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msm/ShoulderModel_rTSA/TOOLBOX_Initial_Configuration/INITIAL_CONFIGURATION_main_file.m
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INITIAL_CONFIGURATION_main_file.m
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%--------------------------------------------------------------------------
%
%
% GUI FOR RUNNING THE INITIAL CONFIGURATION TOOL
%--------------------------------------------------------------------------
%
% File Description :
% This is the main file for running the initial configuration tool. The
% tool can be used to setup the initial geometric configuration of the
% bones or reset the geometry to the initial data measured from AMIRA.
%
%--------------------------------------------------------------------------
%
% File Structure :
% The GUI figure is created in IHandle. The pushbuttons are defined next,
% followed by the initialisation script. All the GUI control structures are
% contained in ICGUIHandle. The axis is called InitialVisualisationAxes.
% All the graphics are contained in a single strucure : IPlotHandles.
%
%--------------------------------------------------------------------------
%
% Contents of the Interactive GUI structure :
% PushButton Section
% ICGUIHandle.Close_Button
% ICGUIHandle.Save_Visualisation_Button
% ICGUIHandle.Reset_Button
%
% Interactive Elements
% ICGUIHandle.Title
% ICGUIHandle.Clavicula_Axial_Rotation.Title
% ICGUIHandle.Clavicula_Axial_Rotation.Slider
% ICGUIHandle.Clavicula_Axial_Rotation.Edit
% ICGUIHandle.Clavicula_Elevation_Rotation.Title
% ICGUIHandle.Clavicula_Elevation_Rotation.Slider
% ICGUIHandle.Clavicula_Elevation_Rotation.Edit
% ICGUIHandle.Clavicula_Protraction_Rotation.Title
% ICGUIHandle.Clavicula_Protraction_Rotation.Slider
% ICGUIHandle.Clavicula_Protraction_Rotation.Edit
% ICGUIHandle.Scpula_Tilt_Rotation.Title
% ICGUIHandle.Scpula_Tilt_Rotation.Slider
% ICGUIHandle.Scpula_Tilt_Rotation.Edit
% ICGUIHandle.Scapula_Elevation_Rotation.Title
% ICGUIHandle.Scapula_Elevation_Rotation.Slider
% ICGUIHandle.Scapula_Elevation_Rotation.Edit
% ICGUIHandle.Scapula_Protraction_Rotation.Title
% ICGUIHandle.Scapula_Protraction_Rotation.Slider
% ICGUIHandle.Scapula_Protraction_Rotation.Edit
% ICGUIHandle.Humerus_Axial_Rotation.Title
% ICGUIHandle.Humerus_Axial_Rotation.Slider
% ICGUIHandle.Humerus_Axial_Rotation.Edit
% ICGUIHandle.Humerus_Abduction_Rotation.Title
% ICGUIHandle.Humerus_Abduction_Rotation.Slider
% ICGUIHandle.Humerus_Abduction_Rotation.Edit
% ICGUIHandle.Humerus_Elevation_Rotation.Title
% ICGUIHandle.Humerus_Elevation_Rotation.Slider
% ICGUIHandle.Humerus_Elevation_Rotation.Edit
% ICGUIHandle.Ulna_Flexion_Rotation.Title
% ICGUIHandle.Ulna_Flexion_Rotation.Slider
% ICGUIHandle.Ulna_Flexion_Rotation.Edit
% ICGUIHandle.Radius_Pronation_Rotation.Title
% ICGUIHandle.Radius_Pronation_Rotation.Slider
% ICGUIHandle.Radius_Pronation_Rotation.Edit
%--------------------------------------------------------------------------
%
% The graphical hierarchy is :
% IHandle
% -> InitialVisualisationAxes
% -> IPlotHandles
%
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% CREATE THE FIGURE
%--------------------------------------------------------------------------
IHandle = figure(...
'color', 'white',...
'units', 'normalized',...
'position', [0.1, 0.1, 0.4, 0.8],...
'toolbar', 'figure',...
'name', 'EPFL - LBO UPPER EXTREMITY MODEL: INITIAL CONFIGURATION TOOLBOX');
% Push Button for Closing the GUI
ICGUIHandle.Close_Button = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.95, 0.35, 0.05],...
'style', 'pushbutton',...
'string', '<html> <b>- CLOSE GUI -------------------------------------------------</b><br><p style="font-size: 90%;"> <i>Closes this GUI and updates BLDATA</i></p>',...
'fontsize', 14,...
'fontweight', 'bold',...
'callback', INITIAL_CONFIGURATION_script_generator('Close Intial Tool'));
% Push Button for Closing the GUI
ICGUIHandle.Reset_Button = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.9, 0.35, 0.05],...
'style', 'pushbutton',...
'string', '<html> <b>- RESET JOINT ANGLES -----------------------------------</b><br><p style="font-size: 90%;"> <i>Resets the Joint angles to original values</i></p>',...
'fontsize', 14,...
'fontweight', 'bold',...
'callback', INITIAL_CONFIGURATION_script_generator('Reset Angles'));
% Push Button for Closing the GUI
ICGUIHandle.Save_Visualisation_Button = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.85, 0.35, 0.05],...
'style', 'pushbutton',...
'string', '<html> <b>- SAVE VISUALISATION ------------------------------------</b><br><p style="font-size: 90%;"> <i>Saves the current axis content</i></p>',...
'fontsize', 14,...
'fontweight', 'bold',...
'callback', INITIAL_CONFIGURATION_script_generator('Save Visualisation'));
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% CREATE INTERACTIVE CLAVICULA SLIDER PART
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.8, 0.35, 0.015],...
'fontsize', 14,...
'string', 'Set Initial Joint Euler Angles (DEG)',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
%--------------------------------------------------------------------------
% CLAVICULA AXIAL ROTATION
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Clavicula_Axial_Rotation.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.72, 0.25, 0.02],...
'fontsize', 12,...
'string', 'Clavicula Forward Axial Rotation',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
% Slider for changing the angles
ICGUIHandle.Clavicula_Axial_Rotation.Slider = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.71, 0.35, 0.01],...
'max', 90,...
'min', -90,...
'value', 0,...
'style', 'slider',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Slider Modified'));
% Value Indicator
ICGUIHandle.Clavicula_Axial_Rotation.Edit = uicontrol(...
'units', 'normalized',...
'position', [0.9, 0.72, 0.1, 0.04],...
'fontsize', 12,...
'string', '0',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'edit',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Value Modified'));
%--------------------------------------------------------------------------
% CLAVICULA ELEVATION / DEPRESSION
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Clavicula_Elevation_Rotation.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.66, 0.25, 0.02],...
'fontsize', 12,...
'string', 'Clavicula Elevation (-)/Depression (+)',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
% Slider for changing the angle
ICGUIHandle.Clavicula_Elevation_Rotation.Slider = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.65, 0.35, 0.01],...
'max', 90,...
'min', -90,...
'value', -31.4362,...
'style', 'slider',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Slider Modified'));
% Value Indicator
ICGUIHandle.Clavicula_Elevation_Rotation.Edit = uicontrol(...
'units', 'normalized',...
'position', [0.9, 0.66, 0.1, 0.04],...
'fontsize', 12,...
'string', '-31.4362',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'edit',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Value Modified'));
%--------------------------------------------------------------------------
% CLAVICULA PROTRACTION / RETRACTION
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Clavicula_Protraction_Rotation.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.6, 0.25, 0.02],...
'fontsize', 12,...
'string', 'Clavicula Retraction (-) / Protraction (+)',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
% Slider for changing the angle
ICGUIHandle.Clavicula_Protraction_Rotation.Slider = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.59, 0.35, 0.01],...
'max', 90,...
'min', -90,...
'value', -14.8076,...
'style', 'slider',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Slider Modified'));
% Value Indicator
ICGUIHandle.Clavicula_Protraction_Rotation.Edit = uicontrol(...
'units', 'normalized',...
'position', [0.9, 0.6, 0.1, 0.04],...
'fontsize', 12,...
'string', '-14.8076',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'edit',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Value Modified'));
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% CREATE INTERACTIVE SCAPULA SLIDER PART
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% SCAPULA SPINAL TILT ROTATION
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Scapula_Tilt_Rotation.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.54, 0.25, 0.02],...
'fontsize', 12,...
'string', 'Scapula External Tilt(-)/Internal Tilt (+)',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
% Slider for changing the angle
ICGUIHandle.Scapula_Tilt_Rotation.Slider = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.53, 0.35, 0.01],...
'max', 90,...
'min', -90,...
'value', -8.9392,...
'style', 'slider',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Slider Modified'));
% Value Indicator
ICGUIHandle.Scapula_Tilt_Rotation.Edit = uicontrol(...
'units', 'normalized',...
'position', [0.9, 0.54, 0.1, 0.04],...
'fontsize', 12,...
'string', '-8.9392',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'edit',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Value Modified'));
%--------------------------------------------------------------------------
% SCAPULA ELEVATION / DEPRESSION
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Scapula_Elevation_Rotation.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.48, 0.25, 0.02],...
'fontsize', 12,...
'string', 'Scapula Depression (-)/Elevation (+)',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
% Slider for changing the angle
ICGUIHandle.Scapula_Elevation_Rotation.Slider = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.47, 0.35, 0.01],...
'max', 90,...
'min', -90,...
'value', -4.9374,...
'style', 'slider',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Slider Modified'));
% Value Indicator
ICGUIHandle.Scapula_Elevation_Rotation.Edit = uicontrol(...
'units', 'normalized',...
'position', [0.9, 0.48, 0.1, 0.04],...
'fontsize', 12,...
'string', '-4.9374',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'edit',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Value Modified'));
%--------------------------------------------------------------------------
% SCAPULA PROTRACTION / RETRACTION
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Scapula_Protraction_Rotation.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.42, 0.25, 0.02],...
'fontsize', 12,...
'string', 'Scapula Retraction (-)/Protraction(+)',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
% Slider for changing the angle
ICGUIHandle.Scapula_Protraction_Rotation.Slider = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.41, 0.35, 0.01],...
'max', 90,...
'min', -90,...
'value', 29.2987,...
'style', 'slider',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Slider Modified'));
% Value Indicator
ICGUIHandle.Scapula_Protraction_Rotation.Edit = uicontrol(...
'units', 'normalized',...
'position', [0.9, 0.42, 0.1, 0.04],...
'fontsize', 12,...
'string', '29.2987',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'edit',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Value Modified'));
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% CREATE INTERACTIVE HUMERUS SLIDER PART
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% HUMERUS AXIAL ROTATION
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Humerus_Axial_Rotation.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.36, 0.25, 0.02],...
'fontsize', 12,...
'string', 'Humerus Axial Rotation',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
% Slider for changing the angles
ICGUIHandle.Humerus_Axial_Rotation.Slider = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.35, 0.35, 0.01],...
'max', 180,...
'min', -180,...
'value', -85.4041,...
'style', 'slider',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Slider Modified'));
% Value Indicator
ICGUIHandle.Humerus_Axial_Rotation.Edit = uicontrol(...
'units', 'normalized',...
'position', [0.9, 0.36, 0.1, 0.04],...
'fontsize', 12,...
'string', '-85.4041',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'edit',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Value Modified'));
%--------------------------------------------------------------------------
% HUMERUS ABDUCTION / ADDUCTION
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Humerus_Abduction_Rotation.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.3, 0.25, 0.02],...
'fontsize', 12,...
'string', 'Humerus Adduction (+)/Abduction (-)',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
% Slider for changing the angles
ICGUIHandle.Humerus_Abduction_Rotation.Slider = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.29, 0.35, 0.01],...
'max', 180,...
'min', -180,...
'value', 9.7591,...
'style', 'slider',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Slider Modified'));
% Value Indicator
ICGUIHandle.Humerus_Abduction_Rotation.Edit = uicontrol(...
'units', 'normalized',...
'position', [0.9, 0.3, 0.1, 0.04],...
'fontsize', 12,...
'string', '9.7591',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'edit',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Value Modified'));
%--------------------------------------------------------------------------
% HUMERUS ELEVATION PLANE
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Humerus_Elevation_Plane.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.24, 0.25, 0.02],...
'fontsize', 12,...
'string', 'Humerus Elevation Plane',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
% Slider for changing the angles
ICGUIHandle.Humerus_Elevation_Plane.Slider = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.23, 0.35, 0.01],...
'max', 180,...
'min', -180,...
'value', 129.6775,...
'style', 'slider',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Slider Modified'));
% Value Indicator & Editor
ICGUIHandle.Humerus_Elevation_Plane.Edit = uicontrol(...
'units', 'normalized',...
'position', [0.9, 0.24, 0.1, 0.04],...
'fontsize', 12,...
'string', '129.6775',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'edit',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Value Modified'));
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% CREATE INTERACTIVE FOREARM SLIDER PART
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% ULNA Extension(-)/Flexion(+)
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Ulna_Flexion_Rotation.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.18, 0.25, 0.02],...
'fontsize', 12,...
'string', 'Ulna Extension (-)/Flexion (+)',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
% Slider for changing the angles
ICGUIHandle.Ulna_Flexion_Rotation.Slider = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.17, 0.35, 0.01],...
'max', 150,...
'min', 0,...
'value', 0,...
'style', 'slider',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Slider Modified'));
% Value Indicator
ICGUIHandle.Ulna_Flexion_Rotation.Edit = uicontrol(...
'units', 'normalized',...
'position', [0.9, 0.18, 0.1, 0.04],...
'fontsize', 12,...
'string', '0',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'edit',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Value Modified'));
%--------------------------------------------------------------------------
% RADIUS Supination (-)/Pronation (+)
%--------------------------------------------------------------------------
% Title
ICGUIHandle.Radius_Pronation_Rotation.Title = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.12, 0.25, 0.02],...
'fontsize', 12,...
'string', 'Radius Supination (-)/Pronation (+)',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'text');
% Slider for changing the angles
ICGUIHandle.Radius_Pronation_Rotation.Slider = uicontrol(...
'units', 'normalized',...
'position', [0.65, 0.11, 0.35, 0.01],...
'max', 0,...
'min', -155,...
'value', 0,...
'style', 'slider',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Slider Modified'));
% Value Indicator
ICGUIHandle.Radius_Pronation_Rotation.Edit = uicontrol(...
'units', 'normalized',...
'position', [0.9, 0.12, 0.1, 0.04],...
'fontsize', 12,...
'string', '0',...
'HorizontalAlignment', 'Left',...
'backgroundcolor', 'white',...
'fontweight', 'bold',...
'style', 'edit',...
'callback', INITIAL_CONFIGURATION_script_generator('Update Joint Angles', 'Value Modified'));
% Create a Help Menu
ICGUIHandle.HelpMenu(1,1) = uimenu(IHandle,...
'label', 'GUI HELP');
ICGUIHandle.HelpMenu(2,1) = uimenu(ICGUIHandle.HelpMenu(1,1),...
'label', 'About?',...
'callback', INITIAL_CONFIGURATION_script_generator('Help'));
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% INITIALISATION SCRIPT
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
% Create the Axes
InitialVisualisationAxes = axes(...
'units', 'normalized',...
'position', [0.05, 0.05, 0.6, 0.9]);
% Set the Axis
set(IHandle, 'currentaxes', InitialVisualisationAxes); hold on;
% Create the 3-D Meshing Visualisations
IPlotHandles.MeshHandle(1) = VISUALISATION_view_bone_meshing([], MEDATA, 0, BLDATA);
IPlotHandles.MeshHandle(2) = VISUALISATION_view_bone_meshing([], MEDATA, 1, BLDATA);
IPlotHandles.MeshHandle(3) = VISUALISATION_view_bone_meshing([], MEDATA, 2, BLDATA);
IPlotHandles.MeshHandle(4) = VISUALISATION_view_bone_meshing([], MEDATA, 3, BLDATA);
IPlotHandles.MeshHandle(5) = VISUALISATION_view_bone_meshing([], MEDATA, 4, BLDATA);
IPlotHandles.MeshHandle(6) = VISUALISATION_view_bone_meshing([], MEDATA, 5, BLDATA);
IPlotHandles.MeshHandle(7) = VISUALISATION_view_bone_meshing([], MEDATA, 6, BLDATA);
% Create the 3-D Wire Frame Visualisations
IPlotHandles.WireFrameHandle(1) = VISUALISATION_view_bone_wireframe([], 0, BLDATA);
IPlotHandles.WireFrameHandle(2) = VISUALISATION_view_bone_wireframe([], 1, BLDATA);
IPlotHandles.WireFrameHandle(3) = VISUALISATION_view_bone_wireframe([], 2, BLDATA);
IPlotHandles.WireFrameHandle(4) = VISUALISATION_view_bone_wireframe([], 3, BLDATA);
IPlotHandles.WireFrameHandle(5) = VISUALISATION_view_bone_wireframe([], 4, BLDATA);
IPlotHandles.WireFrameHandle(6) = VISUALISATION_view_bone_wireframe([], 5, BLDATA);
%--------------------------------------------------------------------------
% SET THE APPEARANCE OF THE VISUALISATION
%--------------------------------------------------------------------------
% Set some lights to help visualise the model
% light('Position',[ 1, 0, 0],'Style','infinite');
% light('Position',[ 0, 0, -10],'Style','local');
% light('Position',[10, -50, 0],'Style','infinite');
% colormap copper; % Give the bone meshings a bone color.
% %box on; % Turn the axes box on. It makes is easier to keep track of the orientation.
% material dull; % Define the bone meshing material. It removes the shiny effect.
% axis equal; % Correct the apsect ratio.
% zoom(1); % Zoom in on the visualisation. otherwise it looks very small.
% view([135, 25]); % Setup the initial camera postion [0,0] is behind horizontally.
light('Position',[1 0 0],'Style','infinite');
light('Position',[0 0 -10],'Style','local');
light('Position',[10 -50 0],'Style','infinite');
colormap copper;
box on;
material dull;
%axis equal;
axis ([-100 800 -200 800 -700 600])
%zoom(1.3);
view([165, 15]);
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