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BLASTN 2.2.31+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: /home/aline/spe_repository_aa/project/class_diagram/Test_files/test_
input/References
5 sequences; 7,399 total letters
Query= M01312_138_000000000-AN8YW_1_1102_26606_9417
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
GU320664 527 4e-153
> GU320664
Length=1488
Score = 527 bits (285), Expect = 4e-153
Identities = 299/306 (98%), Gaps = 0/306 (0%)
Strand=Plus/Minus
Query 1 CTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACCGATCATC 60
|||||||||||||||||||||||||||| ||||| |||||||| || |||||| || ||
Sbjct 333 CTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTC 274
Query 61 GCCTTGGTGAGCCATTACCTCACCAACTAGCTGATAGGCCGCGAGTCCATCCCAGACCGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GCCTTGGTGAGCCATTACCTCACCAACTAGCTGATAGGCCGCGAGTCCATCCCAGACCGA 214
Query 121 AAAACTTTCCAGACGGTAGAGATGCCTCTCCGTCTCGTATCCGGTATTAGCAGCTGTTTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 AAAACTTTCCAGACGGTAGAGATGCCTCTCCGTCTCGTATCCGGTATTAGCAGCTGTTTC 154
Query 181 CAACTGTTATCCCAGAGTCTGGGGCAGGTTGCTCACGTGTTACTCACCCGTTCGCCACTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 CAACTGTTATCCCAGAGTCTGGGGCAGGTTGCTCACGTGTTACTCACCCGTTCGCCACTG 94
Query 241 ATCAGAGGAGCAAGCTCCTCGTCACCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 ATCAGAGGAGCAAGCTCCTCGTCACCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCG 34
Query 301 TTCGTC 306
||||||
Sbjct 33 TTCGTC 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 2140068
Query= M01312_138_000000000-AN8YW_1_2114_7665_11757
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
GU320664 494 4e-143
> GU320664
Length=1488
Score = 494 bits (267), Expect = 4e-143
Identities = 293/306 (96%), Gaps = 0/306 (0%)
Strand=Plus/Minus
Query 1 CTGGGCCGTGTCTCAGTCCCAGTGTGGCGGATCATCCTCTCAGACCCGCTACGGATCGTC 60
|||||||||||||||||||||||||||| | || |||||||| || ||||| |||||
Sbjct 333 CTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTC 274
Query 61 GCCTTGGTAGGCCTTTACCCCACCAACTAGCTGATAGGCCGCGAGTCCATCCCAGACCGA 120
|||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GCCTTGGTGAGCCATTACCTCACCAACTAGCTGATAGGCCGCGAGTCCATCCCAGACCGA 214
Query 121 AAAACTTTCCAGACGGTAGAGATGCCTCTCCGTCTCGTATCCGGTATTAGCAGCTGTTTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 AAAACTTTCCAGACGGTAGAGATGCCTCTCCGTCTCGTATCCGGTATTAGCAGCTGTTTC 154
Query 181 CAACTGTTATCCCAGAGTCTGGGGCAGGTTGCTCACGTGTTACTCACCCGTTCGCCACTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 CAACTGTTATCCCAGAGTCTGGGGCAGGTTGCTCACGTGTTACTCACCCGTTCGCCACTG 94
Query 241 ATCAGAGGAGCAAGCTCCTCGTCACCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 ATCAGAGGAGCAAGCTCCTCGTCACCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCG 34
Query 301 TTCGTC 306
||||||
Sbjct 33 TTCGTC 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 2140068
Query= M01312_138_000000000-AN8YW_1_2113_7693_10856
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
DQ676995 477 4e-138
> DQ676995
Length=1498
Score = 477 bits (258), Expect = 4e-138
Identities = 290/306 (95%), Gaps = 0/306 (0%)
Strand=Plus/Minus
Query 1 CTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTC 60
||||||||| |||||||||||||||||| | || |||||||| || ||||| |||||
Sbjct 337 CTGGGCCGTATCTCAGTCCCAGTGTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTC 278
Query 61 GCCTTGGTGAGCCACTACCTCACCAACAAGCTGATAGGCCGCGAGCCCATCCTTGACCGT 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GCCTTGGTGAGCCGTTACCTCACCAACAAGCTGATAGGCCGCGAGCCCATCCTTGACCGT 218
Query 121 CGGGGCTTTCCACCTCCGCAGATGCCTGCAGAGGTCGTATCCGGTATTAGCAGCTGTTTC 180
||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 217 CGGAGCTTTCCACCTCTGCAGATGCCTGCGGAGGTCGTATCCGGTATTAGCAGCTGTTTC 158
Query 181 GAACTGTTATCCCGGAGTCAAGGGTAGGTTGCTCACGTGTTACTCACCCGTTCGCCACTG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 CAACTGTTATCCCGGAGTCAAGGGTAGGTTGCTCACGTGTTACTCACCCGTTCGCCACTG 98
Query 241 ATCAGAGGAGCAAGCTCCTCGTCACCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 ATCAGAGGAGCAAGCTCCTCGTCACCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCG 38
Query 301 TTCGTC 306
||||||
Sbjct 37 TTCGTC 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 2140068
Query= M01312_138_000000000-AN8YW_1_2113_19255_11014
Length=304
Score E
Sequences producing significant alignments: (Bits) Value
DQ676995 464 3e-134
> DQ676995
Length=1498
Score = 464 bits (251), Expect = 3e-134
Identities = 287/304 (94%), Gaps = 4/304 (1%)
Strand=Plus/Minus
Query 1 CTGGGCCGTATCTCAGTCCCAGTGTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CTGGGCCGTATCTCAGTCCCAGTGTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTC 278
Query 61 GCCTTGGTGAGCCACTACCTCACCAACAAGCTGATAGGCCGCGAGCCCATCCTTGACCGT 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GCCTTGGTGAGCCGTTACCTCACCAACAAGCTGATAGGCCGCGAGCCCATCCTTGACCGT 218
Query 121 CGGGGCTTTCCACCTCCGCAGATGCCTGCAGAGGTCGTATCCGGTATTAGCAGCTGTTTC 180
||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 217 CGGAGCTTTCCACCTCTGCAGATGCCTGCGGAGGTCGTATCCGGTATTAGCAGCTGTTTC 158
Query 181 CAACTGTTATCCCGGAGTCAAGGGTAGGTTGCTCACGTGTTACTCACCCGTTCGCCACTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 CAACTGTTATCCCGGAGTCAAGGGTAGGTTGCTCACGTGTTACTCACCCGTTCGCCACTG 98
Query 241 ATCAGCACCCG-AAGGTC-T-GTTACCGTTCGACTTGCATGTCTTAAGCATACCGCCAGC 297
||||| | | ||| || | || |||||||||||||||||| ||||||| ||||||||
Sbjct 97 ATCAG-AGGAGCAAGCTCCTCGTCACCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGC 39
Query 298 GTTC 301
||||
Sbjct 38 GTTC 35
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 2125410
Database: /home/aline/spe_repository_aa/project/class_diagram/Test_files/test_
input/References
Posted date: Jan 23, 2017 4:19 PM
Number of letters in database: 7,399
Number of sequences in database: 5
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5
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