Diffusion SHRINE MedCo Fork (feature/i2b2-merge-to-develop) History

History
feature/i2b2-merge-to…066b583758a587b5704458c…

Feb 5 2016

DB work for problems
066b583758a5
·David Walend on Feb 5 2016, 20:00.
Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine…
399f485282eb
·Ben Carmen on Feb 5 2016, 18:11.

Feb 4 2016

Commit of local test data.
a6db4a7b1b6a
·Ben Carmen on Feb 4 2016, 21:52.
Commit of latest JS includes (need to move static includes to ocLazyLoad)
88d3df388753
·Ben Carmen on Feb 4 2016, 21:52.
Commit of latest Dashboard JS source.
9dca7ff9402b
·Ben Carmen on Feb 4 2016, 21:51.
breakdown sql for the qep
9b6f10a68dad
·David Walend on Feb 4 2016, 21:41.
Now storing and retrieving query results with breakdowns in unit tests.
ff66a1935aee
·David Walend on Feb 4 2016, 21:06.
Merge remote-tracking branch 'origin/develop' into develop
20e6063ac1b4
·Ben Carmen on Feb 4 2016, 20:32.
Update of Dashboard Service Test to reflect changes to route.
adff832f31f6
·Ben Carmen on Feb 4 2016, 20:31.
Updated Dashboard Service to strip out nested quotes when appropriate.
41d06d0f6988
·Ben Carmen on Feb 4 2016, 20:31.
Getting a QueryResult out of the db
1ea5937a612a
·David Walend on Feb 4 2016, 20:04.
Breakdown types table
dffc299274c1
·David Walend on Feb 4 2016, 17:48.

Feb 2 2016

Another try at the network id
55d2b7bc9c78
·David Walend on Feb 2 2016, 22:18.
Think I found the network id
a9e82a82b430
·David Walend on Feb 2 2016, 21:31.
Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine…
3b54492bcfe4
·David Walend on Feb 2 2016, 21:12.
Removed some dead code, updated sql for the new table, and removed the…
c3c7d4df1d2f
·David Walend on Feb 2 2016, 21:02.
Merge remote-tracking branch 'origin/develop' into develop
9d0e19798440
·Ben Carmen on Feb 2 2016, 19:50.
Latest version of diagnostic tool
1fcf5b3f075a
·Ben Carmen on Feb 2 2016, 19:50.
Now attempting to save part of QueryResults in the DB
3a5bc041c7f5
·David Walend on Feb 2 2016, 18:40.
Matched fields in a QueryResult with fields in the database
0b4d7f6fa098
·David Walend on Feb 2 2016, 18:24.
A little extra logging to try to figure out what one of the aggregators is
ccb416e4cc48
·David Walend on Feb 2 2016, 17:20.
Start of query result tables
b809ecd7759b
·David Walend on Feb 2 2016, 16:51.

Feb 1 2016

update of dashboard.conf file for /test/ directory.
85913978a374
·Ben Carmen on Feb 1 2016, 23:59.
Update of Dashboard routing.
0dad039a6372
·Ben Carmen on Feb 1 2016, 23:58.
Correct default url for status is internalstatus
9fc96147e16e
·David Walend on Feb 1 2016, 19:54.
Deleted more PDO stuff
0b9ea42e31e7
·David Walend on Feb 1 2016, 17:26.

Jan 30 2016

update of script includes
0ced7f817fe6
·Ben Carmen on Jan 30 2016, 22:23.
Merge remote-tracking branch 'origin/develop' into develop
e68ef1d35f16
·Ben Carmen on Jan 30 2016, 22:21.
Huge refactor of dashboard
033fc768b659
·Ben Carmen on Jan 30 2016, 22:21.

Jan 29 2016

Got rid of ReadPDORequest and associated bits
73bc2b1c8e06
·David Walend on Jan 29 2016, 22:24.
Planning out the next part of local/local
064b3b77cf6a
·David Walend on Jan 29 2016, 21:23.
Some stray actor systems after the merge
fd3950857159
·David Walend on Jan 29 2016, 19:13.
Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine…
f875ded313d0
·David Walend on Jan 29 2016, 18:56.
Added some logging to see what else happens
16bf34625454
·David Walend on Jan 29 2016, 18:56.
Commit of bug fixes for query history messages: SHRINE-1292
6fff2012d501
·Ben Carmen on Jan 29 2016, 18:13.
Merge remote-tracking branch 'origin/develop' into develop
aee3ad95c7d1
·Ben Carmen on Jan 29 2016, 17:42.
Probing a bit into why the steward's actors aren't daemonic
5ae5189a064b
·David Walend on Jan 29 2016, 16:53.
Commit of the latest Dashboard Service.
ce9bac970888
·Ben Carmen on Jan 29 2016, 15:41.
Merge remote-tracking branch 'origin/develop' into develop
5d48cd0ab33d
·Ben Carmen on Jan 29 2016, 15:39.

Jan 28 2016

Another try at getting akka to run as all-daemon
3ef029060a95
·David Walend on Jan 28 2016, 22:29.
Seeing if I can get some control over akka threads and make them daemons via…
6c7bf41ae493
·David Walend on Jan 28 2016, 21:36.
Removed stray columns from previousQueries
d6a2021af428
·David Walend on Jan 28 2016, 18:32.
Added logging to try to find where the message comes in
85fb775a3a20
·David Walend on Jan 28 2016, 15:58.

Jan 27 2016

Attempting to track down what happened to the FlagQueryRequest's message
9a403f61dfab
·David Walend on Jan 27 2016, 22:36.
Attempting to track down what happened to the FlagQueryRequest's message
29407c707e89
·David Walend on Jan 27 2016, 22:34.
Should now handle flag/unflag query requests in the QEP's database
c623fa3f3116
·David Walend on Jan 27 2016, 22:02.
Some tests for flagged queries
254268658d55
·David Walend on Jan 27 2016, 21:49.
Add flagged query table and use it a little bit
54645092738b
·David Walend on Jan 27 2016, 20:52.

Jan 26 2016

Factored the JDNI/tomcat boilerplate off into its own class
5315849aa994
·David Walend on Jan 26 2016, 21:49.
todo node to check finding the right cert.
685c37db95eb
·David Walend on Jan 26 2016, 20:10.
Handling a case where the dashboard's KeyStore just has the right cert in it.
3c0dcb5f165c
·David Walend on Jan 26 2016, 19:47.
Removing the parts that the QEP uses to ask adapters for previous queries
bfad2e33d56b
·David Walend on Jan 26 2016, 18:06.
Renamed mysterious thing that is the heart of the QEP to AbstractQepService…
75b470281df5
·David Walend on Jan 26 2016, 16:45.
Renamed shrine-service to shrine-qep
4eba8153a907
·David Walend on Jan 26 2016, 16:19.
Renamed 'service' package to 'qep'
5b03b448644f
·David Walend on Jan 26 2016, 16:02.
Cleaned up dead imports from some ancient refactoring.
30dd91476f9c
·David Walend on Jan 26 2016, 15:49.
Added test for selecting by user
bfeaa8acc95a
·David Walend on Jan 26 2016, 15:42.

Jan 25 2016

Guess for the right value of queryMasterid
b3ad90ab2ed9
·David Walend on Jan 25 2016, 22:20.
Trying out reading previous queries from the db
627357bb98ce
·David Walend on Jan 25 2016, 21:40.

Jan 22 2016

Some debugs to see what's what
53d591999cb2
·David Walend on Jan 22 2016, 21:24.
Bill's recommendations for handling the previous query table
fe5b56ccf246
·David Walend on Jan 22 2016, 20:13.
Now storing queries locally in the QEP
ba61dcf294fc
·David Walend on Jan 22 2016, 17:52.

Jan 21 2016

Adding mysql.ddl for qepQueryDb. Split out the sql directory into…
4a0864cdb8b3
·David Walend on Jan 21 2016, 20:44.

Jan 20 2016

cleaned up a lot of dead sql code. SHRINE-1263
87fdce25c99e
·David Walend on Jan 20 2016, 22:26.
Moving sql scripts
69fb78df0401
·David Walend on Jan 20 2016, 22:05.
Added test for QepQueryDb, fixed a typo
adc59d4ba10b
·David Walend on Jan 20 2016, 16:57.

Jan 19 2016

Adding some slick code for the qep db
75f57ff39ec6
·David Walend on Jan 19 2016, 21:59.
Basics of the QueryInstance db table
e59e514d57f6
·David Walend on Jan 19 2016, 21:21.

Jan 15 2016

Make testing work a bit better
270675b52301
·David Walend on Jan 15 2016, 22:16.
Crap. test.com is a real domain. Changed to bogus.harvard.edu
def752429556
·David Walend on Jan 15 2016, 18:01.
Remove test of failing to talk to a missing web service
c59582c7fa5b
·David Walend on Jan 15 2016, 17:25.
Trying out trimming the url to save mischief
8dc4aedc6b15
·David Walend on Jan 15 2016, 16:45.
Cleaning up some suggestions from IDEA
03430c9da802
·David Walend on Jan 15 2016, 16:38.

Jan 14 2016

Rearranged dashboard-to-dashboard auth, got through IDEAs checks to green
42aa7426ea22
·David Walend on Jan 14 2016, 19:21.
Last of the for comprehension
bd59adccfa3c
·David Walend on Jan 14 2016, 18:59.
Added more to the for comprehension
87ff89e8081d
·David Walend on Jan 14 2016, 18:47.
Added more to the for comprehension
9579770dc231
·David Walend on Jan 14 2016, 17:48.
Added more to the for comprehension
865dfd959dbe
·David Walend on Jan 14 2016, 17:29.
Started refactoring to a for comprehension
7bf1574d5841
·David Walend on Jan 14 2016, 16:56.
Added a null check for the issuer
4f5b748e323c
·David Walend on Jan 14 2016, 16:07.
More sensible values for the jwts subject field to help refill the user object…
c2f3e5bc06fd
·David Walend on Jan 14 2016, 16:02.

Jan 13 2016

Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine…
8a37f2c00429
·Ben Carmen on Jan 13 2016, 23:52.
Commit of updated Dashboard Service and Tests
1a9eae471950
·Ben Carmen on Jan 13 2016, 23:51.
Found a bug where my http headers were being ignored
59a98d288a3d
·David Walend on Jan 13 2016, 22:42.
Comment for java code's reason to exist
852f9f302d7e
·David Walend on Jan 13 2016, 21:56.
Removed some stray printlns
c3ff50aa00b5
·David Walend on Jan 13 2016, 21:45.
Now verifying the keys that signed the jwts string
338c83b1c654
·David Walend on Jan 13 2016, 21:43.
Merge branch 'develop' of https://open.med.harvard.edu/stash/scm/shrine/shrine…
d28c5d496e24
·David Walend on Jan 13 2016, 21:42.
Remove (unused) PCORI_AdapterMappings.xml file. This should make build/test a…
474f5d939b2e
·Keith Dwyer on Jan 13 2016, 21:16.
Restored tests of dashboard-to-dashboard comms
7fc8a17aba50
·David Walend on Jan 13 2016, 20:55.
Now sending a Spray OAuth token with the request
fa62d920c198
·David Walend on Jan 13 2016, 20:28.
Switched to Bearer auth scheme, step 1
bfb561311772
·David Walend on Jan 13 2016, 19:24.
Reformatted ShrineJwtAuthenticator.scala
63d938c2d6c8
·David Walend on Jan 13 2016, 17:29.
Another try at getting the pom.xml to build just JDK 7 code
18ebe89d2a41
·David Walend on Jan 13 2016, 17:14.
Swithcing on the JDK 7 comple option. Hope that the Scala/Java compiler thing…
4761d5b7f69a
·David Walend on Jan 13 2016, 16:38.
Now using just the jwtsString, almost able to switch to Bearer authentication.
d7464de1cfe9
·David Walend on Jan 13 2016, 16:07.

Jan 12 2016

Removed some less interesting dead code
013344e6f0e3
·David Walend on Jan 12 2016, 22:09.
Now using jwt's kid field for the public part of the cert.
a41433107ccb
·David Walend on Jan 12 2016, 21:56.
Trying out an ssl client that accepts all certs
08ea31cca746
·David Walend on Jan 12 2016, 20:26.
More logging and a fix - default value for status
41ea6d99dcab
·David Walend on Jan 12 2016, 16:29.

Historyfeature/i2b2-merge-to…066b583758a587b5704458c…

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History
feature/i2b2-merge-to…066b583758a587b5704458c…