Homec4science
Diffusion MSM (command_line) Browse

msm/ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_compute_wrapping.m
07fe7aaf51b9command_line

Last Change
Raw File

MUSCLE_TOOL_compute_wrapping.m
View Options

function [WRDATA] = MUSCLE_TOOL_compute_wrapping(BLDATA, MWDATA)
% UICONTROL Callback computes the muscle wrapping
%--------------------------------------------------------------------------
% Syntax :
% [WRDATA, MWDATA] = MUSCLE_TOOL_compute_wrapping(BLDATA, MWDATAin)
%--------------------------------------------------------------------------
%
% File Description :
% This function computes the muscle wrapping using the obstacle set
% methods.
%--------------------------------------------------------------------------
% Initialise the Output
WRDATA.PathPoints = [];
WRDATA.PathRefList = [];
WRDATA.PathLength = 0;
% Create the list of already known points
PointsList = [MWDATA.Origin, MWDATA.ViaA, MWDATA.ViaB, MWDATA.Insertion];
RefList = [MWDATA.OriginRef, MWDATA.ViaARef, MWDATA.ViaBRef, MWDATA.InsertionRef];
% Transform the list of points to the absolute reference frame
PointsList = MUSCLE_TOOL_geometry_functions('Rotate Points To Absolute Frame', BLDATA, MWDATA, PointsList, RefList);
% Get the Object Centre in the absolute reference frame
Object_Centre = MUSCLE_TOOL_geometry_functions('Rotate Object Centre To Absolute Frame', BLDATA, MWDATA, PointsList, RefList);
% Get the Object Rotation Matrix
Object_Rotation_Matrix = MUSCLE_TOOL_geometry_functions('Construct Object Rotation Matrix', BLDATA, MWDATA, PointsList, RefList);
%--------------------------------------------------------------------------
% The Muscle Has no Wrapping
% NO WRAPPING
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
if isequal(MWDATA.ObjectType, 'none')
% Set the list of points as the output
WRDATA.PathPoints = PointsList;
WRDATA.PathRefList = RefList;
% Compute the length
WRDATA.PathLength = 0;
for i = 1:size(PointsList,2)-1
WRDATA.PathLength = WRDATA.PathLength + norm(PointsList(:,i+1) - PointsList(:,i));
end
%--------------------------------------------------------------------------
% The Muscle has a Wrapping
% SINGLE CYLINDER WRAPPING
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
elseif isequal(MWDATA.ObjectType, 'single')
% Identify which end-points should be used
Origin = zeros(3,1);
Insertion = zeros(3,1);
OriginFlag = [];
InsertionFlag = [];
% There is no Via point A
if isempty(MWDATA.ViaA)
Origin = PointsList(:,1);
OriginFlag = [];
else
Origin = PointsList(:,2);
OriginFlag = 1;
WRDATA.PathLength = norm(PointsList(:,2) - PointsList(:,1));
end
% There is no Via point B
if isempty(MWDATA.ViaB)
Insertion = PointsList(:,end);
InsertionFlag = [];
else
Insertion = PointsList(:,end-1);
InsertionFlag = size(PointsList,2);
WRDATA.PathLength = WRDATA.PathLength + norm(PointsList(:,end) - PointsList(:,end-1));
end
% Adjust the wrapping radius
[Robj, rflag] = MUSCLE_TOOL_adjust_radius(...
Origin, Insertion, Object_Centre, MWDATA.ObjectRadii, Object_Rotation_Matrix, 'single');
% Compute the Wrapping
[PATH, Length, wflag] = MUSCLE_TOOL_cylinder_wrap(...
Origin, Insertion, Object_Centre, Robj, Object_Rotation_Matrix, MWDATA.NbPlot);
% Define the Total Muscle Length
WRDATA.PathLength = WRDATA.PathLength + Length;
% Define the Full Path
WRDATA.PathPoints = [PointsList(:,OriginFlag), PATH, PointsList(:,InsertionFlag)];
% Create the list of reference for each point
if wflag ~= 0
WRDATA.PathRefList = RefList;
else
WRDATA.PathRefList = [MWDATA.OriginRef, MWDATA.ViaARef, MWDATA.ObjectRef*ones(1,size(PATH,2)-2), MWDATA.ViaBRef, MWDATA.InsertionRef];
end
%--------------------------------------------------------------------------
% The Muscle has a Wrapping
% DOUBLE CYLINDER WRAPPING
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
elseif isequal(MWDATA.ObjectType, 'double')
Origin = zeros(3,1);
Insertion = zeros(3,1);
OriginFlag = [];
InsertionFlag = [];
% There is no Via point A
if isempty(MWDATA.ViaA)
Origin = PointsList(:,1);
OriginFlag = [];
else
Origin = PointsList(:,2);
OriginFlag = 1;
WRDATA.PathLength = norm(PointsList(:,2) - PointsList(:,1));
end
% There is no Via point B
if isempty(MWDATA.ViaB)
Insertion = PointsList(:,end);
InsertionFlag = [];
else
Insertion = PointsList(:,end-1);
InsertionFlag = size(PointsList,2);
WRDATA.PathLength = WRDATA.PathLength + norm(PointsList(:,end) - PointsList(:,end-1));
end
% Adjust the wrapping radius
[Robj, rflag] = MUSCLE_TOOL_adjust_radius(...
Origin, Insertion, Object_Centre, MWDATA.ObjectRadii, Object_Rotation_Matrix, 'double');
% Compute the Wrapping
[PATH, Length, wflag] = MUSCLE_TOOL_dcylinder_wrap(...
Origin, Insertion, Object_Centre, Robj, Object_Rotation_Matrix, MWDATA.NbPlot);
% Define the Total Muscle Length
WRDATA.PathLength = WRDATA.PathLength + Length;
% Define the Full Path
WRDATA.PathPoints = [PointsList(:,OriginFlag), PATH, PointsList(:,InsertionFlag)];
% Generate the Wrapping reference defnitions
if wflag == 4
WRDATA.PathRefList = [MWDATA.OriginRef, MWDATA.ViaARef, MWDATA.ObjectRef(1)*ones(1,MWDATA.NbPlot), MWDATA.ObjectRef(2)*ones(1,MWDATA.NbPlot), MWDATA.ViaBRef, MWDATA.InsertionRef];
elseif wflag == 3
WRDATA.PathRefList = [MWDATA.OriginRef, MWDATA.ViaARef, MWDATA.ObjectRef(2)*ones(1,size(PATH,2)-2), MWDATA.ViaBRef, MWDATA.InsertionRef];
elseif wflag == 2
WRDATA.PathRefList = [MWDATA.OriginRef, MWDATA.ViaARef, MWDATA.ObjectRef(1)*ones(1,size(PATH,2)-2), MWDATA.ViaBRef, MWDATA.InsertionRef];
elseif wflag == 1
WRDATA.PathRefList = RefList;
end
%--------------------------------------------------------------------------
% The muscle has a wrapping
% SPHERE CAPPED CYLINDER WRAPPING
%--------------------------------------------------------------------------
%--------------------------------------------------------------------------
elseif isequal(MWDATA.ObjectType, 'stub')
Origin = zeros(3,1);
Insertion = zeros(3,1);
OriginFlag = [];
InsertionFlag = [];
% There is no Via point A
if isempty(MWDATA.ViaA)
Origin = PointsList(:,1);
OriginFlag = [];
else
Origin = PointsList(:,2);
OriginFlag = 1;
WRDATA.PathLength = norm(PointsList(:,2) - PointsList(:,1));
end
% There is no Via point B
if isempty(MWDATA.ViaB)
Insertion = PointsList(:,end);
InsertionFlag = [];
else
Insertion = PointsList(:,end-1);
InsertionFlag = size(PointsList,2);
WRDATA.PathLength = WRDATA.PathLength + norm(PointsList(:,end) - PointsList(:,end-1));
end
% Adjust the wrapping radius
[Robj, rflag] = MUSCLE_TOOL_adjust_radius(...
Origin, Insertion, Object_Centre, MWDATA.ObjectRadii, Object_Rotation_Matrix, 'stub');
% Change direction? STUB wrapping must have S always with Sz > Pz.
p = Object_Rotation_Matrix'*(Origin - Object_Centre);
s = Object_Rotation_Matrix'*(Insertion - Object_Centre);
Switchflag = 0;
if p(3) > s(3)
Sv = Origin;
Origin = Insertion;
Insertion = Sv;
Switchflag = 1;
end
% Compute the Wrapping
[PATH, Length, wflag] = MUSCLE_TOOL_stub_wrap(...
Origin, Insertion, Object_Centre, Robj, Object_Rotation_Matrix, MWDATA.NbPlot, Switchflag);
% Define the Full Path
if Switchflag == 1
WRDATA.PathPoints = [PointsList(:,OriginFlag), PATH(:,end:-1:1), PointsList(:,InsertionFlag)];
else
WRDATA.PathPoints = [PointsList(:,OriginFlag), PATH, PointsList(:,InsertionFlag)];
end
% Define the Total Muscle Length
WRDATA.PathLength = WRDATA.PathLength + Length;
if size(PATH,2) > 2
WRDATA.PathRefList = [MWDATA.OriginRef, MWDATA.ViaARef, MWDATA.ObjectRef*ones(1,size(PATH,2)-2), MWDATA.ViaBRef, MWDATA.InsertionRef];
else
WRDATA.PathRefList = RefList;
end
else
end
return
c4science · Help