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msm/INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_muscle_wrapping.m
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MAIN_INITIALISATION_build_data_muscle_wrapping.m
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function MWDATA = MAIN_INITIALISATION_build_data_muscle_wrapping(BLDATA)
% Function to initialise the muscle wrapping data set
%--------------------------------------------------------------------------
% Syntax :
% MWDATA = MAIN_INITIALISATION_build_data_muscle_wrapping(BLDATA)
%--------------------------------------------------------------------------
%{
File Description:
This file builds the muscle data structure (MWDATA) for all the muscles.
MWDATA consists of the below data for each muscle. Here we have 42 muscles.
origin, insertion, and two types of viapoints (A and B) for each muscle
Three different points for each of these 4 points are considered.
It's based on the splines idea for the muscle centroid line.
The data are assigned using two different
functions developed in the end of this script. They are named GetPoints
and GetWrap which both read the data already saved in a file named
AnatomicLandmarks.dat.
---> MWDATA{Mident,1}.AnchorOrigin = cell(1,3);
---> MWDATA{Mident,1}.AnchorViaA = cell(1,3);
---> MWDATA{Mident,1}.AnchorViaB = cell(1,3);
---> MWDATA{Mident,1}.AnchorInsertion = cell(1,3);
NOTE all the above information are in AMIRA reference frame. They are
transformed to MATLAB and more specifically to their associated
refrence frames in matlab, using two functions named
Rotate_Axis_Into_Matlab_Frame and Rotate_Point_Into_Matlab_Fram.
These two are defined in the end of the current script.
by default, one segment is considered for all the 42 muscles which I
guess is large enough. This is set by giving the middle point (1,2) of the
above four data to the below, let's say, actual origin, insertion, and
via points data. Once the number of segments are changed by the user
then these actuals are not anymore the middle points saved in the
Anchors and instead they are defined using the spilne. The spline method can
be also set and is saved in MWDATA (below in this script).
---> MWDATA{Mident,1}.Origin = cell(1,20);
---> MWDATA{Mident,1}.ViaA = cell(1,20);
---> MWDATA{Mident,1}.ViaB = cell(1,20);
---> MWDATA{Mident,1}.Insertion = cell(1,20);
in order to rotate the data currectly and also for later on (in force
calculation and wrapping) we define the reference frames for all the
information associated with the muscle and the obstacles.
---> MWDATA{Mident,1}.MSCInfo.OriginRef = [];
---> MWDATA{Mident,1}.MSCInfo.ViaARef = [];
---> MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
---> MWDATA{Mident,1}.MSCInfo.InsertionRef = [];
---> MWDATA{Mident,1}.MSCInfo.ObjectCentre = [];
---> MWDATA{Mident,1}.MSCInfo.ObjectRef = [];
the obstacle is also defined here for each muscle among the available
shapes stated in the Obstacle Set Method of Garner (sphere, single,
double, stub). The obstacle axis (z) is also in AMIRA in terms of the
axis-angle rotation vector.
---> MWDATA{Mident,1}.MSCInfo.ObjectRadii = [];
---> MWDATA{Mident,1}.MSCInfo.ObjectType = [];
---> MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [];
%}
%--------------------------------------------------------------------------
% Initialise the output
MWDATA = cell(42,1);
% List of Physical Cross-Sectional Areas (page 197-198 of Garner's thesis)
PCSA0 = 1.e-4*[...
4.36; % Subclavius
8.12; % Serratus Anterior Upper
4; % Serratus Anterior Middle
8.41; % Serratus Anterior Lower
6.24; % Trapezius C1 - C6
3.61; % Trapezius C7
3.45; % Trapezius T1
12.4; % Trapezius T2 - T7
3.78; % Levator Scapulae
6.71; % Rhomboid Minor
4.14; % Rhomboid Major T1 - T2
2.48; % Rhomboid Major T3 - T4
4.87; % Pectoralis Minor
10.38; % Pectoralis Major Clavicular
14.68; % Pectoralis Major Sternal
11.14; % Pectoralis Major Ribs
5.26; % Latisimuss Dorsi Thoracic
5.26; % Latisimuss Dorsi Lumbar
3.8; % Latisimuss Dorsi Iliac
8.41; % Deltoid Clavicular
56.38; % Deltoid Acromial
17.19; % Deltoid Scapular
20.84; % Supraspinatus
33.32; % Infraspinatus
35.69; % Subscapularis
6.77; % Teres Minor
15.69; % Teres Major
4.55; % Coracobrachialis
19.07; % Triceps Brachii Long...RECENTLY ADDED
18.78; % Triceps Brachii Medial
38.45; % Triceps Brachii Lateral
13.99; % Biceps Brachii Short
11.91; % Biceps Brachii Long
25.88; % Brachialis
3.08; % Brachioradialis
5.65; % Supinator
17.96; % Pronator Teres
11.16; % Flexor Carpi Radialis
16.99; % Flexor Carpi Ulnaris
8.13; % Extensor Carpi Radialis Long
16.76; % Extensor Carpi Radialis Brevis
8.04]; % Extensor Carpi Ulnaris
% Maximum force values
Fmax0 = [...
144.02; % Subclavius
268.05; % Serratus Anterior Upper
132.12; % Serratus Anterior Middle
277.51; % Serratus Anterior Lower
205.95; % Trapezius C1 - C6
119.25; % Trapezius C7
114.01; % Trapezius T1
409.23; % Trapezius T2 - T7
124.78; % Levator Scapulae
221.51; % Rhomboid Minor
136.48; % Rhomboid Major T1 - T2
81.93; % Rhomboid Major T3 - T4
160.55; % Pectoralis Minor
342.46; % Pectoralis Major Clavicular
484.35; % Pectoralis Major Sternal
367.78; % Pectoralis Major Ribs
173.43; % Latisimuss Dorsi Thoracic
173.88; % Latisimuss Dorsi Lumbar
125.52; % Latisimuss Dorsi Iliac
277.48; % Deltoid Clavicular
1860.52; % Deltoid Acromial
567.15; % Deltoid Scapular
687.84; % Supraspinatus
1099.61; % Infraspinatus
1177.93; % Subscapularis
223.35; % Teres Minor
514.51; % Teres Major
150.05; % Coracobrachialis
629.21; % Triceps Brachii Long...RECENTLY ADDED
619.67; % Triceps Brachii Medial
1268.87; % Triceps Brachii Lateral
461.76; % Biceps Brachii Short
392.91; % Biceps Brachii Long
853.90; % Brachialis
101.58; % Brachioradialis
186.38; % Supinator
592.80; % Pronator Teres
368.41; % Flexor Carpi Radialis
560.70; % Flexor Carpi Ulnaris
268.42; % Extensor Carpi Radialis Long
553.21; % Extensor Carpi Radialis Brevis
265.27]; % Extensor Carpi Ulnaris
% Run through all the Muscles
for Mident = 1:42
MWDATA{Mident,1}.Name = {};
MWDATA{Mident,1}.AnchorOrigin = cell(1,3);
MWDATA{Mident,1}.AnchorViaA = cell(1,3);
MWDATA{Mident,1}.AnchorViaB = cell(1,3);
MWDATA{Mident,1}.AnchorInsertion = cell(1,3);
MWDATA{Mident,1}.Origin = cell(1,20);
MWDATA{Mident,1}.ViaA = cell(1,20);
MWDATA{Mident,1}.ViaB = cell(1,20);
MWDATA{Mident,1}.Insertion = cell(1,20);
MWDATA{Mident,1}.MSCInfo.OriginRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.InsertionRef = [];
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [];
MWDATA{Mident,1}.MSCInfo.ObjectType = [];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [];
MWDATA{Mident,1}.MSCInfo.ObjectRef = [];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [];
% This data is initially common to all
MWDATA{Mident,1}.MSCInfo.Visualise = 'off';
MWDATA{Mident,1}.MSCInfo.ObjectVisualise = 'off';
MWDATA{Mident,1}.MSCInfo.InterpType = '3rd Order';
MWDATA{Mident,1}.MSCInfo.NbSegments = 1;
% The radii
MWDATA{Mident,1}.MSCInfo.ObjectRadiiscale = 1;
% There are 12 points on the wrapping surface
MWDATA{Mident,1}.MSCInfo.NbPlotPoints = 12;
% This parameter is incase the muscle' object radiius requires
% modification. This factor is only used in the visualisation of the
% muscle's object.
MWDATA{Mident,1}.MSCInfo.ObjectRadiicorrection = 1;
% This will be defined once the muscle model is completely defined
%MWDATA{Mident,1}.OptimalFiberLength = zeros(1,20);[]
%----------------------------------------------------------------------
% SUBCLAVIUS
%----------------------------------------------------------------------
if Mident == 1
% name
MWDATA{Mident,1}.Name = {'Subclavius'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Subclavius',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Subclavius',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 1;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [];
MWDATA{Mident,1}.MSCInfo.ObjectType = 'none';
MWDATA{Mident,1}.MSCInfo.ObjectRef = [];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [0; 0; 1];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% SERRATUS ANTERIOR SUPERIOR PART
%----------------------------------------------------------------------
elseif Mident == 2
% name
MWDATA{Mident,1}.Name = {'Serratus Anterior Superior'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_SerratusAnter_Sup',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_SerratusAnter_Sup',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_SerratusAnterior_Sup','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single'; % single cylinder
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
%GetWrap('Wrap_SerratusAnterior_Sup','axis')
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = GetWrap('Wrap_SerratusAnterior_Sup','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_SerratusAnterior_Sup','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% SERRATUS ANTERIOR MIDDLE PART
%----------------------------------------------------------------------
elseif Mident == 3
% name
MWDATA{Mident,1}.Name = {'Serratus Anterior Middle'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_SerratusAnter_Mid',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_SerratusAnter_Mid',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_SerratusAnterior_Mid','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = GetWrap('Wrap_SerratusAnterior_Mid','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_SerratusAnterior_Mid','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% SERRATUS ANTERIOR INFERIOR PART
%----------------------------------------------------------------------
elseif Mident == 4
% name
MWDATA{Mident,1}.Name = {'Serratus Anterior Inferior'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_SerratusAnter_Inf',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_SerratusAnter_Inf',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_SerratusAnterior_Inf','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = GetWrap('Wrap_SerratusAnterior_Inf','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_SerratusAnterior_Inf','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% TRAPEZIUS C1 - C6
%----------------------------------------------------------------------
elseif Mident == 5
% name
MWDATA{Mident,1}.Name = {'Trapezius C1'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Trapezius1_desc',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Trapezius1_desc',3);
MWDATA{Mident,1}.AnchorInsertion{1,1} = MWDATA{Mident,1}.AnchorInsertion{1,1} + [0; -7; 0];%right away modification on the insertion points (all the three)
MWDATA{Mident,1}.AnchorInsertion{1,2} = MWDATA{Mident,1}.AnchorInsertion{1,2} + [0; -7; 0];
MWDATA{Mident,1}.AnchorInsertion{1,3} = MWDATA{Mident,1}.AnchorInsertion{1,3} + [0; -7; 0];
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 1;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Trapezius1','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = GetWrap('Wrap_Trapezius1','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_Trapezius1','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
% MWDATA{Mident,1}.MSCInfo.InsertionRef = 1;
% MWDATA{Mident,1}.MSCInfo.ObjectCentre = [GetWrap('Wrap_Trapezius1','center'),GetWrap('Wrap_Trapezius11','center')];
% MWDATA{Mident,1}.MSCInfo.ObjectType = 'double';
% MWDATA{Mident,1}.MSCInfo.ObjectRef = [0, 1];
% MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [GetWrap('Wrap_Trapezius1','axis'), GetWrap('Wrap_Trapezius11','axis')];
% MWDATA{Mident,1}.MSCInfo.ObjectRadii = [GetWrap('Wrap_Trapezius1','radius'), -GetWrap('Wrap_Trapezius11','radius')];
% MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% MWDATA{Mident,1}.MSCInfo.ViaARef = [];
%MWDATA{Mident,1}.MSCInfo.ObjectZaxis(:,1) = MWDATA{Mident,1}.MSCInfo.ObjectZaxis(:,1) + [0; 0; 1.5];
%MWDATA{Mident,1}.MSCInfo.ObjectZaxis(3,1) = -MWDATA{Mident,1}.MSCInfo.ObjectZaxis(3,1);
%MWDATA{Mident,1}.MSCInfo.ObjectCentre(:,1) = MWDATA{Mident,1}.MSCInfo.ObjectCentre(:,1)+[30; 0; 0];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% TRAPEZIUS C7
%----------------------------------------------------------------------
elseif Mident == 6
% name
MWDATA{Mident,1}.Name = {'Trapezius C7'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Trapezius2_trans1',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Trapezius2_trans1',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Trapezius2','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_Trapezius2','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_Trapezius2','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% TRAPEZIUS T1
%----------------------------------------------------------------------
elseif Mident == 7
% name
MWDATA{Mident,1}.Name = {'Trapezius T1'};
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Trapezius3_trans2',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Trapezius3_trans2',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Trapezius3','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_Trapezius3','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_Trapezius3','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% TRAPEZIUS T2 - T7
%----------------------------------------------------------------------
elseif Mident == 8
% name
MWDATA{Mident,1}.Name = {'Trapezius T2 - T7'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Trapezius4_ascen',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Trapezius4_ascen',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Trapezius4','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_Trapezius4','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_Trapezius4','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% LEVATOR SCAPULAE
%----------------------------------------------------------------------
elseif Mident == 9
% name
MWDATA{Mident,1}.Name = {'Levator Scapulae'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_LevatorScapula',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_LevatorScapula',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [];
MWDATA{Mident,1}.MSCInfo.ObjectType = 'none';
MWDATA{Mident,1}.MSCInfo.ObjectRef = [];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [0; 0; 1];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% RHOMBOID MINOR
%----------------------------------------------------------------------
elseif Mident == 10
% name
MWDATA{Mident,1}.Name = {'Rhomboid Minor'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_RhomboidMinor',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_RhomboidMinor',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [];
MWDATA{Mident,1}.MSCInfo.ObjectType = 'none';
MWDATA{Mident,1}.MSCInfo.ObjectRef = [];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [0; 0; 1];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% RHOMBOID MAJOR T1 - T2
%----------------------------------------------------------------------
elseif Mident == 11
% name
MWDATA{Mident,1}.Name = {'Rhomboid Major T1 - T2'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_RhomboidMajor1',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_RhomboidMajor1',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_RhomboidMajor1','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_RhomboidMajor1','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_RhomboidMajor1','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% RHOMBOID MAJOR T3 - T4
%----------------------------------------------------------------------
elseif Mident == 12
% name
MWDATA{Mident,1}.Name = {'Rhomboid Major T3 - T4'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_RhomboidMajor2',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_RhomboidMajor2',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_RhomboidMajor2','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_RhomboidMajor2','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_RhomboidMajor2','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% PECTORALIS MINOR
%----------------------------------------------------------------------
elseif Mident == 13
% name
MWDATA{Mident,1}.Name = {'Pectoralis Minor'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_PectoralisMinor',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_PectoralisMinor',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [];
MWDATA{Mident,1}.MSCInfo.ObjectType = 'none';
MWDATA{Mident,1}.MSCInfo.ObjectRef = [];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [0; 0; 1];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% PECTORALIS MAJOR CLAVICULAR
%----------------------------------------------------------------------
elseif Mident == 14
% name
MWDATA{Mident,1}.Name = {'Pectoralis Major Clavicular'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_PectoralisMajorC',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_PectoralisMajorC',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 1;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_PectoralisMajorC','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = GetWrap('Wrap_PectoralisMajorC','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_PectoralisMajorC','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% PECTORALIS MAJOR STERNAL
%----------------------------------------------------------------------
elseif Mident == 15
% name
MWDATA{Mident,1}.Name = {'Pectoralis Major Sternal'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_PectoralisMajorT1',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_PectoralisMajorT1',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_PectoralisMajorT1','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_PectoralisMajorT1','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_PectoralisMajorT1','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% PECTORALIS MAJOR RIBS
%----------------------------------------------------------------------
elseif Mident == 16
% name
MWDATA{Mident,1}.Name = {'Pectoralis Major Ribs'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_PectoralisMajorT2',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_PectoralisMajorT2',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_PectoralisMajorT2','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 0;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_PectoralisMajorT2','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_PectoralisMajorT2','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% LATISSIMUS DORSI THORACIC
%----------------------------------------------------------------------
elseif Mident == 17
% name
MWDATA{Mident,1}.Name = {'Latissimus Dorsi Thoracic'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_LatissimusDorsiT',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_LatissimusDorsiT',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [GetWrap('Wrap_LatissimusDorsiT1','center'),GetWrap('Wrap_LatissimusDorsiT2','center')];
MWDATA{Mident,1}.MSCInfo.ObjectType = 'double';
MWDATA{Mident,1}.MSCInfo.ObjectRef = [0 , 3];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [GetWrap('Wrap_LatissimusDorsiT1','axis'),GetWrap('Wrap_LatissimusDorsiT2','axis')];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [GetWrap('Wrap_LatissimusDorsiT1','radius'),GetWrap('Wrap_LatissimusDorsiT2','radius')];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% LATISSIMUS DORSI LUMBAR
%----------------------------------------------------------------------
elseif Mident == 18
% name
MWDATA{Mident,1}.Name = {'Latissimus Dorsi Lumbar'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_LatissimusDorsiL',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_LatissimusDorsiL',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [GetWrap('Wrap_LatissimusDorsiL1','center'),GetWrap('Wrap_LatissimusDorsiL2','center')];
MWDATA{Mident,1}.MSCInfo.ObjectType = 'double';
MWDATA{Mident,1}.MSCInfo.ObjectRef = [0 , 3];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [-GetWrap('Wrap_LatissimusDorsiL1','axis'),GetWrap('Wrap_LatissimusDorsiL2','axis')];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [GetWrap('Wrap_LatissimusDorsiL1','radius'),GetWrap('Wrap_LatissimusDorsiL2','radius')];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% LATISSIMUS DORSI ILLIAC
%----------------------------------------------------------------------
elseif Mident == 19
% name
MWDATA{Mident,1}.Name = {'Latissimus Dorsi Iliac'};
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_LatissimusDorsiI',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_LatissimusDorsiI',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 0;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [GetWrap('Wrap_LatissimusDorsiI1','center'),GetWrap('Wrap_LatissimusDorsiI2','center')];
MWDATA{Mident,1}.MSCInfo.ObjectType = 'double';
MWDATA{Mident,1}.MSCInfo.ObjectRef = [0 , 3];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [-GetWrap('Wrap_LatissimusDorsiI1','axis'),GetWrap('Wrap_LatissimusDorsiI2','axis')];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [GetWrap('Wrap_LatissimusDorsiI1','radius'),GetWrap('Wrap_LatissimusDorsiI2','radius')];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% DELTOID CLAVICULAR (FRONTAL)
%----------------------------------------------------------------------
elseif Mident == 20
% name
MWDATA{Mident,1}.Name = {'Deltoid Clavicular (Ant)'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Deltoid_Ant',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB = GetPoints('V_B_Deltoid_Ant',3);
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Deltoid_Ant',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 1;
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Deltoid_Ant','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = GetWrap('Wrap_Deltoid_Ant','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = -GetWrap('Wrap_Deltoid_Ant','radius');
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% DELTOID ACROMIAL (MIDDLE)
%----------------------------------------------------------------------
elseif Mident == 21
% name
MWDATA{Mident,1}.Name = {'Deltoid Acromial (Mid)'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Deltoid_Mid',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA = GetPoints('V_A_Deltoid_Mid',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB = GetPoints('V_B_Deltoid_Mid',3);
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Deltoid_Mid',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 2;
MWDATA{Mident,1}.MSCInfo.ViaARef = 2;
MWDATA{Mident,1}.MSCInfo.ViaBRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Deltoid_Mid','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'stub';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = GetWrap('Wrap_Deltoid_Mid','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_Deltoid_Mid','radius');
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% DELTOID SCAPULAR (POSTERIOR)
%----------------------------------------------------------------------
elseif Mident == 22
% name
MWDATA{Mident,1}.Name = {'Deltoid Scapular (Post)'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Deltoid_Post',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA = GetPoints('V_A_Deltoid_Post',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB = GetPoints('V_B_Deltoid_Post',3);
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Deltoid_Post',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 2;
MWDATA{Mident,1}.MSCInfo.ViaARef = 2;
MWDATA{Mident,1}.MSCInfo.ViaBRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Deltoid_Post','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'stub';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = GetWrap('Wrap_Deltoid_Post','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_Deltoid_Post','radius');
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% SUPRASPINATUS
%----------------------------------------------------------------------
elseif Mident == 23
% name
MWDATA{Mident,1}.Name = {'Supraspinatus'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Supraspinatus',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA = GetPoints('V_A_Supraspinatus',3);
% Via Points B Anchor Points for the Segment Interpolations
%MWDATA{Mident,1}.AnchorViaB = GetPoints('V_B_Supraspinatus',3);
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Supraspinatus',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 2;
MWDATA{Mident,1}.MSCInfo.ViaARef = 2;
MWDATA{Mident,1}.MSCInfo.ViaBRef = []; %it was initially 3
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Supraspinatus','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_Supraspinatus','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_Supraspinatus','radius');
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% INFRASPINATUS
%----------------------------------------------------------------------
elseif Mident == 24
% name
MWDATA{Mident,1}.Name = {'Infraspinatus'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Infraspinatus',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA = GetPoints('V_A_Infraspinatus',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Infraspinatus',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 2;
MWDATA{Mident,1}.MSCInfo.ViaARef = 2;
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Infraspinatus','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'stub';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = GetWrap('Wrap_Infraspinatus','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_Infraspinatus','radius');
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% SUBSCAPULARIS
%----------------------------------------------------------------------
elseif Mident == 25
% name
MWDATA{Mident,1}.Name = {'Subscapularis'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Subscapularis',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA = GetPoints('V_A_Subscapularis',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Subscapularis',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 2;
MWDATA{Mident,1}.MSCInfo.ViaARef = 2;
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Subscapularis','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'stub';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_Subscapularis','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_Subscapularis','radius');
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% TERES MINOR
%----------------------------------------------------------------------
elseif Mident == 26
% name
MWDATA{Mident,1}.Name = {'Teres Minor'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_TeresMinor',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA = GetPoints('V_A_TeresMinor',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_TeresMinor',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 2;
MWDATA{Mident,1}.MSCInfo.ViaARef = 2;
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_TeresMinor','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'stub';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = GetWrap('Wrap_TeresMinor','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_TeresMinor','radius');
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% TERES MAJOR
%----------------------------------------------------------------------
elseif Mident == 27
% name
MWDATA{Mident,1}.Name = {'Teres Major'};
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_TeresMajor',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_TeresMajor',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 2;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_TeresMajor','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 2;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = GetWrap('Wrap_TeresMajor','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = -GetWrap('Wrap_TeresMajor','radius');
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% CORACOBRACHIALIS
%----------------------------------------------------------------------
elseif Mident == 28
% name
MWDATA{Mident,1}.Name = {'Coracobrachialis'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Coracobrachialis',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB = GetPoints('V_B_Coracobrachialis',3);
% Insertion Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Coracobrachialis',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 2;
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [];
MWDATA{Mident,1}.MSCInfo.ObjectType = 'none';
MWDATA{Mident,1}.MSCInfo.ObjectRef = [];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [0;0;1];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
%----------------------------------------------------------------------
% TRICEPS BRACHII LONG
%----------------------------------------------------------------------
elseif Mident == 29
% name
MWDATA{Mident,1}.Name = {'Triceps Brachii Long'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_TricepsBrachiiLong',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_TricepsBrachiiLong',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 2;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 4;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [GetWrap('Wrap_TricepsBrachiiLong1','center'),GetWrap('Wrap_TricepsBrachiiLong2','center')];
MWDATA{Mident,1}.MSCInfo.ObjectType = 'double';
MWDATA{Mident,1}.MSCInfo.ObjectRef = [3 , 3];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [-GetWrap('Wrap_TricepsBrachiiLong1','axis'),GetWrap('Wrap_TricepsBrachiiLong2','axis')];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [GetWrap('Wrap_TricepsBrachiiLong1','radius'),-GetWrap('Wrap_TricepsBrachiiLong2','radius')];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% TRICEPS BRACHII MEDIAL
%----------------------------------------------------------------------
elseif Mident == 30
% name
MWDATA{Mident,1}.Name = {'Triceps Brachii Medial'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_TricepsBrachiiMedial',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_TricepsBrachiiMedial',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 4;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_TricepsBrachiiMedial','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_TricepsBrachiiMedial','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_TricepsBrachiiMedial','radius');
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% TRICEPS BRACHII LATERAL
%----------------------------------------------------------------------
elseif Mident == 31
% name
MWDATA{Mident,1}.Name = {'Triceps Brachii Lateral'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_TricepsBrachiiLateral',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA = GetPoints('V_A_TricepsBrachiiLateral',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_TricepsBrachiiLateral',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 4;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_TricepsBrachiiLateral','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_TricepsBrachiiLateral','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_TricepsBrachiiLateral','radius');
MWDATA{Mident,1}.MSCInfo.ViaARef = 3;
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% BICEPS SHORT
%----------------------------------------------------------------------
elseif Mident == 32
% name
MWDATA{Mident,1}.Name = {'Biceps Short'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_BicepsShort',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_BicepsShort',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 2;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 5;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [GetWrap('Wrap_BicepsShort1','center'),GetWrap('Wrap_BicepsShort2','center')];
MWDATA{Mident,1}.MSCInfo.ObjectType = 'double';
MWDATA{Mident,1}.MSCInfo.ObjectRef = [2,3];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [-GetWrap('Wrap_BicepsShort1','axis'),-GetWrap('Wrap_BicepsShort2','axis')];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [-GetWrap('Wrap_BicepsShort1','radius'),-GetWrap('Wrap_BicepsShort2','radius')];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% BICEPS LONG
%----------------------------------------------------------------------
elseif Mident == 33
% name
MWDATA{Mident,1}.Name = {'Biceps Long'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_BicepsLong',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_BicepsLong',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 2;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 5;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = [GetWrap('Wrap_BicepsLong1','center'),GetWrap('Wrap_BicepsLong2','center')];
MWDATA{Mident,1}.MSCInfo.ObjectType = 'double';
MWDATA{Mident,1}.MSCInfo.ObjectRef = [3,3];
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = [GetWrap('Wrap_BicepsLong1','axis'),GetWrap('Wrap_BicepsLong2','axis')];
MWDATA{Mident,1}.MSCInfo.ObjectRadii = [GetWrap('Wrap_BicepsLong1','radius'),GetWrap('Wrap_BicepsLong2','radius')];
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% BRACHIALIS
%----------------------------------------------------------------------
elseif Mident == 34
% name
MWDATA{Mident,1}.Name = {'Brachialis'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Brachialis',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA = GetPoints('V_A_Brachialis',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Brachialis',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 4;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Brachialis','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_Brachialis','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = -GetWrap('Wrap_Brachialis','radius');
MWDATA{Mident,1}.MSCInfo.ViaARef = 3;
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% BRACHIORADIALIS
%----------------------------------------------------------------------
elseif Mident == 35
% name
MWDATA{Mident,1}.Name = {'Brachioradialis'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Brachioradialis',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA = GetPoints('V_A_Brachioradialis',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Brachioradialis',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 5;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Brachioradialis','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_Brachioradialis','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_Brachioradialis','radius');
MWDATA{Mident,1}.MSCInfo.ViaARef = 3;
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% SUPINATOR
%----------------------------------------------------------------------
elseif Mident == 36
% name
MWDATA{Mident,1}.Name = {'Supinator'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_Supinator',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_Supinator',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 4;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 5;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_Supinator','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 5;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_Supinator','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_Supinator','radius');
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% PRONATOR TERES
%----------------------------------------------------------------------
elseif Mident == 37
% name
MWDATA{Mident,1}.Name = {'Pronator Teres'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_PronatorTeres',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA = GetPoints('V_A_PronatorTeres',3);
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_PronatorTeres',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 5;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_PronatorTeres','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_PronatorTeres','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = -GetWrap('Wrap_PronatorTeres','radius');
MWDATA{Mident,1}.MSCInfo.ViaARef = 3;
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% FLEXOR CARPI RADIALIS
%----------------------------------------------------------------------
elseif Mident == 38
% name
MWDATA{Mident,1}.Name = {'Flexor Carpi Radialis'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_FlexorCarpiRadialis',3);
% Via Points A Anchor Points for the Segment Interpolations
% MWDATA{Mident,1}.AnchorViaA = GetPoints('V_A_FlexorCarpiRadialis',3);
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_FlexorCarpiRadialis',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 5;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_FlexorCarpiRadialis','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3; %5 it looks stupid on 5 when the 5 (radius) supinates
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_FlexorCarpiRadialis','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_FlexorCarpiRadialis','radius');
MWDATA{Mident,1}.MSCInfo.ViaARef = [];% 5
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% FLEXOR CARPI ULNARIS
%----------------------------------------------------------------------
elseif Mident == 39
% name
MWDATA{Mident,1}.Name = {'Flexor Carpi Ulnaris'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_FlexorCarpiUlnaris',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_FlexorCarpiUlnaris',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 5;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_FlexorCarpiUlnaris','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_FlexorCarpiUlnaris','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_FlexorCarpiUlnaris','radius');
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% EXTENSOR CARPI RADIALIS LONG
%----------------------------------------------------------------------
elseif Mident == 40
% name
MWDATA{Mident,1}.Name = {'Extensor Carpi Radialis Long'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_ExtensorRadialisLong',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_ExtensorRadialisLong',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 5;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_ExtensorRadialisLong','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_ExtensorRadialisLong','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_ExtensorRadialisLong','radius');
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% EXTENSOR CARPI RADIALIS BREVIS
%----------------------------------------------------------------------
elseif Mident == 41
% name
MWDATA{Mident,1}.Name = {'Extensor Carpi Radialis Brevis'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_ExtensorRadialisBrevis',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_ExtensorRadialisBrevis',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 5;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_ExtensorRadialisBrevis','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 3;
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_ExtensorRadialisBrevis','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_ExtensorRadialisBrevis','radius');
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
%----------------------------------------------------------------------
% EXTENSOR CARPI ULNARIS
%----------------------------------------------------------------------
elseif Mident == 42
% name
MWDATA{Mident,1}.Name = {'Extensor Carpi Ulnaris'};
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorOrigin = GetPoints('O_ExtensorUlnaris',3);
% Via Points A Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaA{1,1} = [];
MWDATA{Mident,1}.AnchorViaA{1,2} = [];
MWDATA{Mident,1}.AnchorViaA{1,3} = [];
% Via Points B Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorViaB{1,1} = [];
MWDATA{Mident,1}.AnchorViaB{1,2} = [];
MWDATA{Mident,1}.AnchorViaB{1,3} = [];
% Origin Anchor Points for the Segment Interpolations
MWDATA{Mident,1}.AnchorInsertion = GetPoints('I_ExtensorUlnaris',3);
% This part of the data structure contains the muscle wrapping
% information.
MWDATA{Mident,1}.MSCInfo.OriginRef = 3;
MWDATA{Mident,1}.MSCInfo.InsertionRef = 5;
MWDATA{Mident,1}.MSCInfo.ObjectCentre = GetWrap('Wrap_ExtensorUlnaris','center');
MWDATA{Mident,1}.MSCInfo.ObjectType = 'single';
MWDATA{Mident,1}.MSCInfo.ObjectRef = 5;% 3
MWDATA{Mident,1}.MSCInfo.ObjectZaxis = -GetWrap('Wrap_ExtensorUlnaris','axis');
MWDATA{Mident,1}.MSCInfo.ObjectRadii = GetWrap('Wrap_ExtensorUlnaris','radius');
MWDATA{Mident,1}.MSCInfo.ViaARef = [];
MWDATA{Mident,1}.MSCInfo.ViaBRef = [];
% Phyiscal Cross-Sectional Area
MWDATA{Mident,1}.MSCInfo.PCSA = PCSA0(Mident, 1);
% Maximum Muscle Force
MWDATA{Mident,1}.MSCInfo.Fmax = Fmax0(Mident, 1);
% Save original wraping object radius for sensitivity study
MWDATA{Mident,1}.MSCInfo.ObjectRadiiOrg = MWDATA{Mident,1}.MSCInfo.ObjectRadii;
end
%--------------------------------------------------------------------------
% ROTATE ALL POINTS INTO MATLAB FRAME
%--------------------------------------------------------------------------
% All the anchor points must be rotated into their associated frames.
for i = 1:3
% Rotate the Origin points
MWDATA{Mident,1}.AnchorOrigin{1,i} =...
Rotate_Point_Into_Matlab_Frame(MWDATA{Mident,1}.AnchorOrigin{1,i}, BLDATA, MWDATA{Mident,1}.MSCInfo.OriginRef);
% Rotate the insertion points
MWDATA{Mident,1}.AnchorInsertion{1,i} =...
Rotate_Point_Into_Matlab_Frame(MWDATA{Mident,1}.AnchorInsertion{1,i}, BLDATA, MWDATA{Mident,1}.MSCInfo.InsertionRef);
% If they exist, rotate the via points A
if isempty(MWDATA{Mident,1}.AnchorViaA{1,1}) == 0
MWDATA{Mident,1}.AnchorViaA{1,i} =...
Rotate_Point_Into_Matlab_Frame(MWDATA{Mident,1}.AnchorViaA{1,i}, BLDATA, MWDATA{Mident,1}.MSCInfo.ViaARef);
else
end
% If they exist, rotate the via points B
if isempty(MWDATA{Mident,1}.AnchorViaB{1,1}) == 0
MWDATA{Mident,1}.AnchorViaB{1,i} =...
Rotate_Point_Into_Matlab_Frame(MWDATA{Mident,1}.AnchorViaB{1,i}, BLDATA, MWDATA{Mident,1}.MSCInfo.ViaBRef);
else
end
end
% The strucutre initially uses a single segment. There is
% a predefined space for up to 20 segments.
MWDATA{Mident,1}.Insertion{1,1} = MWDATA{Mident,1}.AnchorInsertion{1,2};
MWDATA{Mident,1}.ViaA{1,1} = MWDATA{Mident,1}.AnchorViaA{1,2};
MWDATA{Mident,1}.ViaB{1,1} = MWDATA{Mident,1}.AnchorViaB{1,2};
MWDATA{Mident,1}.Origin{1,1} = MWDATA{Mident,1}.AnchorOrigin{1,2};
%--------------------------------------------------------------------------
% ROTATE THE WRAPPING OBJECT
%--------------------------------------------------------------------------
% The muscle has wrapping and the object must be rotated into
% the correct local bone frame.
if isempty(MWDATA{Mident,1}.MSCInfo.ObjectCentre) == 0
% rotate object centre
for idx = 1:size(MWDATA{Mident,1}.MSCInfo.ObjectRef,2)%we use the idx for the case of double cylinder when we have to objects with obviously two different centers
MWDATA{Mident,1}.MSCInfo.ObjectCentre(:,idx) =...
Rotate_Point_Into_Matlab_Frame(MWDATA{Mident,1}.MSCInfo.ObjectCentre(:,idx), BLDATA, MWDATA{Mident,1}.MSCInfo.ObjectRef(1,idx));
end
% rotate object axis
for idx = 1:size(MWDATA{Mident,1}.MSCInfo.ObjectRef,2)
MWDATA{Mident,1}.MSCInfo.ObjectZaxis(:,idx) =...
Rotate_Axis_Into_Matlab_Frame(MWDATA{Mident,1}.MSCInfo.ObjectZaxis(:,idx), BLDATA, MWDATA{Mident,1}.MSCInfo.ObjectRef(1,idx));
end
else
% The muscle has no wrapping
end
end
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% END OF PRIMARY SCRIPT
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
return;
% All the points in AnatomicLandmarks are given in the AMIRA frame.
% All points must be transformed into their associated MATLAB reference frames in the intial configuration.
function P = Rotate_Point_Into_Matlab_Frame(Q, BLDATA, frameId)
% Initialise the output
P = [];
% Transform points. The original data is used because once the location in
% the local frame is defined, it remains independently of the current
% configuration. (Rigid Body Hypothesis)
if frameId == 0
P = BLDATA.Amira_to_MATLAB.Rt*(Q - BLDATA.Amira_to_MATLAB.IJ);
elseif frameId == 1
P = BLDATA.Original_Matrices_L2A.Rc'*(BLDATA.Amira_to_MATLAB.Rt*(Q - BLDATA.Amira_to_MATLAB.IJ) - BLDATA.Original_Points.SC);
elseif frameId == 2
P = BLDATA.Original_Matrices_L2A.Rs'*(BLDATA.Amira_to_MATLAB.Rt*(Q - BLDATA.Amira_to_MATLAB.IJ) - BLDATA.Original_Points.AA);
elseif frameId == 3
P = BLDATA.Original_Matrices_L2A.Rh'*(BLDATA.Amira_to_MATLAB.Rt*(Q - BLDATA.Amira_to_MATLAB.IJ) - BLDATA.Original_Points.GH);
elseif frameId == 4
P = BLDATA.Original_Matrices_L2A.Ru'*(BLDATA.Amira_to_MATLAB.Rt*(Q - BLDATA.Amira_to_MATLAB.IJ) - BLDATA.Original_Points.HU);
elseif frameId == 5
P = BLDATA.Original_Matrices_L2A.Rr'*(BLDATA.Amira_to_MATLAB.Rt*(Q - BLDATA.Amira_to_MATLAB.IJ) - BLDATA.Original_Points.CP);
else
% The wrong frame was provided
end
return;
function P = Rotate_Axis_Into_Matlab_Frame(Q, BLDATA, frameId)
% Initialise the output
P = [];
% Transform points. The original data is used because once the location in
% the local frame is defined, it remains independently of the current
% configuration. (Rigid Body Hypothesis)
if frameId == 0
P = BLDATA.Amira_to_MATLAB.Rt*Q;
elseif frameId == 1
P = BLDATA.Original_Matrices_L2A.Rc'*(BLDATA.Amira_to_MATLAB.Rt*Q);
elseif frameId == 2
P = BLDATA.Original_Matrices_L2A.Rs'*(BLDATA.Amira_to_MATLAB.Rt*Q);
elseif frameId == 3
P = BLDATA.Original_Matrices_L2A.Rh'*(BLDATA.Amira_to_MATLAB.Rt*Q);
elseif frameId == 4
P = BLDATA.Original_Matrices_L2A.Ru'*(BLDATA.Amira_to_MATLAB.Rt*Q);
elseif frameId == 5
P = BLDATA.Original_Matrices_L2A.Rr'*(BLDATA.Amira_to_MATLAB.Rt*Q);
else
% The wrong frame was provided
end
return;
function points = GetPoints(setname, npoints)
%
% search landmark set in specified file called setname and return the first
% npoints stored linewise.
%
% open file
fileID = fopen('MuscleLandmarks_Male01.dat');
if fileID==-1
error(' !!! INITIALISATION:GetPoints:Error: Can not open specified input file...aborting...')
end
line = fgetl(fileID);
points=cell(1,npoints);
stringfound=0;
while ischar(line)
if strcmp(line,setname)
stringfound=1;
for i=npoints:-1:1 %:npoints
line=fgetl(fileID);
% remove white spaces
line = line(~isspace(line));
% split line
line = strsplit(line,',');
% convert to double
line = str2double(line);
% save point
points{i}=line';
end
% exit loop
line = [];
else
line = fgetl(fileID);
end
end
if stringfound==0
error(' !!! INITIALISATION:GetPoints:Error: Point set %s not found in input file...aborting...',setname);
end
fclose(fileID);
return;
function info = GetWrap(setname,type)
%
% search wrapping information in specified file called setname and return
% center of wrapping object or axis or radius defined by type
%
% open file
fileID = fopen('MuscleLandmarks_Male01.dat');
if fileID==-1
error(' !!! INITIALISATION:GetWrap:Error: Can not open specified input file...aborting...')
end
line = fgetl(fileID);
stringfound=0;
while ischar(line)
if strcmp(line,setname)
stringfound=1;
if strcmp(type,'center')
% get first line
line=fgetl(fileID);
% split line
line = strsplit(line,' ');
% convert to double
info = (str2double(line))';
elseif strcmp(type,'axis')
% get second line
line=fgetl(fileID);
line=fgetl(fileID);
% split line
line = strsplit(line,' ');
% convert to double => axis given as axis-angle rotation vector for
% unit vector in z
line = str2double(line);
% convert rotation angle from radians to degrees
line(4) = line(4)*pi/180;
% compute rotation matrix
rotmat = vrrotvec2mat(line);
% get cylinder axis => initial axis is y-axis
info = rotmat*[0;1;0];
elseif strcmp(type,'radius')
% get third line
line=fgetl(fileID);
line=fgetl(fileID);
line=fgetl(fileID);
% split line
line = strsplit(line,' ');
% convert to double
line = str2double(line);
info = line(1);
end
% exit loop
line = [];
else
line = fgetl(fileID);
end
end
if stringfound==0
error(' !!! INITIALISATION:GetPoints:Error: Point set %s not found in input file...aborting...',setname);
end
fclose(fileID);
return;
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