Diffusion MedCo Deployment (riccardo) History

History
riccardoe5699564587f935deb5fc77…

Oct 31 2017

trust model changed
e5699564587f
·mickmis on Oct 31 2017, 16:56.
keys another attempt
cd66ef9eaef8
·mickmis on Oct 31 2017, 13:55.
shrine version key
69efaba652b2
·mickmis on Oct 31 2017, 11:29.
shrine test case into account
03af0852a113
·mickmis on Oct 31 2017, 11:04.
add shrine test query support
b191a8b1bb29
·mickmis on Oct 31 2017, 10:37.

Oct 30 2017

fix conf
46d3ec3407a0
·mickmis on Oct 30 2017, 23:07.
cosmetic changes
4e0da3e4d0e7
·mickmis on Oct 30 2017, 22:30.
Revert "shrine configuration modifications"
0ae11f3decf3
·mickmis on Oct 30 2017, 22:25.
Revert "shrine configuration modifications"
c7e5cce9ddff
·mickmis on Oct 30 2017, 22:25.
shrine configuration modifications
7d3483df347b
·mickmis on Oct 30 2017, 22:00.
shrine configuration modifications
7dc1adc723c7
·mickmis on Oct 30 2017, 21:48.
attempt at fix
312372be9345
·mickmis on Oct 30 2017, 21:23.
attempt at fix
35461f95b9a9
·mickmis on Oct 30 2017, 20:34.
attempt at fix
9ea36ee94c82
·mickmis on Oct 30 2017, 19:28.
attempt at fix
01c859e91145
·mickmis on Oct 30 2017, 19:08.
temporary fix for niccolo
ed89c02e5f82
·mickmis on Oct 30 2017, 16:56.
temporary fix for niccolo
02d12da1c0fd
·mickmis on Oct 30 2017, 16:53.
add keystores
aa1d6895fbb8
·mickmis on Oct 30 2017, 16:29.
fix forgotten keystore path modfiication
50f3cf0dbc12
·mickmis on Oct 30 2017, 16:27.
fix forgotten keystore path modfiication
b25826a7294c
·mickmis on Oct 30 2017, 16:24.
fix forgotten keystore path modfiication
4d725b2ab5cb
·mickmis on Oct 30 2017, 16:18.
shrine: modify keys to have different keystores per nodes -- different way +…
54bd6a63c00c
·mickmis on Oct 30 2017, 16:13.
shrine docker: optimize caching
0be40d91b825
·mickmis on Oct 30 2017, 15:58.
shrine: modify keys to have different keystores per nodes
5428ea3a35c3
·mickmis on Oct 30 2017, 15:57.
fix another configuration ommited
a0a757a838cb
·mickmis on Oct 30 2017, 15:05.
fix new topic url in webclient
0c2ed21f2356
·mickmis on Oct 30 2017, 14:38.
added shrine users configuration
26a273c1444a
·mickmis on Oct 30 2017, 14:01.
update i2b2 database: pm data now manually loaded to have full medco data
b86d0b772911
·mickmis on Oct 30 2017, 10:54.

Oct 27 2017

disable steward in shrine configuration
233762ead402
·mickmis on Oct 27 2017, 16:21.
fix shrine server configuration
f3cdbdb3efbe
·mickmis on Oct 27 2017, 16:09.
Merge branch 'shrineintegration' of ssh://c4science.ch/source/medco-deployment…
2ee9781c2bf4
·mickmis on Oct 27 2017, 14:55.
add mandatory undocumented configuration aliasMap to shrine
192f390c67ca
·mickmis on Oct 27 2017, 14:54.
add mandatory undocumented configuration aliasMap to shrine
79fa4ba672af
·mickmis on Oct 27 2017, 11:32.
update shrine configuration (trust model>peer to peer)
8a4b6f3ca331
·mickmis on Oct 27 2017, 11:05.
fix shrine-server config file
5b86bafb133f
·mickmis on Oct 27 2017, 10:05.
fix database structure
087ea777418e
·mickmis on Oct 27 2017, 09:45.

Oct 26 2017

update shrine-database dockerfile
812ceefb27ec
·mickmis on Oct 26 2017, 18:17.
remove shrine-server patches, modify shrine sources instead
82e25c7a9b84
·mickmis on Oct 26 2017, 17:36.
fix ddl file with changed name
94312fe277a4
·mickmis on Oct 26 2017, 16:22.
fix shrine database init script
ba8c5b3daf8c
·mickmis on Oct 26 2017, 16:06.
fix shrine database initialization script
8be2faa271bd
·mickmis on Oct 26 2017, 15:34.
fix shrine dockerfile: configuration setup
a6bd063ca359
·mickmis on Oct 26 2017, 14:09.
fix variables syntax in config file
aaf3228b5a45
·mickmis on Oct 26 2017, 13:53.
docker compose profiles and configuration updates for shrine (only dev-3nodes…
b0261409dc47
·mickmis on Oct 26 2017, 10:14.
updates to docker definitions of i2b2 server, database, unlynx
9ab2d08b3a79
·mickmis on Oct 26 2017, 10:12.
docker definitions of shrine database and server
582fcee9a832
·mickmis on Oct 26 2017, 10:10.

Sep 22 2017

100x and 1000x experiments ; PL/pgSQL script to duplicate data
dee810945ff7
·mickmis on Sep 22 2017, 09:37.

Sep 21 2017

update adresses in key files
eda1591ca27e
·mickmis on Sep 21 2017, 11:25.

Sep 20 2017

experiments network traffic
82641c019d6f
·mickmis on Sep 20 2017, 19:15.
add genopri2017 experiments results: all 6, 9, loading
62ce15dae441
·mickmis on Sep 20 2017, 17:28.
update keys for new iccluster servers
f631d6f03fa3
·mickmis on Sep 20 2017, 17:26.
add genopri2017 experiments results: all 3 nodes, 10 nodes, loading
bddee97b21aa
·mickmis on Sep 20 2017, 15:22.
add compose profiles and keys for exp-{6|9|10}nodes-icclusters
a36b88d16ef5
·mickmis on Sep 20 2017, 10:31.

Sep 19 2017

add data x2, x4 profiles for experiments
50a9f49fd01b
·mickmis on Sep 19 2017, 15:03.
unlynx configuration experiment with new servers
a568b58f5017
·mickmis on Sep 19 2017, 09:58.

Sep 15 2017

unlynx debug level = 1
ac4003f0bc3b
·mickmis on Sep 15 2017, 13:42.
onet cothority: fix too big packet error
df319d938ace
·mickmis on Sep 15 2017, 13:40.
unlynx server debug lvl control
76e4c9c5d676
·mickmis on Sep 15 2017, 13:20.
enable unlynx debug
531e0884bafc
·mickmis on Sep 15 2017, 13:11.
fix shrine modifications of i2b2 db
95bd245e19f4
·mickmis on Sep 15 2017, 11:22.
add shrine modifications of i2b2 db
c87da17f2743
·mickmis on Sep 15 2017, 11:16.
add exp-3nodes-icclusters datax1 compose profile
b98a03a7b59b
·mickmis on Sep 15 2017, 10:54.
make log levels controlable with docker build arguments
11ade3f0af1a
·mickmis on Sep 15 2017, 10:49.
deprecate old configurations
39d472317a4d
·mickmis on Sep 15 2017, 10:47.
remove unlynx binary
c7b35fbdd605
·mickmis on Sep 15 2017, 10:46.
axis2 log lvl to info; add unlynx debug lvl control
937a1b255433
·mickmis on Sep 15 2017, 10:21.

Sep 13 2017

i2b2 docker: control axis2 debug level ; unlynx docker: add pre-downloaded…
45bde28f28b0
·mickmis on Sep 13 2017, 09:39.

Sep 12 2017

docker compose dev: i2b2-servers join the cothority network
ccae0fd77656
·mickmis on Sep 12 2017, 16:18.
bug fix: entrypoint idx dockerfile build argument
edbfc84f7e0a
·mickmis on Sep 12 2017, 14:17.

Sep 11 2017

add temporary medco-i2b2 deployment for dev by niccolo
0b061b2a2b71
·mickmis on Sep 11 2017, 18:29.
unlynx dockerfile: add parameter for ddt secrets through environment variable
24a6031261f9
·mickmis on Sep 11 2017, 17:36.
bug fix: rename binary of unlynx client
70f3c68cc926
·mickmis on Sep 11 2017, 14:36.
remove unlynx binary and add it to the gitignore (regenerated at each run)
8268a994d86c
·mickmis on Sep 11 2017, 13:33.
update gitignore for mac ds_store
3fc7c1a7234e
·mickmis on Sep 11 2017, 11:40.
remove ds_store
9275d706e10f
·mickmis on Sep 11 2017, 11:39.
Merge branch 'master' of ssh://c4science.ch/source/medco-deployment
fcdfa9b01d24
·mickmis on Sep 11 2017, 11:37.
add genomic_annotations table in the shrine ontology schema
26953f403717
·mickmis on Sep 11 2017, 11:37.

Sep 5 2017

Some minor changes
9a6367c61836
·JoaoAndreSa on Sep 5 2017, 12:01.
Merged changes
a4f24f650527
·JoaoAndreSa on Sep 5 2017, 09:57.
Updated the branch in the dockerfile
1f3db49d5d3e
·JoaoAndreSa on Sep 5 2017, 09:55.

Sep 4 2017

add automatic export at runtime of medco binary
ffd706d9c134
·mickmis on Sep 4 2017, 16:00.
modifications to DB schemas for medco normal
0a0b24958666
·mickmis on Sep 4 2017, 15:59.

Aug 11 2017

deprecate some SQL in the structure modifications
8ac4288a7fa0
·mickmis on Aug 11 2017, 17:10.
sql example set: formatting + description modifications
87f153252069
·mickmis on Aug 11 2017, 16:59.
modifications DB structure + example SQL statements: rename some schemes code…
962ee5abe5a4
·mickmis on Aug 11 2017, 16:54.

Aug 10 2017

add set of example sql statement for loading, includingg documentation
9b2463797daa
·mickmis on Aug 10 2017, 18:26.
modifications for full i2b2 db integration
eaa7c483632e
·mickmis on Aug 10 2017, 18:24.
phppgadmin: enable pg_dump for exports
84172b70f59c
·mickmis on Aug 10 2017, 18:19.

Aug 9 2017

dockerfiles: updated repos, optimized arguments and environment declarations…
73fb87f20e87
·mickmis on Aug 9 2017, 10:41.
docker-compose common configuration + development deployment functional again
8db647e13c46
·mickmis on Aug 9 2017, 10:40.

Aug 7 2017

remove big files added by mistake
64a0ab526df2
·mickmis on Aug 7 2017, 12:36.
initial commit: deployment of medco plus, no shrine
48a29c4647d2
·mickmis on Aug 7 2017, 12:28.

Historyriccardoe5699564587f935deb5fc77…

Oct 31 2017

Oct 30 2017

Oct 27 2017

Oct 26 2017

Sep 22 2017

Sep 21 2017

Sep 20 2017

Sep 19 2017

Sep 15 2017

Sep 13 2017

Sep 12 2017

Sep 11 2017

Sep 5 2017

Sep 4 2017

Aug 11 2017

Aug 10 2017

Aug 9 2017

Aug 7 2017

History
riccardoe5699564587f935deb5fc77…