scATAC-seq/CMakeLists.txt
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CMakeLists.txt
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			cmake_minimum_required(VERSION 3.0.0)

			# project name and it is C++ only
			project(scATACseq CXX)


			# libraries
			## boost library
			set(BOOST_INCLUDEDIR "/usr/local/include/boost/")
			set(BOOST_LIBRARYDIR "/usr/local/lib/boost")
			find_package(Boost 1.65 COMPONENTS program_options REQUIRED)

			## UnitTest++ library
			## TODO write a FindUnitTest++.cmake file to use find_package()
			find_library(UNITTEST_LIB
			NAMES "UnitTest++"
			PATHS "/usr/local/lib/UnitTest++")
			find_path(UNITTEST_INCLUDE
			NAMES "UnitTest++.h"
			PATHS "/usr/local/include/UnitTest++/")
			include_directories(${UNITTEST_INCLUDE})
			# link_directories(${UNITTEST_LIB})

			## zlib (for seqan Bam I/O)
			find_package(ZLIB REQUIRED)

			## SeqAn
			find_package (SeqAn REQUIRED)

			## threads
			find_package(Threads REQUIRED)

			add_subdirectory(src)