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Diffusion SpecMiCP / ReactMiCP (oxydoreduc) Graph

specmicp/src
oxydoreduc

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CommitAuthorDetailsCommitted
f96d0f24dfe0fabien
start implementation of EquilibriumCurve approad to reactive transport 
Dec 9 2014
110e0d72687efabien
remove const keyword for the output member 
Dec 9 2014
44f3acfa1b25fabien
correct coupling, update water in speciation solver to keep saturation at 1 
Dec 9 2014
cc470b429ffafabien
start implementation of 1d diffusion 
Dec 9 2014
f1765f058b94fabien
defaults value for epsilon_jacobian in src/common.hpp 
Dec 9 2014
c3c6d4e7ad1cfabien
correct AdimensionalSystemSolver : now, works with 2 or more non active… 
Dec 9 2014
481fe8a4b959fabien
correct AdimensionalSystemSolver : now, works with 2 or more non active… 
Dec 9 2014
2f7ca0ac5ea7fabien
add member 'get_units' in units::UnitsBaseClass 
Dec 9 2014
511a07d7f37cfabien
add the dfpm module, generic finite volume module, move meshes to dfpm 
Dec 7 2014
d442c9ff39a3fabien
Add EquilibriumCurve, base class to create ReactionPath model 
Dec 5 2014
3eec16ab89bafabien
add member to compute contribution to total concentration 
Dec 5 2014
49676e6dff97fabien
initialize gas fugacity using previous solution 
Dec 3 2014
4492a6f8382afabien
solve fix activity/fix fugacity problems 
Dec 3 2014
c714d768185efabien
add handling of fugacity in AdimensionalSystemSolution 
Dec 3 2014
670db7099f20fabien
add member 'gas_label_to_id' in DatabaseModule to retrieve id of a gas 
Dec 3 2014
32144b0c32f5fabien
Add better handling of boundary conditions, toward the inclusion of fixed… 
Dec 3 2014
f5fae35bcbf9fabien
More flexible struct to choose equation type for aqueous type in the… 
Dec 2 2014
3cd1304c75d9fabien
add non fixed fugacity gas 
Dec 2 2014
56e9b0f63246fabien
Add a method to remove all gases in the SelectorDatabase module 
Dec 2 2014
0b629aa5b824fabien
add AdimensionalSystemOptions, like ReducedSystemOptions 
Dec 2 2014
7cf040dc468dfabien
add options for enabling/disabling solution of purely aqueous problem 
Dec 2 2014
e2bd2e54f5c5fabien
don't compute speciation if there is no more mineral 
Dec 1 2014
96b7b4f73361fabien
add options for reduced system 
Dec 1 2014
bc007865d143fabien
add a class to compute exponential moving average 
Dec 1 2014
32ec38c717c2fabien
try improving convergence 
Nov 25 2014
03a6ee9fa3fefabien
improve convergence for reactive transport 
Nov 24 2014
3406a6d82549fabien
Correct unit problem (again) in transport update 
Nov 24 2014
276009d19c18fabien
improve algorithm 
Nov 23 2014
fd81222c02ebfabien
add a method to check if there is any solid in the speciation solution 
Nov 23 2014
0d2b686c39c7fabien
correct compilation error link to namespace 
Nov 22 2014
01a5614ae626fabien
Merge branch 'kinetics' 
Nov 22 2014
bdfe852fa9b2georget
correct reactive transport solver 
Nov 22 2014
9d76e2cc297dgeorget
Allow for truncated axisymmetric mesh 
Nov 22 2014
3a8861713bdffabien
small corrections in specmicp ReducedSystem and associate 
Nov 22 2014
1449c5f7ed20fabien
Add AdimensionnalSystemSolutionExtractor 
Nov 22 2014
8acca7ec6e52fabien
add density of water function (to improve) and use scalar_t for the real type 
Nov 22 2014
81a129921f3ffabien
add more methods to the database which can take units as argument 
Nov 22 2014
225e2990dde6fabien
include decimeter into computation, + better restarting guess 
Nov 21 2014
dd32bf844e0cfabien
perturb jacobian if it cannot be factorized when no scaling is used - same as… 
Nov 21 2014
7976b7effc36fabien
improve problem solver 
Nov 21 2014
d4534f7eaf1efabien
add missing dependancy for src/utils/log.hpp, order of include does not matter… 
Nov 21 2014
101e1e70dfc5fabien
add decimeter as a length unit (for liter) 
Nov 21 2014
d1998e3678d3fabien
add solver for Adimensional system and Dissolver, to set up problem 
Nov 20 2014
c1d916f6a6a8fabien
add a molar_mass_basis function adjustable to the unit in the database 
Nov 20 2014
e2078e2d32aefabien
rename adim into adimensional system 
Nov 19 2014
9192af49fe62fabien
Remove unused header file in Reduced system 
Nov 19 2014
99eb486901e6fabien
add support for units in adimensional system 
Nov 19 2014
a80d7faccc53fabien
add support for units in database 
Nov 19 2014
55250fbca69dfabien
add supports for units 
Nov 19 2014
477470dc6bc8fabien
implementation of adimensional system and test 
Nov 18 2014
4905ca8043effabien
correct naming in uniform mesh 1D 
Nov 17 2014
ab9678d714b1fabien
improve reactive solver 
Nov 17 2014
811727685964fabien
style 
Nov 17 2014
6da64e226377fabien
Correct/improve equilibrium data 
Nov 16 2014
75e069a6735bfabien
use temporary variables for the computation 
Nov 13 2014
f67b525bf55ffabien
add support for gmres in sparse_solver module 
Nov 13 2014
d9b9320c1f9bfabien
use new Performance Structure/ PErformance handler and Options handler in… 
Nov 13 2014
736804e88863fabien
add options to reset the options in Options handler 
Nov 13 2014
a4f20df9b49ffabien
Add PerformanceHandler on the model of OptionsHandler 
Nov 13 2014
25b4a7a686cafabien
rename file containing the reactive transport solver options 
Nov 13 2014
e1f224c238f0fabien
improve reactmicp 
Nov 11 2014
86887f7bc2f2fabien
improve kinetic system 
Nov 11 2014
05109a387e26fabien
add computation of total concentrations in equilibrium data 
Nov 11 2014
89ad784609cffabien
correct strang linesearch 
Nov 11 2014
71533d2f738afabien
update database reader to use the 3d party jsoncpp lib 
Nov 11 2014
bc9b1984b554fabien
add kinetic solver - to be improved 
Nov 7 2014
76335401d226fabien
update/improve Runge-Kutta solver 
Nov 7 2014
f6de050d917efabien
options to enable/disable nonmonotone linesearch 
Nov 7 2014
d6ddcf0a9bd2fabien
add base class to handle options 
Nov 7 2014
2f65d5a63c08fabien
start implementing kinetics solver 
Oct 28 2014
250e37bca411fabien
clean ode integrator 
Oct 28 2014
bbb049d91863fabien
add explicit charge conservation in ReducedSystem 
Oct 26 2014
29fe36a29e5afabien
undef INFO macro, specmicp logger's INFO is the correct one, not the one by… 
Oct 26 2014
b86528d727b5fabien
move and try improving sparse solver tools 
Oct 26 2014
6d08d8744732fabien
add reactive transport neutrality solver, and update transport program and the… 
Oct 25 2014
745d2292fc54fabien
add transport_parameters_base, to share porosity and have only one variables 
Oct 25 2014
8ce74ad5e3d5fabien
set update check to be at machine epsilon in secondary variables computation 
Oct 25 2014
849e20a62100fabien
improve drivers 
Oct 25 2014
7135b65ac516fabien
correct equilibrium_date (int -> index_t) 
Oct 22 2014
6c35d421db39fabien
update program, coupler tests and examples to use new features of dfpm solver 
Oct 22 2014
a2c41c6968ccfabien
better scaling and velocity handling 
Oct 22 2014
7009d71a1296fabien
lots of small corrections 
Oct 21 2014
0e24a03b71fafabien
modify jacobian computation in electroneutrality program 
Oct 21 2014
6bc8e317a3aefabien
add scaling to dfpmsolver 
Oct 21 2014
ab2944bc8002fabien
add electroneutrality transport program 
Oct 20 2014
dd35febf8e48fabien
add minimal support for quasi Newton iterations in parabolic solver 
Oct 20 2014
e64992a2bc6cfabien
add strang linesearch into parabolic driver 
Oct 20 2014
e882181496b7fabien
start work on a the transport oslver with neutrality 
Oct 15 2014
f42f76860daffabien
adapt reduce_system_Solver to allow minerals that can't dissolve 
Oct 10 2014
4607780abc35fabien
add support for not dissolving/not precipitating minerals in database 
Oct 10 2014
9ac10ec69a99fabien
reduce header dependancy 
Oct 9 2014
e72e464ed90bfabien
add again the contribution of the descent step direction, change dection of… 
Oct 9 2014
69f1f340a8f5fabien
use typedef 
Oct 9 2014
da3d68efcce0fabien
add example directory 
Oct 8 2014
a3fe40ba7210fabien
add axissymmetric mesh 1d, one file per mesh, add reactmicp/mesh.hpp 
Oct 8 2014
d7e3744afdfefabien
correct type in safeguard 
Oct 8 2014
a82ae4d34189fabien
Prepare mesh module for asymmetric mesh 
Oct 8 2014
dbcf1c3de1b8fabien
add transport options into reactive transport options 
Oct 8 2014
e5216c0292f7fabien
detect linesearch failure in MiCPSolver, which allow restart in… 
Oct 8 2014
a70d03795fe6fabien
delete previous files added by mistake 
Oct 6 2014
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