specmicp/srcyaml/safe
specmicp/src
yaml/safe
History Graph
History Graph
| Commit | Author | Details | Committed | |||
|---|---|---|---|---|---|---|
| f2a40262416b | fabien | add more output function | Feb 28 2015 | |||
| abe3dbcbe88d | fabien | Add more information about time in ReactiveTransportPerformance | Feb 28 2015 | |||
| 67e8b2d9680e | fabien | Add a member in SaturatedReact::Variables to reset the main variables | Feb 28 2015 | |||
| 9cf41f6dfb45 | fabien | Randomize the restarting guess in AdimensionalSystem. | Feb 28 2015 | |||
| bf7a37fc71e9 | fabien | Add a simple io library to output data | Feb 27 2015 | |||
| 39c9426c395d | fabien | Use the new timer class in the reactive transport solver | Feb 27 2015 | |||
| 10ab4cafbaa0 | fabien | Add a simple timer class | Feb 27 2015 | |||
| bddaf0d936da | fabien | Add a validity check (just print warning and or error for the PCFM method… | Feb 27 2015 | |||
| 38a97fbd2242 | fabien | When possible only factorize the matrix, without analysing the pattern again… | Feb 26 2015 | |||
| 53237ab864d3 | fabien | Separate the analysePattern and factorization part of the sparse matrix… | Feb 26 2015 | |||
| f7c3cd7d6b9b | fabien | save the ndf in the transport program and set inline | Feb 26 2015 | |||
| 339c6d31875f | fabien | Add a generic 1D mesh, issue #13 | Feb 26 2015 | |||
| 9417b8aab783 | fabien | add a timer in the reactive transport solver to obtain more information about… | Feb 26 2015 | |||
| 0b1682bb59f9 | fabien | Correct the AdimensionalSystem jacobian, fixes issue #29 | Feb 25 2015 | |||
| 5cde60cd6d35 | fabien | Add a member to update the parameter in ExponentialMovingAverage: | Feb 25 2015 | |||
| 327e2020bb5c | fabien | add a variadic template for custom initialization of the opn class in Option… | Feb 25 2015 | |||
| 7ea49ff12a15 | fabien | obtain chemistry error in reactive transport solver, fixes issue #16 | Feb 25 2015 | |||
| e403516d3274 | fabien | add an adaptative timestepper algorithm | Feb 25 2015 | |||
| ac9b4eb735f4 | fabien | Correct the surface model, so the activity are defined with respect to the… | Feb 25 2015 | |||
| a4055a6a6783 | fabien | Correct porosity computation, minerals offset | Feb 24 2015 | |||
| 602cfb4f2886 | fabien | Use the immobile concentration instead of the solid concentration, include the… | Feb 23 2015 | |||
| 6a53d7d1a970 | fabien | Add the possibility to use a different constraints for each node | Feb 23 2015 | |||
| 7c8016b56303 | fabien | Do not compute speciation for a component if the total concentration is <1e-10 | Feb 23 2015 | |||
| 912b33a4f6ec | fabien | Solve the advection problem with the upstream scheme | Feb 23 2015 | |||
| 3013f5ef096c | fabien | Add the possibility to add slave nodes to the problem in saturated_react. Slave… | Feb 23 2015 | |||
| 8c6fd9361771 | fabien | Prepare the saturated_react system to solve advection problem | Feb 23 2015 | |||
| a162fe6f75cd | fabien | Initialise the reactive transport solver Preformance struct | Feb 23 2015 | |||
| 6773a29706c7 | fabien | add an error message when linesearch cannot find a step bigger than the minimum… | Feb 23 2015 | |||
| d76c3f21bd38 | fabien | Improve AdimensionalSystemSolver, initialisation of pcfm solver, debug messages… | Feb 23 2015 | |||
| 8b5357988ba5 | fabien | Correct jacobian computation (both analytical and finite difference) in… | Feb 23 2015 | |||
| d39cf3d5d38a | fabien | Improve initialisation of surface model in AdimensionalSystemConstraints | Feb 23 2015 | |||
| 59f0bfff78d5 | fabien | AdimensionalSystemSolver variable initalization : change… | Feb 23 2015 | |||
| 69652eb35705 | fabien | documentation fixes for AdimensionalSystemNumbering | Feb 23 2015 | |||
| 4338212826c9 | fabien | Add a function in AdimensionalSystem that return the surface sorption model | Feb 23 2015 | |||
| fc5372845077 | fabien | Add a memebr to the meshes to obtain the position of a node | Feb 22 2015 | |||
| dd2b91d3795d | fabien | Add two functions in DatabaseSelector : - Remove all minerals in the… | Feb 22 2015 | |||
| 2d49c2d3302a | fabien | include the pcfm method to the AdimensionalSystemSolver | Feb 17 2015 | |||
| c7608a0ce239 | fabien | Add AdimensionalSystemPCFM, a class to precondition an aqeous solver using the… | Feb 17 2015 | |||
| 8ecff9b7f967 | fabien | Documentation for AdimensionalSystem | Feb 17 2015 | |||
| 5546ccd49e01 | fabien | add a check in database reader to ensure the the number of sites occupied by a… | Feb 16 2015 | |||
| 08d31233017d | fabien | add numbering of secodnary species and activity coefficients in… | Feb 16 2015 | |||
| 2e391aab5671 | fabien | Add functions for custom initialisation of the main variables | Feb 16 2015 | |||
| 78836305e4b0 | fabien | reuse already defined function to compute the total solid concentration of a… | Feb 16 2015 | |||
| 680ccde7e3f4 | fabien | Use the new AdimensionalSystemNumbering Base clase in the… | Feb 16 2015 | |||
| 31d88c30dde8 | fabien | externalize the dof numberign of the AdimensionalSystem, so it can be used by… | Feb 16 2015 | |||
| 5e7f42ca25c3 | fabien | The main variable for the free surface concentration is now a the log_10 of the… | Feb 16 2015 | |||
| 422798ba5085 | fabien | Modify debug information messages so they also give the expected value | Feb 16 2015 | |||
| 987ce3089fb7 | fabien | Modify sorped species calculation, add a specific equation. Free sorption sites… | Feb 13 2015 | |||
| a8c4203fea6b | fabien | Free sorption sites is no longer a component | Feb 13 2015 | |||
| 26182c883bf1 | fabien | improve AdimKinetic(Euler)Solver, choose DormandPrince as the ODE integrator | Feb 11 2015 | |||
| 8ec8f50ef0fa | fabien | small corrections for the adimensional system with the new sorbed species | Feb 10 2015 | |||
| 7ac65cc8ee32 | fabien | modification in units::convert_pressure to avoir compiler warning | Feb 10 2015 | |||
| 1af9208c7a4c | fabien | add support for sorbed species in AdmiensionalSystem | Feb 10 2015 | |||
| 513ba6bd0ef3 | fabien | correct jacobian for the water equation in AdimensionalSystem, fixes issue #25 | Feb 10 2015 | |||
| 298190351669 | fabien | add support for sorped species in the database | Feb 10 2015 | |||
| 9290bd437d11 | fabien | small enhancements of specmicp | Feb 10 2015 | |||
| 835f7071e071 | fabien | add a boolean to check that the solution has been initialized | Feb 10 2015 | |||
| c0917faf9b6a | fabien | allow custom initialisation | Feb 10 2015 | |||
| a388607362fe | fabien | add kinetics solver for the AdimensionalSystem (issue #15), TO TEST | Feb 10 2015 | |||
| a0d7a916d1a1 | fabien | remove unused struct from saturated_react | Feb 6 2015 | |||
| 47a6cfb7136d | fabien | correct AdimensionalSystemSolutionExtractor::log_molality_component for water | Feb 6 2015 | |||
| 113faa16267a | fabien | add a generic Axisymmetric 1D mesh class, in process of resolving issue #13 | Feb 5 2015 | |||
| cd36fb74436f | fabien | correct typo in residual water in AdimensionalSystem, fixes bug #20 | Feb 3 2015 | |||
| 86c34c364f68 | fabien | add scaling for the AdimensionalSystem, fixes issue #23 | Feb 3 2015 | |||
| 50b53a239634 | fabien | correct pressure contribution in specmicp, fixes issue #24 | Feb 3 2015 | |||
| c0560e3c1407 | fabien | Correct complaints of valgrind-memcheck abount non-initialized values | Jan 20 2015 | |||
| f494edc15db3 | fabien | fixes issue #19, The desctructor of SparseSolverBase was not virtual | Jan 20 2015 | |||
| 29b3278d5651 | fabien | fixes bug introduced by commit 64b3616, get_performance was removed from… | Jan 20 2015 | |||
| 056dfbdf23b9 | fabien | Documentation for the adimensionalsystem and associates | Jan 20 2015 | |||
| 64b3616eea48 | fabien | documentation and test for the MiCP solver | Jan 20 2015 | |||
| ecc0663ea7ef | fabien | Update/improve documentation for the reactmicp::solver namespace and its members | Jan 20 2015 | |||
| a4ba90c69915 | fabien | issue #8, all tests compiles | Jan 19 2015 | |||
| 19d5b16cc3f1 | fabien | Documentation for specmicp::AdimensionalSystem | Jan 19 2015 | |||
| 14f16a9d1764 | fabien | include <iostream> for the GMRES solver,m issue #17 | Jan 18 2015 | |||
| ef2d31ec34ae | fabien | update dfpmsolver::ParabolicDriver to use the new SparseSolvers of commit… | Jan 17 2015 | |||
| a247fbc100c4 | fabien | modify the sparse solver module to resolve issue #11 | Jan 17 2015 | |||
| b2bda1a419fd | fabien | documentation | Jan 16 2015 | |||
| b9a808db21fb | fabien | Remove the one step reactive transport system - don't work, don't compile | Jan 16 2015 | |||
| 9fc5d580b72b | fabien | Do not update variables if EquilibriumSolver has not converged | Jan 16 2015 | |||
| c99feaa01903 | fabien | Prepare AdimensionalSystem environment for kinetics | Jan 15 2015 | |||
| c4a87185190b | fabien | add member function in database::Database to keep only certain minerals (given… | Jan 15 2015 | |||
| a3c945176de8 | fabien | Restart values for the concentration in AdimensionalSystem is now an… | Jan 15 2015 | |||
| d4ae324ea89d | fabien | Improvements/bug correction in the saturated react system | Jan 14 2015 | |||
| 26ecea65a83b | fabien | Add AdimensionalSystemSolutionModificator, to modify (scaling, removing solid… | Jan 14 2015 | |||
| 0bedb6497e35 | fabien | add more test for saturated_react system, correct bugs | Jan 12 2015 | |||
| 1d57790e5b76 | fabien | Minor\ corrections in SaturatedReact systems | Jan 12 2015 | |||
| 55b82d2b1e21 | fabien | A return code was missing in ReactiveTransportSolver::solve_one_iteration | Jan 12 2015 | |||
| cefbc702655c | fabien | use correct mmember functions in assert in AdimensionalSystem | Jan 12 2015 | |||
| 87604b01bf0d | fabien | Set the return code to the correct value if linesearch has failed in MiCPsolver | Jan 12 2015 | |||
| 3c484d96fa9b | fabien | Start the work on the new SaturatedDiffusion systems for the new reactive… | Jan 12 2015 | |||
| edab8e64cbc6 | fabien | Correct typo in reactmicp::solver::StaggerReturnCode | Jan 12 2015 | |||
| 17ac62383dd7 | fabien | improve reactive transport solver | Jan 10 2015 | |||
| 6f21451dd340 | fabien | Improve reactive transport solver | Jan 9 2015 | |||
| a19ce13e1a11 | fabien | add foundations of the flexible reactive transport solver | Jan 9 2015 | |||
| 1bd7817be013 | fabien | update reactmicp/equilibrium_curve to agree with commit 030defd, rename BC to… | Dec 19 2014 | |||
| 030defdf3929 | fabien | rename BC to constraints in AdimensionalSystem | Dec 19 2014 | |||
| 681e327723b8 | fabien | do not copy the solution in the solution extractor | Dec 19 2014 | |||
| 6dd908c529b8 | fabien | use previous flux in reactive transport - do not work | Dec 16 2014 | |||
| 2898b6821462 | fabien | use correct density at 25C | Dec 16 2014 | |||
| 6203177d8b3f | fabien | improve documentation of AdimensionalSystem | Dec 15 2014 |
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