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Diffusion SpecMiCP / ReactMiCP (reactmicp/unsaturated) Graph

specmicp/src
reactmicp/unsaturated

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CommitAuthorDetailsCommitted
8d287d0302effabien
Refactor residual and jacobian in specmicp 
Mar 31 2015
4438bed8f0a6fabien
Correct include in micpsolver.inl 
Mar 31 2015
a915d2a00af6fabien
Small changes in micpsolver 
Mar 27 2015
665b1c9415f6fabien
fixes commit 0174eeb 
Mar 27 2015
3f78fff02e69fabien
Optimize the semismooth reformulation 
Mar 27 2015
b264515ec25efabien
Udpdate license text in database module 
Mar 26 2015
0174eeb1cf69fabien
Small optimization, avoid checking and scaling the molar volumes too many times… 
Mar 26 2015
33d3d8b8a771fabien
Intern refactoring of AdimensionalSystem 
Mar 26 2015
fa87e6334e88fabien
Disable bulk copy of variables for now - to fix 
Mar 25 2015
3240263f41a0fabien
Update ReactMiCP for the new databse module 
Mar 25 2015
1cd97637d904fabien
Minor changes/bug fixes in the database module 
Mar 25 2015
ac7ea29f1b9bgeorget
Small correction to allow compilation with gcc 4.8.3 
Mar 25 2015
cdb78898dc90fabien
The timer is started when initialized 
Mar 25 2015
c6b716588c1dfabien
Update the adimensional system for the new database module 
Mar 25 2015
87fc4962ea72fabien
Bug fixes and minor improvements in the database module 
Mar 25 2015
3db25ff1295efabien
remove import of database::Database in src/database.hpp 
Mar 25 2015
c2ae9df66c89fabien
The index_t and EIGEN_DEFAULT_DENSE_INDEX_TYPE is now consistent 
Mar 25 2015
dfd04be5d63cfabien
Remove all the old code in the reactmicp folder 
Mar 24 2015
7f9de8ece968fabien
Remove the ReducedSystem 
Mar 24 2015
c2a8ab6f9a8efabien
Improves the database 
Mar 24 2015
ce7cf38633f9fabien
include half-cells reaction in the database 
Mar 19 2015
aa2cfcd016e3fabien
improve signature of functions in the physics module 
Mar 19 2015
82d0adb9bd56fabien
Add NOEXCEPT macor, noexcept if not in debug mode 
Mar 19 2015
cb15e034feadfabien
Improve the OpenMP section 
Mar 19 2015
f952caf0c318fabien
add a convenience function in specmicp adimensional solver to solve a system 
Mar 17 2015
a1bb082f067bfabien
Add a runner class for the reactive transport solver 
Mar 17 2015
c9a42d8c3f55fabien
In reactive transpor solver, return a reference to the timer instead of a copy 
Mar 17 2015
e5adba3b79c0fabien
Add the member reset_main_variables in reactmicp::solver::VariablesBase 
Mar 17 2015
08dbc2f3e912fabien
import reactive transport timestepper 
Mar 17 2015
719661d3e345fabien
add more access to the starting and ending point of a timer, aslo correct const… 
Mar 17 2015
941766fc8a67fabien
Add and improve functions in the io library 
Mar 17 2015
e94e903fe893fabien
Update headers in the src/specmicp/adimensional files 
Mar 13 2015
8e74befa1920fabien
Disable the descent condition in the AdimensionalSystemSolver. 
Mar 13 2015
5e764b31a7c6fabien
Add a return value (boolean) in the AdimensionalSystemPCFM::check_validity 
Mar 13 2015
2ab1f72f9891fabien
Remove the check for Total concentration too small in the reactive transport… 
Mar 13 2015
746e385268f2fabien
Add member functions in MiCPSolverOptions to help set the options 
Mar 13 2015
136d82ff2ccbfabien
Bypass the descent condition if the factor is negative in the MiCPsolver 
Mar 13 2015
d16ed536054ffabien
Remove the cut-off for including a component in the total concentration; the… 
Mar 13 2015
f5f97272d811fabien
Add a threshold for including the component in the computation in… 
Mar 13 2015
331aa30110bafabien
add member function is SaturatedVariables to access main variables directly 
Mar 6 2015
f26e0452c13cfabien
Minor enhancements in the Timestepper 
Mar 4 2015
64fa3c732f53fabien
correct generic 1D mesh 
Mar 4 2015
d4f8837fe33afabien
Add new ReactiveTransportSolverReturnCode in the IO library 
Mar 2 2015
5acd30632a6afabien
improve detection of problems in the ReactiveTransportSolver 
Mar 2 2015
9873b241a642fabien
Change the message for ErrorMinimized in MiCPSolver 
Mar 2 2015
aa631431a161fabien
Add a absolute tolerance test for the residuals in the parabolic driver 
Mar 2 2015
f2a40262416bfabien
add more output function 
Feb 28 2015
abe3dbcbe88dfabien
Add more information about time in ReactiveTransportPerformance 
Feb 28 2015
67e8b2d9680efabien
Add a member in SaturatedReact::Variables to reset the main variables 
Feb 28 2015
9cf41f6dfb45fabien
Randomize the restarting guess in AdimensionalSystem. 
Feb 28 2015
bf7a37fc71e9fabien
Add a simple io library to output data 
Feb 27 2015
39c9426c395dfabien
Use the new timer class in the reactive transport solver 
Feb 27 2015
10ab4cafbaa0fabien
Add a simple timer class 
Feb 27 2015
bddaf0d936dafabien
Add a validity check (just print warning and or error for the PCFM method… 
Feb 27 2015
38a97fbd2242fabien
When possible only factorize the matrix, without analysing the pattern again… 
Feb 26 2015
53237ab864d3fabien
Separate the analysePattern and factorization part of the sparse matrix… 
Feb 26 2015
f7c3cd7d6b9bfabien
save the ndf in the transport program and set inline 
Feb 26 2015
339c6d31875ffabien
Add a generic 1D mesh, issue #13 
Feb 26 2015
9417b8aab783fabien
add a timer in the reactive transport solver to obtain more information about… 
Feb 26 2015
0b1682bb59f9fabien
Correct the AdimensionalSystem jacobian, fixes issue #29 
Feb 25 2015
5cde60cd6d35fabien
Add a member to update the parameter in ExponentialMovingAverage: 
Feb 25 2015
327e2020bb5cfabien
add a variadic template for custom initialization of the opn class in Option… 
Feb 25 2015
7ea49ff12a15fabien
obtain chemistry error in reactive transport solver, fixes issue #16 
Feb 25 2015
e403516d3274fabien
add an adaptative timestepper algorithm 
Feb 25 2015
ac9b4eb735f4fabien
Correct the surface model, so the activity are defined with respect to the… 
Feb 25 2015
a4055a6a6783fabien
Correct porosity computation, minerals offset 
Feb 24 2015
602cfb4f2886fabien
Use the immobile concentration instead of the solid concentration, include the… 
Feb 23 2015
6a53d7d1a970fabien
Add the possibility to use a different constraints for each node 
Feb 23 2015
7c8016b56303fabien
Do not compute speciation for a component if the total concentration is <1e-10 
Feb 23 2015
912b33a4f6ecfabien
Solve the advection problem with the upstream scheme 
Feb 23 2015
3013f5ef096cfabien
Add the possibility to add slave nodes to the problem in saturated_react. Slave… 
Feb 23 2015
8c6fd9361771fabien
Prepare the saturated_react system to solve advection problem 
Feb 23 2015
a162fe6f75cdfabien
Initialise the reactive transport solver Preformance struct 
Feb 23 2015
6773a29706c7fabien
add an error message when linesearch cannot find a step bigger than the minimum… 
Feb 23 2015
d76c3f21bd38fabien
Improve AdimensionalSystemSolver, initialisation of pcfm solver, debug messages… 
Feb 23 2015
8b5357988ba5fabien
Correct jacobian computation (both analytical and finite difference) in… 
Feb 23 2015
d39cf3d5d38afabien
Improve initialisation of surface model in AdimensionalSystemConstraints 
Feb 23 2015
59f0bfff78d5fabien
AdimensionalSystemSolver variable initalization : change… 
Feb 23 2015
69652eb35705fabien
documentation fixes for AdimensionalSystemNumbering 
Feb 23 2015
4338212826c9fabien
Add a function in AdimensionalSystem that return the surface sorption model 
Feb 23 2015
fc5372845077fabien
Add a memebr to the meshes to obtain the position of a node 
Feb 22 2015
dd2b91d3795dfabien
Add two functions in DatabaseSelector : - Remove all minerals in the… 
Feb 22 2015
2d49c2d3302afabien
include the pcfm method to the AdimensionalSystemSolver 
Feb 17 2015
c7608a0ce239fabien
Add AdimensionalSystemPCFM, a class to precondition an aqeous solver using the… 
Feb 17 2015
8ecff9b7f967fabien
Documentation for AdimensionalSystem 
Feb 17 2015
5546ccd49e01fabien
add a check in database reader to ensure the the number of sites occupied by a… 
Feb 16 2015
08d31233017dfabien
add numbering of secodnary species and activity coefficients in… 
Feb 16 2015
2e391aab5671fabien
Add functions for custom initialisation of the main variables 
Feb 16 2015
78836305e4b0fabien
reuse already defined function to compute the total solid concentration of a… 
Feb 16 2015
680ccde7e3f4fabien
Use the new AdimensionalSystemNumbering Base clase in the… 
Feb 16 2015
31d88c30dde8fabien
externalize the dof numberign of the AdimensionalSystem, so it can be used by… 
Feb 16 2015
5e7f42ca25c3fabien
The main variable for the free surface concentration is now a the log_10 of the… 
Feb 16 2015
422798ba5085fabien
Modify debug information messages so they also give the expected value 
Feb 16 2015
987ce3089fb7fabien
Modify sorped species calculation, add a specific equation. Free sorption sites… 
Feb 13 2015
a8c4203fea6bfabien
Free sorption sites is no longer a component 
Feb 13 2015
26182c883bf1fabien
improve AdimKinetic(Euler)Solver, choose DormandPrince as the ODE integrator 
Feb 11 2015
8ec8f50ef0fafabien
small corrections for the adimensional system with the new sorbed species 
Feb 10 2015
7ac65cc8ee32fabien
modification in units::convert_pressure to avoir compiler warning 
Feb 10 2015
1af9208c7a4cfabien
add support for sorbed species in AdmiensionalSystem 
Feb 10 2015
513ba6bd0ef3fabien
correct jacobian for the water equation in AdimensionalSystem, fixes issue #25 
Feb 10 2015
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