Diffusion lammps (efficient_neuronet) History

lammps/src
efficient_neuronetaf85b837036b13e51287bf3…

May 13 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
8d4a991b75ac
·Axel Kohlmeyer on May 13 2014, 12:21.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11973 f3b2605a-c512-4ea7…
d543c0199ee3
·sjplimp on May 13 2014, 00:29.

May 12 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11970 f3b2605a-c512-4ea7…
1b5905bcbc11
·sjplimp on May 12 2014, 17:08.

May 10 2014

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
24fb679e5579
·Axel Kohlmeyer on May 10 2014, 23:15.

May 9 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11968 f3b2605a-c512-4ea7…
fd1b9f2c5c32
·sjplimp on May 9 2014, 19:31.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11965 f3b2605a-c512-4ea7…
3d16253e133a
·sjplimp on May 9 2014, 18:45.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11954 f3b2605a-c512-4ea7…
153de89ab331
·sjplimp on May 9 2014, 17:33.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11953 f3b2605a-c512-4ea7…
a93cebcc2d06
·sjplimp on May 9 2014, 17:33.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11952 f3b2605a-c512-4ea7…
425fad8f71a8
·sjplimp on May 9 2014, 17:27.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
f449ea4eaafc
·Axel Kohlmeyer on May 9 2014, 13:22.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11947 f3b2605a-c512-4ea7…
f22c160cd965
·sjplimp on May 9 2014, 01:15.

May 8 2014

big dead code cleanup of comb3 pair style
55365522a988
·Axel Kohlmeyer on May 8 2014, 21:08.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11946 f3b2605a-c512-4ea7…
de0c8d1f141f
·sjplimp on May 8 2014, 16:51.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
4acacd8e3b18
·Axel Kohlmeyer on May 8 2014, 14:49.

May 7 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11945 f3b2605a-c512-4ea7…
cf0cd2e912ad
·sjplimp on May 7 2014, 22:54.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11944 f3b2605a-c512-4ea7…
4d9cdc874670
·sjplimp on May 7 2014, 21:29.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11943 f3b2605a-c512-4ea7…
8c0de891d7fd
·sjplimp on May 7 2014, 20:12.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11940 f3b2605a-c512-4ea7…
c3a29a758563
·sjplimp on May 7 2014, 18:33.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11939 f3b2605a-c512-4ea7…
320d269f42b5
·sjplimp on May 7 2014, 18:30.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11938 f3b2605a-c512-4ea7…
59971d161674
·sjplimp on May 7 2014, 18:25.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11937 f3b2605a-c512-4ea7…
4c9bba90f109
·sjplimp on May 7 2014, 18:15.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11935 f3b2605a-c512-4ea7…
53db68362ec1
·sjplimp on May 7 2014, 16:30.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
fc62bdc5cb96
·Axel Kohlmeyer on May 7 2014, 12:50.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11932 f3b2605a-c512-4ea7…
4d097d288da0
·sjplimp on May 7 2014, 01:00.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11929 f3b2605a-c512-4ea7…
9a9fd0f4011f
·sjplimp on May 7 2014, 00:49.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11928 f3b2605a-c512-4ea7…
ee16e52c9cd6
·sjplimp on May 7 2014, 00:48.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11927 f3b2605a-c512-4ea7…
f351d8316ad1
·sjplimp on May 7 2014, 00:39.

May 6 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11922 f3b2605a-c512-4ea7…
f314f75d2d6a
·sjplimp on May 6 2014, 23:16.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11921 f3b2605a-c512-4ea7…
650f5ef4f87e
·sjplimp on May 6 2014, 23:16.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11920 f3b2605a-c512-4ea7…
aa6458d35cbc
·sjplimp on May 6 2014, 23:10.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11918 f3b2605a-c512-4ea7…
7785c987035d
·sjplimp on May 6 2014, 19:37.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11917 f3b2605a-c512-4ea7…
7cdef3fd61f6
·sjplimp on May 6 2014, 19:19.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11916 f3b2605a-c512-4ea7…
91ad77986ee7
·sjplimp on May 6 2014, 18:23.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11913 f3b2605a-c512-4ea7…
55a23e57daf2
·sjplimp on May 6 2014, 17:15.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11912 f3b2605a-c512-4ea7…
d353f8b729e9
·sjplimp on May 6 2014, 17:13.

May 4 2014

systematic function based dead code removal for USER-REAXC
c3ddaa55bf33
·Axel Kohlmeyer on May 4 2014, 17:15.

May 3 2014

a few more fixins for unused variables
c77775f4b17f
·Axel Kohlmeyer on May 3 2014, 15:33.
Merge branch 'lammps-icms' of bitbucket.org:akohlmey/lammps-icms into lammps…
d906ce46d6fd
·Axel Kohlmeyer on May 3 2014, 15:17.
more USER-REAXC removal of dead code
d9e63ae63f18
·Axel Kohlmeyer on May 3 2014, 15:17.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
4fbf7105d6be
·Axel Kohlmeyer on May 3 2014, 14:13.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11909 f3b2605a-c512-4ea7…
d147665906ec
·sjplimp on May 3 2014, 00:26.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11908 f3b2605a-c512-4ea7…
3b7123bec2a2
·sjplimp on May 3 2014, 00:15.

May 2 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11907 f3b2605a-c512-4ea7…
8bee4ef5966a
·sjplimp on May 2 2014, 23:49.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11905 f3b2605a-c512-4ea7…
5e0c91dc3e81
·sjplimp on May 2 2014, 23:45.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11904 f3b2605a-c512-4ea7…
ddcab1268e97
·sjplimp on May 2 2014, 23:38.
add missing package dependencies
85742667dc10
·Axel Kohlmeyer on May 2 2014, 22:24.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11894 f3b2605a-c512-4ea7…
6cef8f16c412
·sjplimp on May 2 2014, 19:33.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11892 f3b2605a-c512-4ea7…
45f7542271fa
·sjplimp on May 2 2014, 18:36.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11889 f3b2605a-c512-4ea7…
9db54ceb9888
·sjplimp on May 2 2014, 17:57.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11888 f3b2605a-c512-4ea7…
48b8860e4391
·sjplimp on May 2 2014, 17:56.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11887 f3b2605a-c512-4ea7…
fd5b627cf03b
·sjplimp on May 2 2014, 17:49.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11883 f3b2605a-c512-4ea7…
a2ed39ad0c2c
·sjplimp on May 2 2014, 17:06.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11882 f3b2605a-c512-4ea7…
54633e6252d0
·sjplimp on May 2 2014, 17:06.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11881 f3b2605a-c512-4ea7…
8e760279f741
·sjplimp on May 2 2014, 17:04.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11880 f3b2605a-c512-4ea7…
c1eedcacfd98
·sjplimp on May 2 2014, 17:03.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11879 f3b2605a-c512-4ea7…
eddd7b148fe5
·sjplimp on May 2 2014, 16:55.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11878 f3b2605a-c512-4ea7…
9130641820c5
·sjplimp on May 2 2014, 16:47.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11877 f3b2605a-c512-4ea7…
a643d5695ea2
·sjplimp on May 2 2014, 16:37.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11876 f3b2605a-c512-4ea7…
a1c6c99ccc74
·sjplimp on May 2 2014, 16:29.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11875 f3b2605a-c512-4ea7…
af5d91115f4b
·sjplimp on May 2 2014, 16:28.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
873c7104016c
·Axel Kohlmeyer on May 2 2014, 12:17.

May 1 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11874 f3b2605a-c512-4ea7…
c8fce1f52552
·sjplimp on May 1 2014, 23:10.
make it compatible to using modules
e33e0f2723b6
·Axel Kohlmeyer on May 1 2014, 23:10.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11871 f3b2605a-c512-4ea7…
7c8c468fbb37
·sjplimp on May 1 2014, 19:55.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11870 f3b2605a-c512-4ea7…
b672dd16dbc9
·sjplimp on May 1 2014, 19:53.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11869 f3b2605a-c512-4ea7…
4f43e3f854a3
·sjplimp on May 1 2014, 19:44.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11861 f3b2605a-c512-4ea7…
f22af06e0296
·sjplimp on May 1 2014, 16:21.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11860 f3b2605a-c512-4ea7…
191c90e48e24
·sjplimp on May 1 2014, 16:18.
get rid of unused code and simplify the import of tagint
fbf51ea32333
·Axel Kohlmeyer on May 1 2014, 14:38.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
3a24287f4d94
·Axel Kohlmeyer on May 1 2014, 14:24.
remove ifdef'd out code from USER-REAXC
440cabf71769
·Axel Kohlmeyer on May 1 2014, 14:19.

Apr 30 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11857 f3b2605a-c512-4ea7…
b8b34bd6a8a6
·sjplimp on Apr 30 2014, 22:59.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11855 f3b2605a-c512-4ea7…
3efa520d075b
·sjplimp on Apr 30 2014, 22:51.
fix problems flagged by compiler warnings
0e4643fc5925
·Axel Kohlmeyer on Apr 30 2014, 22:21.
remove unneeded initialization
00a640610204
·Axel Kohlmeyer on Apr 30 2014, 20:37.
take out dead code from reax/c
21e4e0b84673
·Axel Kohlmeyer on Apr 30 2014, 20:37.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11854 f3b2605a-c512-4ea7…
1f8353a93dc4
·sjplimp on Apr 30 2014, 19:41.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11851 f3b2605a-c512-4ea7…
7b0cb07757a9
·sjplimp on Apr 30 2014, 18:33.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11850 f3b2605a-c512-4ea7…
d861edf8ceb4
·sjplimp on Apr 30 2014, 18:29.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11849 f3b2605a-c512-4ea7…
1e40c52c97c8
·sjplimp on Apr 30 2014, 17:17.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11848 f3b2605a-c512-4ea7…
4c051e92e6f0
·sjplimp on Apr 30 2014, 17:17.
next batch of code cleanup based on compiler warnings
0fbda306f930
·Axel Kohlmeyer on Apr 30 2014, 14:08.
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
104376fcbafb
·Axel Kohlmeyer on Apr 30 2014, 12:43.
avoid resource leak in fix gcmc
8d658106160d
·Axel Kohlmeyer on Apr 30 2014, 12:31.
dstyle needs to be initialized before calling options
b7ed808593a4
·Axel Kohlmeyer on Apr 30 2014, 12:28.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11844 f3b2605a-c512-4ea7…
4f6dcceebfdb
·sjplimp on Apr 30 2014, 01:26.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11843 f3b2605a-c512-4ea7…
a9ccfa94bf20
·sjplimp on Apr 30 2014, 01:25.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11841 f3b2605a-c512-4ea7…
f3e58c8d0aa7
·sjplimp on Apr 30 2014, 00:43.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11837 f3b2605a-c512-4ea7…
9c889c3f34c9
·sjplimp on Apr 30 2014, 00:21.

Apr 29 2014

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11836 f3b2605a-c512-4ea7…
08ff12cc4986
·sjplimp on Apr 29 2014, 23:30.
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11835 f3b2605a-c512-4ea7…
838fbc7cdca5
·sjplimp on Apr 29 2014, 22:21.
make code compile, although not yet functional
2117a184bde8
·Axel Kohlmeyer on Apr 29 2014, 21:01.
another round of removing unused variables
e6c72491430d
·Axel Kohlmeyer on Apr 29 2014, 19:01.

Apr 26 2014

allow using template as hybrid style with fix shake
8c4fbe0d9ff8
·Axel Kohlmeyer on Apr 26 2014, 09:53.
possible bugfix for using fix shake with atom_style template
f65a2f37ad81
·Axel Kohlmeyer on Apr 26 2014, 04:06.

Apr 24 2014

give access to eta and mtchain via Fix::extract()
70f86bf3b68f
·Axel Kohlmeyer on Apr 24 2014, 23:46.
do not write out number of bonds and related for atom style template
09fcfe4c2f1e
·Axel Kohlmeyer on Apr 24 2014, 17:36.
documentation update for USER-FEP
15a10573509b
·Axel Kohlmeyer on Apr 24 2014, 03:51.
add Pair::extract() targets to several pair styles for FEP calculations
c198ad904c26
·Axel Kohlmeyer on Apr 24 2014, 02:13.

Apr 23 2014

add comments for which packages need to be installed
08d3f1c41589
·Axel Kohlmeyer on Apr 23 2014, 13:33.