Diffusion SHRINE MedCo Fork (feature/i2b2-merge-to-develop) History

i2b2-merge-to…a384fbafb8eb02bbbac9286…

Jul 28 2016

Chagned get url, moved problems to data-commons
a384fbafb8eb
·Ty on Jul 28 2016, 20:57.

Jul 22 2016

Finally figured out how to serialize NodeSeq
50b529562967
·Ty on Jul 22 2016, 22:53.
Factored out config sources, Hopefully not too much
a5417d56f0e1
·Ty on Jul 22 2016, 19:58.
First half of code review refactoring (epoch added to Problems)
9017f31ccbad
·Ty on Jul 22 2016, 18:01.

Jun 16 2016

Testing optional parts and i2b2 of status for SHRINE-1497. Mixed in some work…
b66421c3cebf
·David Walend on Jun 16 2016, 18:59.

May 18 2016

Separated most of the QEP components from ShrineOrchestrator, and found and…
161ebb92aec0
·David Walend on May 18 2016, 18:01.

Apr 19 2016

Removed QepConfig and associated baggage for SHRINE-1041
f0cb8f1ade70
·David Walend on Apr 19 2016, 16:54.

Apr 18 2016

Moved a lot of goop from ShrineOrchestrator to…
37b9f97de0ea
·David Walend on Apr 18 2016, 20:06.

Apr 15 2016

Removed authenticationType from ShrineOrchestrator for SHRINE-1041
12e53983e2ec
·David Walend on Apr 15 2016, 22:18.
Pinned down AuthorizationType for SHRINE-1041
c5755db71746
·David Walend on Apr 15 2016, 20:44.
Dissolved a lot of AuthStrategy for SHRINE-1041
44eebba9827a
·David Walend on Apr 15 2016, 17:59.
Big cleanup of DSA authorizer for SHRINE-1041
2576f4735829
·David Walend on Apr 15 2016, 15:19.

Apr 14 2016

Untangled some of the mess around QueryEntryPointComponents for SHRINE-1041
031efefe1ec9
·David Walend on Apr 14 2016, 21:14.
Worked through mixed concerns in the hub and qep configs for SHRINE-1041
5dd2f2290838
·David Walend on Apr 14 2016, 20:23.

Apr 1 2016

breakdownResultOutputTypes for SHRINE-1041
147f98ddb2b4
·David Walend on Apr 1 2016, 21:04.

Mar 30 2016

Last of the fixes for SHRINE-1113 updated all the test code and removed the old…
963eb3d73c31
·David Walend on Mar 30 2016, 17:34.
More SHRINE-1113. Switched to new API in I2b2BroadcastResource
eee398843d7e
·David Walend on Mar 30 2016, 15:59.

Mar 22 2016

Merge branch 'release/1.21.0' into develop
39b793677701
·David Walend on Mar 22 2016, 17:10.
Missing database statements for SHRINE-1388
23c410f3c6de
·David Walend on Mar 22 2016, 17:06.

Mar 18 2016

Merge branch 'release/1.21.0' into develop
3917f1682433
·David Walend on Mar 18 2016, 21:09.
Possible fix for SHRINE-1388
f146bb0dafa6
·David Walend on Mar 18 2016, 21:08.

Mar 17 2016

Updated mssql and oracle qep audit schemas for SHRINE-1377
18ee728afe67
·David Walend on Mar 17 2016, 19:41.
Making the ResultOutputType optional. More hope for SHRINE-1377
3a20bb0b9ad2
·David Walend on Mar 17 2016, 17:46.

Mar 16 2016

Possibly a fix for SHRINE-1377 - QueryResults with ERRORs don't have result…
6c50f60966df
·David Walend on Mar 16 2016, 21:35.
Added sorting to selectPreviousQueriesByUserAndDomain() to pick most recent…
6cbb20c19235
·David Walend on Mar 16 2016, 16:34.

Mar 11 2016

Removed held field from QueryMaster.
3d57ca1786f0
·David Walend on Mar 11 2016, 20:55.

Mar 9 2016

Moved to 1.22.0-SNAPSHOT
5457844e5565
·David Walend on Mar 9 2016, 20:38.

Mar 8 2016

Added a trap for SqlExceptions coming from the QEP's database.
f769de87b136
·David Walend on Mar 8 2016, 20:39.
Added new problem response for trouble running a query in the qep
f145827ebd51
·David Walend on Mar 8 2016, 20:00.

Mar 7 2016

VARCHAR(MAX) replaces TEXT in mssql
e361f941f697
·David Walend on Mar 7 2016, 22:17.
Fixes for Oracle schema
8ba321c3dde9
·David Walend on Mar 7 2016, 20:55.
Added configurable timeout for the qep's communication with the qep db cache
f253511819a9
·David Walend on Mar 7 2016, 17:21.

Mar 4 2016

Now transferring data between databases on shrine-dev
b6f766a02ebe
·David Walend on Mar 4 2016, 17:08.

Mar 3 2016

Bulk of the code for priming the previous queries table
5648e6caae51
·David Walend on Mar 3 2016, 19:36.

Feb 29 2016

Interpretting fetchSize as an SQL limit for SHRINE-1309
b4ec1b02dc2d
·David Walend on Feb 29 2016, 18:09.
Interpretting fetchSize as an SQL limit for SHRINE-1309
d169d3654ae3
·David Walend on Feb 29 2016, 17:11.

Feb 25 2016

Removed the hack to get auth errors
d0726394537c
·David Walend on Feb 25 2016, 21:46.
Added a NotAuthenticatedProblem to report problems with authentication that…
1c3ea56d1424
·David Walend on Feb 25 2016, 21:27.
Hack to get an exception from the QEP
81211412c355
·David Walend on Feb 25 2016, 19:49.
Now authenticating everythign that happens in the QepService and…
bedefc0f6215
·David Walend on Feb 25 2016, 17:36.

Feb 23 2016

First try at oracle and msssql ddls for the new tables in the qep.
cf1ae4c6d5be
·David Walend on Feb 23 2016, 21:24.
Got rid of ResultOutputType.PATIENTSET
87af747198fb
·David Walend on Feb 23 2016, 17:14.

Feb 22 2016

Added support for configured breakdown types
9b302f58581e
·David Walend on Feb 22 2016, 22:11.
Better error message for SHRINE-1299
2bf0f425c61e
·David Walend on Feb 22 2016, 21:52.
Added logging of the response
29820016199b
·David Walend on Feb 22 2016, 21:07.

Feb 18 2016

Need to update the times to pick up the delete
ff5a1baf4ea1
·David Walend on Feb 18 2016, 21:45.
Plugging in method to delete queries
9f94c89c8868
·David Walend on Feb 18 2016, 21:22.
Support for renaming and deleting queries
3f85e99a94aa
·David Walend on Feb 18 2016, 21:04.
Renaming before using in the db code
73feda32acaa
·David Walend on Feb 18 2016, 19:49.
Now using the isDone method on StatusType to determine if queries are done
918ca8ac1b3e
·David Walend on Feb 18 2016, 17:06.

Feb 17 2016

CQRS for breakdowns and errors in query results
f0f63b4fe1f6
·David Walend on Feb 17 2016, 21:56.
Put in any updated records when new results come back from the hub.
36d887412b58
·David Walend on Feb 17 2016, 19:49.
First attempt at round-trip db cache of results in the qep, and some more cruft…
2a4852b100db
·David Walend on Feb 17 2016, 17:57.
Got rid of some unused wierdly complex code
c8676bf4a66c
·David Walend on Feb 17 2016, 17:18.

Feb 16 2016

Prep work and a bit of logging before reading query results
f28f5f8754d0
·David Walend on Feb 16 2016, 21:48.
Missed a line of db table creation code
14964e860330
·David Walend on Feb 16 2016, 20:40.

Feb 5 2016

Have to use the adapterNode as a foreign key for a response with problems. The…
fdcd7f3b1d65
·David Walend on Feb 5 2016, 20:37.
Added mysql sql to create a table for problems the qep stores as part of query…
f0d1dc55a943
·David Walend on Feb 5 2016, 20:13.
Test of storing and retrieving a result with a problem
d782e17e411e
·David Walend on Feb 5 2016, 20:09.
DB work for problems
066b583758a5
·David Walend on Feb 5 2016, 20:00.

Feb 4 2016

breakdown sql for the qep
9b6f10a68dad
·David Walend on Feb 4 2016, 21:41.
Now storing and retrieving query results with breakdowns in unit tests.
ff66a1935aee
·David Walend on Feb 4 2016, 21:06.
Getting a QueryResult out of the db
1ea5937a612a
·David Walend on Feb 4 2016, 20:04.
Breakdown types table
dffc299274c1
·David Walend on Feb 4 2016, 17:48.

Feb 2 2016

Another try at the network id
55d2b7bc9c78
·David Walend on Feb 2 2016, 22:18.
Think I found the network id
a9e82a82b430
·David Walend on Feb 2 2016, 21:31.
Removed some dead code, updated sql for the new table, and removed the…
c3c7d4df1d2f
·David Walend on Feb 2 2016, 21:02.
Now attempting to save part of QueryResults in the DB
3a5bc041c7f5
·David Walend on Feb 2 2016, 18:40.
Matched fields in a QueryResult with fields in the database
0b4d7f6fa098
·David Walend on Feb 2 2016, 18:24.
A little extra logging to try to figure out what one of the aggregators is
ccb416e4cc48
·David Walend on Feb 2 2016, 17:20.
Start of query result tables
b809ecd7759b
·David Walend on Feb 2 2016, 16:51.

Feb 1 2016

Deleted more PDO stuff
0b9ea42e31e7
·David Walend on Feb 1 2016, 17:26.

Jan 29 2016

Got rid of ReadPDORequest and associated bits
73bc2b1c8e06
·David Walend on Jan 29 2016, 22:24.
Planning out the next part of local/local
064b3b77cf6a
·David Walend on Jan 29 2016, 21:23.
Added some logging to see what else happens
16bf34625454
·David Walend on Jan 29 2016, 18:56.

Jan 28 2016

Removed stray columns from previousQueries
d6a2021af428
·David Walend on Jan 28 2016, 18:32.
Added logging to try to find where the message comes in
85fb775a3a20
·David Walend on Jan 28 2016, 15:58.

Jan 27 2016

Attempting to track down what happened to the FlagQueryRequest's message
9a403f61dfab
·David Walend on Jan 27 2016, 22:36.
Attempting to track down what happened to the FlagQueryRequest's message
29407c707e89
·David Walend on Jan 27 2016, 22:34.
Should now handle flag/unflag query requests in the QEP's database
c623fa3f3116
·David Walend on Jan 27 2016, 22:02.
Some tests for flagged queries
254268658d55
·David Walend on Jan 27 2016, 21:49.
Add flagged query table and use it a little bit
54645092738b
·David Walend on Jan 27 2016, 20:52.

Jan 26 2016

Factored the JDNI/tomcat boilerplate off into its own class
5315849aa994
·David Walend on Jan 26 2016, 21:49.
Handling a case where the dashboard's KeyStore just has the right cert in it.
3c0dcb5f165c
·David Walend on Jan 26 2016, 19:47.
Removing the parts that the QEP uses to ask adapters for previous queries
bfad2e33d56b
·David Walend on Jan 26 2016, 18:06.
Renamed mysterious thing that is the heart of the QEP to AbstractQepService…
75b470281df5
·David Walend on Jan 26 2016, 16:45.
Renamed shrine-service to shrine-qep
4eba8153a907
·David Walend on Jan 26 2016, 16:19.
Renamed 'service' package to 'qep'
5b03b448644f
·David Walend on Jan 26 2016, 16:02.
Cleaned up dead imports from some ancient refactoring.
30dd91476f9c
·David Walend on Jan 26 2016, 15:49.
Added test for selecting by user
bfeaa8acc95a
·David Walend on Jan 26 2016, 15:42.

Jan 25 2016

Guess for the right value of queryMasterid
b3ad90ab2ed9
·David Walend on Jan 25 2016, 22:20.
Trying out reading previous queries from the db
627357bb98ce
·David Walend on Jan 25 2016, 21:40.

Jan 22 2016

Some debugs to see what's what
53d591999cb2
·David Walend on Jan 22 2016, 21:24.
Bill's recommendations for handling the previous query table
fe5b56ccf246
·David Walend on Jan 22 2016, 20:13.
Now storing queries locally in the QEP
ba61dcf294fc
·David Walend on Jan 22 2016, 17:52.

Jan 21 2016

Adding mysql.ddl for qepQueryDb. Split out the sql directory into…
4a0864cdb8b3
·David Walend on Jan 21 2016, 20:44.

Jan 20 2016

Moving sql scripts
69fb78df0401
·David Walend on Jan 20 2016, 22:05.
Added test for QepQueryDb, fixed a typo
adc59d4ba10b
·David Walend on Jan 20 2016, 16:57.

Jan 19 2016

Adding some slick code for the qep db
75f57ff39ec6
·David Walend on Jan 19 2016, 21:59.
Basics of the QueryInstance db table
e59e514d57f6
·David Walend on Jan 19 2016, 21:21.

shrine-medco/qepfeature/i2b2-merge-to…a384fbafb8eb02bbbac9286…

Jul 28 2016

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Jan 19 2016

shrine-medco/qep
feature/i2b2-merge-to…a384fbafb8eb02bbbac9286…