·Axel Kohlmeyer on Mar 25 2012, 01:39.
update colvars library from svn archive
cc0f97415170
·Axel Kohlmeyer on Mar 25 2012, 01:39.

Mar 22 2012

import latest colvar module code from svn.
1b6cfc4caa97
·Axel Kohlmeyer on Mar 22 2012, 01:39.
Merge branch 'master' into lammps-icms
27fdf790e4b1
·Axel Kohlmeyer on Mar 22 2012, 01:20.

Mar 20 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7961 f3b2605a-c512-4ea7…
740542f23b52
·sjplimp on Mar 20 2012, 15:05.

Mar 17 2012

updated documentation with reference to paper
b1af777efb74
·Axel Kohlmeyer on Mar 17 2012, 22:34.

Mar 13 2012

add hint for compiling with debug info enabled
b4629fdd590d
·Axel Kohlmeyer on Mar 13 2012, 03:55.

Mar 8 2012

use more portable optimization flages
b80661d045ab
·Axel Kohlmeyer on Mar 8 2012, 03:33.
first fully working version of the colvars module
82a43ae07818
·Axel Kohlmeyer on Mar 8 2012, 03:06.

Mar 7 2012

need to reset proxiy pointer to NULL in destructor
5c27661f0077
·Axel Kohlmeyer on Mar 7 2012, 23:37.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7922 f3b2605a-c512-4ea7…
a1f79c40fe04
·sjplimp on Mar 7 2012, 16:00.
Merge branch 'lammps-icms' into lammps-colvars
8df6168a2d50
·Axel Kohlmeyer on Mar 7 2012, 05:18.
import OpenCL bugfix from mike brown.
10ac23c12008
·Axel Kohlmeyer on Mar 7 2012, 05:18.

Mar 6 2012

Merge branch 'lammps-icms' into lammps-colvars
297d720e65b0
·Axel Kohlmeyer on Mar 6 2012, 21:54.
reinstate full cg/cmm compatibility for USER-CUDA
9f1e6e5c771a
·Axel Kohlmeyer on Mar 6 2012, 21:34.
Merge branch 'master' into lammps-icms
5b051c4d3d36
·Axel Kohlmeyer on Mar 6 2012, 21:21.

Mar 5 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7904 f3b2605a-c512-4ea7…
5dbd664a202c
·sjplimp on Mar 5 2012, 16:29.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7903 f3b2605a-c512-4ea7…
377cd52b2e98
·sjplimp on Mar 5 2012, 16:28.
compile with debug info included for now.
20705064a58a
·Axel Kohlmeyer on Mar 5 2012, 03:26.

Mar 4 2012

small tweaks to integrate colvars smoothly.
6b9a2193df21
·Axel Kohlmeyer on Mar 4 2012, 02:31.

Mar 3 2012

added a README file for the library build
8c984ee8b1e3
·Axel Kohlmeyer on Mar 3 2012, 23:14.
use proper library name
d62c9cb15ae7
·Axel Kohlmeyer on Mar 3 2012, 22:56.
fix obvious bug
93b0efd9f2bc
·Axel Kohlmeyer on Mar 3 2012, 22:56.
added build infrastructure for lammps
4af964d452f0
·Axel Kohlmeyer on Mar 3 2012, 22:48.
initial import of colvars code from svn archive
53c98c2b6301
·Axel Kohlmeyer on Mar 3 2012, 22:31.
Merge branch 'master' into lammps-icms
47e2a3a5fc45
·Axel Kohlmeyer on Mar 3 2012, 19:25.

Mar 2 2012

bugfixes from christian for USER-CUDA
cb8a8c962544
·Axel Kohlmeyer on Mar 2 2012, 22:43.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7885 f3b2605a-c512-4ea7…
d30ba2d7eb64
·sjplimp on Mar 2 2012, 16:57.
Merge branch 'master' into lammps-icms
172f6724d9df
·Axel Kohlmeyer on Mar 2 2012, 16:00.

Mar 1 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7876 f3b2605a-c512-4ea7…
1a7a009098a2
·sjplimp on Mar 1 2012, 18:02.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7875 f3b2605a-c512-4ea7…
c74d2c7e08f2
·sjplimp on Mar 1 2012, 18:01.

Feb 2 2012

Merge branch 'master' into lammps-icms
6214cf294416
·Axel Kohlmeyer on Feb 2 2012, 15:13.

Feb 1 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7644 f3b2605a-c512-4ea7…
2c42373bc8d0
·sjplimp on Feb 1 2012, 17:07.

Jan 31 2012

Merge branch 'master' into lammps-icms
783142ff2e17
·Axel Kohlmeyer on Jan 31 2012, 14:38.
adjust makefile default settings
53449d437525
·Axel Kohlmeyer on Jan 31 2012, 03:07.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7618 f3b2605a-c512-4ea7…
32dba78215df
·sjplimp on Jan 31 2012, 01:55.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7616 f3b2605a-c512-4ea7…
8149b411038d
·sjplimp on Jan 31 2012, 01:40.

Jan 30 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7607 f3b2605a-c512-4ea7…
0e1c7f13a1da
·sjplimp on Jan 30 2012, 23:53.

Jan 27 2012

Merge branch 'master' into lammps-icms
aa13dbbe66bc
·Axel Kohlmeyer on Jan 27 2012, 16:19.
embed path to shared gpu library
65ac3b2dec52
·Axel Kohlmeyer on Jan 27 2012, 16:18.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7588 f3b2605a-c512-4ea7…
cd50fe777370
·sjplimp on Jan 27 2012, 01:41.

Jan 26 2012

Merge branch 'master' into lammps-icms
00c4af42a482
·Axel Kohlmeyer on Jan 26 2012, 20:57.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7586 f3b2605a-c512-4ea7…
a91b67d8154c
·sjplimp on Jan 26 2012, 18:55.

Jan 25 2012

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7581 f3b2605a-c512-4ea7…
2aaf4f6d7e96
·sjplimp on Jan 25 2012, 22:22.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7575 f3b2605a-c512-4ea7…
6b1774dc2052
·sjplimp on Jan 25 2012, 16:31.
correct OpenCL makefile
483d9fc5b570
·Axel Kohlmeyer on Jan 25 2012, 03:40.

Jan 24 2012

Merge branch 'lammps-lal' into lammps-icms-lal
86b6a0044923
·Axel Kohlmeyer on Jan 24 2012, 01:37.

Jan 23 2012

Added a header needed to compile with Cray cce.
a7e57915f70c
·W. Michael Brown on Jan 23 2012, 23:49.
Moving the order of bool variables in lal_table to match constructor assignment.
5da8da06ab12
·W. Michael Brown on Jan 23 2012, 19:22.
Merge branch 'master' of https://bitbucket.org/wb8/lal
acca720c4288
·W. Michael Brown on Jan 23 2012, 17:45.
Made separate kernels for different table styles, removed inline functions
038497434662
·Nguyen on Jan 23 2012, 16:48.

Jan 22 2012

Merge ssh://lens.ccs.ornl.gov/~/git/lammps
be352c7ff761
·W. Michael Brown on Jan 22 2012, 02:52.
Merge branch 'master' of http://git.icms.temple.edu/lammps-ro
6946fb516f1b
·Mike Brown on Jan 22 2012, 02:49.
Merge ssh://lens.ccs.ornl.gov/~/git/lammps
10ce8fa895e8
·W. Michael Brown on Jan 22 2012, 00:38.

Jan 21 2012

- Updated geryon lib for Apple OpenCL - Fixed typos in Nvidia.makefile and…
274c3d38c4d7
·Nguyen on Jan 21 2012, 04:20.

Jan 20 2012

Fixing issue with OpenCL. Unused memory pointers that are arguments to kernels…
13c2da0546df
·W. Michael Brown on Jan 20 2012, 19:01.

Jan 19 2012

Code formatting and added log file for table with bitmap for regression tests.
4b0e911573fd
·W. Michael Brown on Jan 19 2012, 22:15.
Fixed bugs with bitmap table/gpu
dd62b23a1742
·Trung Nguyen on Jan 19 2012, 05:57.

lammps/libefficient_neuronetdb1e17197fcfc1b5dc4c472…

Aug 15 2012

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lammps/lib
efficient_neuronetdb1e17197fcfc1b5dc4c472…