Initial commit of MATLAB Shoulder Musculo-Skeletal Model (MSM)
74ce03b0ec87
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Authored by vmalfroy on Sep 19 2017, 13:01.

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Initial commit of MATLAB Shoulder Musculo-Skeletal Model (MSM)

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vmalfroy

Sep 19 2017, 13:01

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vmalfroy

Sep 19 2017, 13:02

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vmalfroy committed R4970:74ce03b0ec87: Initial commit of MATLAB Shoulder Musculo-Skeletal Model (MSM) (authored by vmalfroy).Sep 19 2017, 13:01

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		Path
A	(dir)	Data_Structures_and_Documentation/
A		Data_Structures_and_Documentation/BLDATA.mat
A		Data_Structures_and_Documentation/BLDATA_MOD.mat
A		Data_Structures_and_Documentation/BLDATA_VHP.mat
A		Data_Structures_and_Documentation/DYDATA.mat
A		Data_Structures_and_Documentation/DYDATA_MOD.mat
A		Data_Structures_and_Documentation/DYDATA_VHP.mat
A		Data_Structures_and_Documentation/EFDATA_140ABD_2.mat
A		Data_Structures_and_Documentation/EFDATA_140ABD_20.mat
A		Data_Structures_and_Documentation/EFDATA_MOD.mat
A		Data_Structures_and_Documentation/EFDATA_VHP.mat
A		Data_Structures_and_Documentation/JCDATA_MOD.mat
A		Data_Structures_and_Documentation/JCDATA_VHP.mat
A		Data_Structures_and_Documentation/JRDATA_MOD.mat
A		Data_Structures_and_Documentation/JRDATA_SA_2.mat
A		Data_Structures_and_Documentation/JRDATA_SA_20.mat
A		Data_Structures_and_Documentation/JRDATA_VHP.mat
A		Data_Structures_and_Documentation/KEDATA.mat
A		Data_Structures_and_Documentation/KEDATA_MOD.mat
A		Data_Structures_and_Documentation/KEDATA_VHP.mat
A		Data_Structures_and_Documentation/MADATA.mat
A		Data_Structures_and_Documentation/MADATA_MOD.mat
A		Data_Structures_and_Documentation/MADATA_VHP.mat
A		Data_Structures_and_Documentation/MEDATA.mat
A		Data_Structures_and_Documentation/MEDATA_MOD.mat
A		Data_Structures_and_Documentation/MEDATA_VHP.mat
A		Data_Structures_and_Documentation/MWDATA.mat
A		Data_Structures_and_Documentation/MWDATA_MOD.mat
A		Data_Structures_and_Documentation/MWDATA_VHP.mat
A	(dir)	Data_Structures_and_Documentation/ModM_Model/
A		Data_Structures_and_Documentation/ModM_Model/BLDATA.mat
A		Data_Structures_and_Documentation/ModM_Model/DYDATA.mat
A		Data_Structures_and_Documentation/ModM_Model/EFDATA.mat
A		Data_Structures_and_Documentation/ModM_Model/JCDATA.mat
A		Data_Structures_and_Documentation/ModM_Model/JRDATA.mat
A		Data_Structures_and_Documentation/ModM_Model/KEDATA.mat
A		Data_Structures_and_Documentation/ModM_Model/MADATA.mat
A		Data_Structures_and_Documentation/ModM_Model/MEDATA.mat
A		Data_Structures_and_Documentation/ModM_Model/MWDATA.mat
A		Data_Structures_and_Documentation/ModM_Model/REDATA.mat
A	(dir)	Data_Structures_and_Documentation/Orignal_Model/
A		Data_Structures_and_Documentation/Orignal_Model/BLDATA.mat
A		Data_Structures_and_Documentation/Orignal_Model/DYDATA.mat
A		Data_Structures_and_Documentation/Orignal_Model/EFDATA.mat
A		Data_Structures_and_Documentation/Orignal_Model/JCDATA.mat
A		Data_Structures_and_Documentation/Orignal_Model/JRDATA.mat
A		Data_Structures_and_Documentation/Orignal_Model/KEDATA.mat
A		Data_Structures_and_Documentation/Orignal_Model/MADATA.mat
A		Data_Structures_and_Documentation/Orignal_Model/MEDATA.mat
A		Data_Structures_and_Documentation/Orignal_Model/MWDATA.mat
A		Data_Structures_and_Documentation/Orignal_Model/REDATA.mat
A		Data_Structures_and_Documentation/REDATA.mat
A		Data_Structures_and_Documentation/REDATA_MOD.mat
A		Data_Structures_and_Documentation/REDATA_VHP.mat
A		Data_Structures_and_Documentation/Visualise_Data.m
A		Data_Structures_and_Documentation/forces.m
A	(dir)	INITIALISATION_Dataset/
A		INITIALISATION_Dataset/AnatomicLandmarks.dat
A		INITIALISATION_Dataset/AnatomicLandmarksold.dat
A		INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_3D_meshing.m
A		INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_bony_landmark.m
A		INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_dynamics.m
A		INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_dynamics_noequations.m
A		INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_joint_sinus_cone.m
A		INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_kinematics.m
A		INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_muscle_wrapping.m
A		INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_muscle_wrapping_new.m
A		INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_muscle_wrapping_old.m
A		INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_ribcage_ellipsoid.m
A		INITIALISATION_Dataset/MuscleLandmarks_Male01.dat
A		INITIALISATION_Dataset/MuscleLandmarks_Male011.dat
A		INITIALISATION_Dataset/MuscleLandmarks_Male_try0.dat
A		INITIALISATION_Dataset/changes_landmarks_obstacles.m
A	(dir)	LOGOS/
A		LOGOS/CHUVLogo.png
A		LOGOS/EPFLLogo.png
A		LOGOS/JointsFigure.eps
A		LOGOS/JointsFigure.png
A		LOGOS/JointsFigure2.png
A		LOGOS/LALogo.jpg
A		LOGOS/LBOLogo.png
A		LOGOS/MAINPix.png
A		LOGOS/MusclesFigure.eps
A		LOGOS/MusclesFigure.png
A		LOGOS/MusclesFigure2.eps
A		LOGOS/MusclesFigure2.png
A		MADATA.mat
A		MAIN_TOOL_geometry_functions.m
A		MAIN_TOOL_save_data.m
A		MAIN_TOOL_save_visualisation.m
A		MAIN_TOOL_script_generator.m
A		MAIN_TOOL_update_visualisation.m
A		MASTHEAD_script.m
A		MODEL_MAIN_FILE.m
A	(dir)	Measured_Kinematics/
A		Measured_Kinematics/measured_data.mat
A	(dir)	PostProcessing/
A		PostProcessing/EFDATA_CSA25.mat
A		PostProcessing/EFDATA_CSA33.mat
A		PostProcessing/EFDATA_CSA41.mat
A		PostProcessing/JRDATA_CSA25.mat
A		PostProcessing/JRDATA_CSA33.mat
A		PostProcessing/JRDATA_CSA41.mat
A		PostProcessing/KEDATA_CSA25.mat
A		PostProcessing/KEDATA_CSA33.mat
A		PostProcessing/KEDATA_CSA41.mat
A		PostProcessing/postprocessing.m
A	(dir)	TOOLBOX_Force_Estimation/
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_acceleration_file.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_constraints_file.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_dynamics_file.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_estimate_forces.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_get_dynamics.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_glenoid_cone_make.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_main_file.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_maximum_muscle_forces.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_menu_functions.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_run_optimisation.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_run_optimisation_old.m~
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_run_optimisation_try2.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_script_generator.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_view_data_script.m
A		TOOLBOX_Force_Estimation/ESTIMATION_TOOL_visualisation_script.m
A	(dir)	TOOLBOX_Initial_Configuration/
A		TOOLBOX_Initial_Configuration/INITIAL_CONFIGURATION_main_file.m
A		TOOLBOX_Initial_Configuration/INITIAL_CONFIGURATION_reset_angles.m
A		TOOLBOX_Initial_Configuration/INITIAL_CONFIGURATION_script_generator.m
A		TOOLBOX_Initial_Configuration/INITIAL_CONFIGURATION_slider_modification.m
A		TOOLBOX_Initial_Configuration/INITIAL_CONFIGURATION_update_visualisation.m
A	(dir)	TOOLBOX_Joint_Sinus_Cones/
A		TOOLBOX_Joint_Sinus_Cones/JOINT_CONE_TOOL_change_cone.m
A		TOOLBOX_Joint_Sinus_Cones/JOINT_CONE_TOOL_main_file.m
A		TOOLBOX_Joint_Sinus_Cones/JOINT_CONE_TOOL_reset_values.m
A		TOOLBOX_Joint_Sinus_Cones/JOINT_CONE_TOOL_script_generator.m
A	(dir)	TOOLBOX_Kinematics/
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_GH_Estimation.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_build_TS.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_build_motion.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_compute_kinematics.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_four_sphere_intersect.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_get_TS_intersect_coordinate.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_get_initial_values.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_intersection_identification.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_main_file.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_menu_functions.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_parameter_bounds.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_ruled_surface_parameters.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_script_generator.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_three_sphere_intersect.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_two_sphere_intersect.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_update_uicontrols.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_v_of_u.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_view_kinematics_script.m
A		TOOLBOX_Kinematics/KINEMATICS_TOOL_view_motion_script.m
A	(dir)	TOOLBOX_Moment_Arms/
A		TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_click_figure_script.m
A		TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_compute_all.m
A		TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_compute_moment_arms.m
A		TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_main_file.m
A		TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_projection_matrices.m
A		TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_script_generator.m
A	(dir)	TOOLBOX_Muscle_Geometry/
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_adjust_radius.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_build_muscle.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_compute_teta_w.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_compute_wrapping.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_cylinder_wrap.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_dcylinder_wrap.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_geometry_functions.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_main_file.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_menu_functions.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_reset_angles.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_script_generator.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_slider_modification.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_sphere_rotation_matrix.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_sphere_wrap.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_spline_build.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_stub_wrap.m
A		TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_update_visualisation.m
A	(dir)	TOOLBOX_Ribcage_Ellipsoid/
A		TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_main_file.m
A		TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_optimisation_function.m
A		TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_optimisation_setup.m
A		TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_ribcage_selection_update.m
A		TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_run_optimisation.m
A		TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_script_generator.m
A		TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_update_visualisation.m
A	(dir)	TOOLBOX_Subject_Specific/
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_Clear_WireFrame.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_Load_Kinematics.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_Overwirte_Scaling.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_Show_Glenoid_Orientation.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_Show_PCSA.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_Update_Glenoid_Orientation.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_Update_PCSA.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_Update_Weight.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_Visualization.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_build_data_bony_landmark.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_build_data_muscle_wrapping.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_main_file.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_optimisation_function.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_optimisation_setup.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_ribcage_selection_update.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_run_optimisation.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_script_generator.m
A		TOOLBOX_Subject_Specific/SUBJECT_TOOL_update_visualisation.m
A	(dir)	Visualisation_Functions/
A		Visualisation_Functions/VISUALISATION_view_bone_meshing.m
A		Visualisation_Functions/VISUALISATION_view_bone_wireframe.m
A		Visualisation_Functions/VISUALISATION_view_joint_sinus_cones.m
A		Visualisation_Functions/VISUALISATION_view_muscle_insertions.m
A		Visualisation_Functions/VISUALISATION_view_muscle_origins.m
A		Visualisation_Functions/VISUALISATION_view_muscle_segement.m
A		Visualisation_Functions/VISUALISATION_view_muscle_wrapping_object.m
A		Visualisation_Functions/VISUALISATION_view_ribcage_ellipsoid.m
A		Visualisation_Functions/checking_the_landmarks.m
A	(dir)	Visualisation_Original_Meshings/
A		Visualisation_Original_Meshings/Clavicula_Mesh0.mat
A		Visualisation_Original_Meshings/Clavicula_Mesh_2.mat
A		Visualisation_Original_Meshings/Clavicula_Meshold.mat
A		Visualisation_Original_Meshings/Hand_Mesh_Try1.mat
A		Visualisation_Original_Meshings/Hand_Mesh_Try2.mat
A		Visualisation_Original_Meshings/Humerus_Mesh0.mat
A		Visualisation_Original_Meshings/MAIN_INITIALISATION_build_data_bony_landmarkOld.m
A		Visualisation_Original_Meshings/MAIN_INITIALISATION_build_data_bony_landmark_vis.m
A		Visualisation_Original_Meshings/MESHING_check_mesh.m
A		Visualisation_Original_Meshings/MESHING_check_mesh_hand.m
A		Visualisation_Original_Meshings/MESHING_generate_mesh.m
A		Visualisation_Original_Meshings/Radius_Mesh0.mat
A		Visualisation_Original_Meshings/Radius_Mesh_Try1.mat
A		Visualisation_Original_Meshings/Radius_Mesh_Try3.mat
A		Visualisation_Original_Meshings/Radius_Mesh_Try31.mat
A		Visualisation_Original_Meshings/Radius_Mesh_Try32.mat
A		Visualisation_Original_Meshings/Radius_Mesh_Try3_old.mat
A		Visualisation_Original_Meshings/Scapula_Mesh0.mat
A		Visualisation_Original_Meshings/Thorax_Mesh0.mat
A		Visualisation_Original_Meshings/Ulna_Mesh0.mat
A		Visualisation_Original_Meshings/Ulna_Mesh_Try1.mat
A		Visualisation_Original_Meshings/Ulna_Mesh_Try3.mat
A		Visualisation_Original_Meshings/Ulna_Mesh_Try31.mat
A		Visualisation_Original_Meshings/Ulna_Mesh_Try32.mat
A		Visualisation_Original_Meshings/Ulna_Mesh_Try3_old.mat
A	(dir)	Visualisation_Prints/
A		Visualisation_Prints/Ellipsoid_Visualisation.eps
A		Visualisation_Prints/Intial_Configuration_Visualisation.eps
A		Visualisation_Prints/Joint_Sinus_Cone_Visualisation.eps
A		Visualisation_Prints/Kinematics_Visualisation.eps
A		Visualisation_Prints/Model_Visualisation.eps
A		Visualisation_Prints/Motion_Check.eps
A		Visualisation_Prints/Muscle_Visualisation.eps
A		Visualisation_Prints/Muscle_Visualisation222.eps