Graphoxydoreduc
Graph
oxydoreduc
History Graph
History Graph
Commit | Author | Details | Committed | ||||
---|---|---|---|---|---|---|---|
10ab4cafbaa0 | fabien | Add a simple timer class | Feb 27 2015 | ||||
bddaf0d936da | fabien | Add a validity check (just print warning and or error for the PCFM method… | Feb 27 2015 | ||||
38a97fbd2242 | fabien | When possible only factorize the matrix, without analysing the pattern again… | Feb 26 2015 | ||||
53237ab864d3 | fabien | Separate the analysePattern and factorization part of the sparse matrix… | Feb 26 2015 | ||||
f7c3cd7d6b9b | fabien | save the ndf in the transport program and set inline | Feb 26 2015 | ||||
ef1c9b4db70b | fabien | Minor update in the Momas benchmark database | Feb 26 2015 | ||||
339c6d31875f | fabien | Add a generic 1D mesh, issue #13 | Feb 26 2015 | ||||
9417b8aab783 | fabien | add a timer in the reactive transport solver to obtain more information about… | Feb 26 2015 | ||||
0b1682bb59f9 | fabien | Correct the AdimensionalSystem jacobian, fixes issue #29 | Feb 25 2015 | ||||
5cde60cd6d35 | fabien | Add a member to update the parameter in ExponentialMovingAverage: | Feb 25 2015 | ||||
327e2020bb5c | fabien | add a variadic template for custom initialization of the opn class in Option… | Feb 25 2015 | ||||
67ebd8dda96d | fabien | update momas example: | Feb 25 2015 | ||||
7ea49ff12a15 | fabien | obtain chemistry error in reactive transport solver, fixes issue #16 | Feb 25 2015 | ||||
e403516d3274 | fabien | add an adaptative timestepper algorithm | Feb 25 2015 | ||||
4acc10bf1dca | fabien | update momas benchmark | Feb 25 2015 | ||||
ac9b4eb735f4 | fabien | Correct the surface model, so the activity are defined with respect to the… | Feb 25 2015 | ||||
a4055a6a6783 | fabien | Correct porosity computation, minerals offset | Feb 24 2015 | ||||
998871ce7287 | fabien | Update examples : Leaching and MoMas speciation computation | Feb 23 2015 | ||||
602cfb4f2886 | fabien | Use the immobile concentration instead of the solid concentration, include the… | Feb 23 2015 | ||||
f0c4c3073b56 | fabien | Add an example for the reactive transport solver : solve the MoMas reactive… | Feb 23 2015 | ||||
6a53d7d1a970 | fabien | Add the possibility to use a different constraints for each node | Feb 23 2015 | ||||
7c8016b56303 | fabien | Do not compute speciation for a component if the total concentration is <1e-10 | Feb 23 2015 | ||||
912b33a4f6ec | fabien | Solve the advection problem with the upstream scheme | Feb 23 2015 | ||||
3013f5ef096c | fabien | Add the possibility to add slave nodes to the problem in saturated_react. Slave… | Feb 23 2015 | ||||
8c6fd9361771 | fabien | Prepare the saturated_react system to solve advection problem | Feb 23 2015 | ||||
a162fe6f75cd | fabien | Initialise the reactive transport solver Preformance struct | Feb 23 2015 | ||||
6773a29706c7 | fabien | add an error message when linesearch cannot find a step bigger than the minimum… | Feb 23 2015 | ||||
d76c3f21bd38 | fabien | Improve AdimensionalSystemSolver, initialisation of pcfm solver, debug messages… | Feb 23 2015 | ||||
8b5357988ba5 | fabien | Correct jacobian computation (both analytical and finite difference) in… | Feb 23 2015 | ||||
aa478c67960b | fabien | correct tests for AdimensionalSystem &co, add test for the PCFM method | Feb 23 2015 | ||||
d39cf3d5d38a | fabien | Improve initialisation of surface model in AdimensionalSystemConstraints | Feb 23 2015 | ||||
59f0bfff78d5 | fabien | AdimensionalSystemSolver variable initalization : change… | Feb 23 2015 | ||||
69652eb35705 | fabien | documentation fixes for AdimensionalSystemNumbering | Feb 23 2015 | ||||
4338212826c9 | fabien | Add a function in AdimensionalSystem that return the surface sorption model | Feb 23 2015 | ||||
fc5372845077 | fabien | Add a memebr to the meshes to obtain the position of a node | Feb 22 2015 | ||||
dd2b91d3795d | fabien | Add two functions in DatabaseSelector : - Remove all minerals in the… | Feb 22 2015 | ||||
5428e191095b | fabien | add relevant citations in the doxygen citation.bib file | Feb 17 2015 | ||||
7ce05df64442 | fabien | add the pcfm methods in the CMakeList.txt file | Feb 17 2015 | ||||
2d49c2d3302a | fabien | include the pcfm method to the AdimensionalSystemSolver | Feb 17 2015 | ||||
c7608a0ce239 | fabien | Add AdimensionalSystemPCFM, a class to precondition an aqeous solver using the… | Feb 17 2015 | ||||
8ecff9b7f967 | fabien | Documentation for AdimensionalSystem | Feb 17 2015 | ||||
5546ccd49e01 | fabien | add a check in database reader to ensure the the number of sites occupied by a… | Feb 16 2015 | ||||
08d31233017d | fabien | add numbering of secodnary species and activity coefficients in… | Feb 16 2015 | ||||
2e391aab5671 | fabien | Add functions for custom initialisation of the main variables | Feb 16 2015 | ||||
78836305e4b0 | fabien | reuse already defined function to compute the total solid concentration of a… | Feb 16 2015 | ||||
680ccde7e3f4 | fabien | Use the new AdimensionalSystemNumbering Base clase in the… | Feb 16 2015 | ||||
31d88c30dde8 | fabien | externalize the dof numberign of the AdimensionalSystem, so it can be used by… | Feb 16 2015 | ||||
5e7f42ca25c3 | fabien | The main variable for the free surface concentration is now a the log_10 of the… | Feb 16 2015 | ||||
422798ba5085 | fabien | Modify debug information messages so they also give the expected value | Feb 16 2015 | ||||
60c8038a6ab2 | fabien | Update test and examples of AdimensionalSystem to agree with commit 987ce30 | Feb 13 2015 | ||||
987ce3089fb7 | fabien | Modify sorped species calculation, add a specific equation. Free sorption sites… | Feb 13 2015 | ||||
e19767784417 | fabien | update MoMas benchmark database to agree with commit a8c4203 | Feb 13 2015 | ||||
a8c4203fea6b | fabien | Free sorption sites is no longer a component | Feb 13 2015 | ||||
9a4089e18a62 | fabien | add some simple tests for AdimKinetics, will add more in the future | Feb 11 2015 | ||||
8c94dee2ed89 | fabien | add a AdimensionalSolver examples / with kinetics | Feb 11 2015 | ||||
965036a9c569 | fabien | Add the database for the MoMas benchmark, maybe use for other test too | Feb 11 2015 | ||||
5b397acac2a4 | fabien | No Ca/Al/SO2 at the boundary, seems to work much better | Feb 11 2015 | ||||
f683d9d25c24 | fabien | reduce maximum step lenght in adim tests/to match others, remove a cycling… | Feb 11 2015 | ||||
26182c883bf1 | fabien | improve AdimKinetic(Euler)Solver, choose DormandPrince as the ODE integrator | Feb 11 2015 | ||||
8ec8f50ef0fa | fabien | small corrections for the adimensional system with the new sorbed species | Feb 10 2015 | ||||
7ac65cc8ee32 | fabien | modification in units::convert_pressure to avoir compiler warning | Feb 10 2015 | ||||
1af9208c7a4c | fabien | add support for sorbed species in AdmiensionalSystem | Feb 10 2015 | ||||
513ba6bd0ef3 | fabien | correct jacobian for the water equation in AdimensionalSystem, fixes issue #25 | Feb 10 2015 | ||||
298190351669 | fabien | add support for sorped species in the database | Feb 10 2015 | ||||
9290bd437d11 | fabien | small enhancements of specmicp | Feb 10 2015 | ||||
835f7071e071 | fabien | add a boolean to check that the solution has been initialized | Feb 10 2015 | ||||
c0917faf9b6a | fabien | allow custom initialisation | Feb 10 2015 | ||||
a388607362fe | fabien | add kinetics solver for the AdimensionalSystem (issue #15), TO TEST | Feb 10 2015 | ||||
a0d7a916d1a1 | fabien | remove unused struct from saturated_react | Feb 6 2015 | ||||
9be560f1edb0 | fabien | start updating the cython interface | Feb 6 2015 | ||||
9ea6b8ee2396 | fabien | update ex_reactmicp_leaching | Feb 6 2015 | ||||
47a6cfb7136d | fabien | correct AdimensionalSystemSolutionExtractor::log_molality_component for water | Feb 6 2015 | ||||
113faa16267a | fabien | add a generic Axisymmetric 1D mesh class, in process of resolving issue #13 | Feb 5 2015 | ||||
7a9771634f6a | fabien | update examples | Feb 4 2015 | ||||
cd36fb74436f | fabien | correct typo in residual water in AdimensionalSystem, fixes bug #20 | Feb 3 2015 | ||||
86c34c364f68 | fabien | add scaling for the AdimensionalSystem, fixes issue #23 | Feb 3 2015 | ||||
50b53a239634 | fabien | correct pressure contribution in specmicp, fixes issue #24 | Feb 3 2015 | ||||
c0560e3c1407 | fabien | Correct complaints of valgrind-memcheck abount non-initialized values | Jan 20 2015 | ||||
f494edc15db3 | fabien | fixes issue #19, The desctructor of SparseSolverBase was not virtual | Jan 20 2015 | ||||
29b3278d5651 | fabien | fixes bug introduced by commit 64b3616, get_performance was removed from… | Jan 20 2015 | ||||
056dfbdf23b9 | fabien | Documentation for the adimensionalsystem and associates | Jan 20 2015 | ||||
64b3616eea48 | fabien | documentation and test for the MiCP solver | Jan 20 2015 | ||||
ecc0663ea7ef | fabien | Update/improve documentation for the reactmicp::solver namespace and its members | Jan 20 2015 | ||||
78be35d16fbe | fabien | move test of ODEint solvers from the Cxxtest to the Catch framework, fixes… | Jan 19 2015 | ||||
8f33b9c54fdb | fabien | move micpsolver tests to the Catch framework, instead of the CxxTest framework | Jan 19 2015 | ||||
a4ba90c69915 | fabien | issue #8, all tests compiles | Jan 19 2015 | ||||
e10c1ed3491b | fabien | all the examples compile correctly | Jan 19 2015 | ||||
19d5b16cc3f1 | fabien | Documentation for specmicp::AdimensionalSystem | Jan 19 2015 | ||||
070e54dc9d24 | fabien | issue #4, change MULTILINE_CPP_BRIEF to NO in the doxygen configuration file | Jan 19 2015 | ||||
14f16a9d1764 | fabien | include <iostream> for the GMRES solver,m issue #17 | Jan 18 2015 | ||||
ef2d31ec34ae | fabien | update dfpmsolver::ParabolicDriver to use the new SparseSolvers of commit… | Jan 17 2015 | ||||
a247fbc100c4 | fabien | modify the sparse solver module to resolve issue #11 | Jan 17 2015 | ||||
bb1015b50ad5 | fabien | Recode database test to use the Catch framework instead of CxxTest | Jan 16 2015 | ||||
b7869e7de918 | fabien | Remove test for the OneStepImplicit saturated diffusion system | Jan 16 2015 | ||||
b2bda1a419fd | fabien | documentation | Jan 16 2015 | ||||
b9a808db21fb | fabien | Remove the one step reactive transport system - don't work, don't compile | Jan 16 2015 | ||||
4bf2553e54f6 | fabien | Improve/clean cmakelist, list requirements/options in INSTALL | Jan 16 2015 | ||||
f22e7d5e8694 | fabien | Improve leaching example for the new reactive transport solver | Jan 16 2015 | ||||
9fc5d580b72b | fabien | Do not update variables if EquilibriumSolver has not converged | Jan 16 2015 | ||||
c99feaa01903 | fabien | Prepare AdimensionalSystem environment for kinetics | Jan 15 2015 |
c4science · Help