Diffusion SpecMiCP / ReactMiCP (chloride) History

History
chloridedb9ec96e42002d488aead67…

Sep 2 2018

test: bump catch2 to version 2.3.0
db9ec96e4200
·georget on Sep 2 2018, 17:41.

Aug 24 2018

reactmicp:chloride start working towards exec for chloride system
29ed1db4fb30
·georget on Aug 24 2018, 12:44.
reactmicp:runner move some function of SimulationInfo to cpp file
0b52e3b5e97f
·georget on Aug 24 2018, 12:17.
reactmicp:bin reorganize unsaturated binary to allow reuse for chloride binary
375cb4f0deed
·georget on Aug 24 2018, 12:14.
common:openmp improve eigen parallel support
df14d38fdd98
·georget on Aug 24 2018, 12:06.
database:print add member to print general info in conf log
e9b4e9a93f97
·georget on Aug 24 2018, 12:05.

Aug 15 2018

reactmicp:chloride improve boundary conditions and add configuration
12ee7fce271b
·georget on Aug 15 2018, 16:16.
reactmicp:systems move AdimConstraints into common
773188cd2fbe
·georget on Aug 15 2018, 16:16.
reactmicp:common move configuration for equilibriumOptionsVector to common
5051d957d18f
·georget on Aug 15 2018, 09:23.

Aug 14 2018

reactmicp:chloride add HDF5 reader/saver
68302da2615f
·georget on Aug 14 2018, 18:57.
reactmicp:chloride misc improvement
ccc131052ac4
·georget on Aug 14 2018, 18:57.
reactmicp:unsaturated update to new common reactmicp system
4a73e9b95387
·georget on Aug 14 2018, 18:57.
reactmicp:systems add common to gather boilerplates between systems
c56a7c260189
·georget on Aug 14 2018, 18:57.
hdf5:timesteps add member to retrieve timesteps as strings
c462fd6916c2
·georget on Aug 14 2018, 18:57.
common:hdf5 add partial read of datasets
4af1bea1b14d
·georget on Aug 14 2018, 18:57.

Aug 7 2018

reactmicp:chloride constraints is provided by BCs
0363df1a334f
·georget on Aug 7 2018, 14:29.
reactmicp:chloride add init_variables
44a3ef5ab597
·georget on Aug 7 2018, 14:25.
reactmicp:chloride transport stagger now use chem stagger
3e713c77b395
·georget on Aug 7 2018, 08:56.

Jul 3 2018

reactmicp:chloride use openmp in transport stagger
1acce8e96b7d
·georget on Jul 3 2018, 14:58.

Jun 29 2018

reactmicp:minor public classes in libraries
fc5f9eb0803a
·georget on Jun 29 2018, 14:20.

Jun 25 2018

Merge branch 'chloride' of bitbucket.org:specmicp/specmicp into chloride
38c6305ed272
·georget on Jun 25 2018, 18:18.
reactmicp:chloride bit of cleaning in transport program
cc0bc69f6348
·georget on Jun 25 2018, 18:11.
examples: update momas example to new sorption
ad3ed20db6c3
·georget on Jun 25 2018, 18:11.
major:specmicp add sorption EDL model
25b655cbf3cf
·georget on Jun 25 2018, 18:11.
major:database new sorbed species system
824b243e25d0
·georget on Jun 25 2018, 18:11.
minor: modify benchmarks to new benchmark version
143633e7a9ad
·georget on Jun 25 2018, 15:47.

Apr 10 2018

database:breaking refactor interface: only one surface site per sorbed species
a908a67d3e8c
·georget on Apr 10 2018, 09:23.

Apr 3 2018

specmicp: update specmicp system to new database format
1a9ce37fc033
·georget on Apr 3 2018, 13:12.
database:breaking Add multiple surface sites
d86d6fd4da06
·georget on Apr 3 2018, 13:04.

Mar 11 2018

example: update migration example
b565a6c9ae5e
·georget on Mar 11 2018, 16:24.

Mar 3 2018

build:minor add option to disable reactmicp system
39bff88c9e9a
·georget on Mar 3 2018, 10:37.

Mar 2 2018

minor:chloride make sure test run faster.
2ca26e872401
·georget on Mar 2 2018, 16:34.
common:fix density computation
349940604565
·georget on Mar 2 2018, 16:31.

Feb 21 2018

chloride: add examples
567a7dcef6d9
·georget on Feb 21 2018, 14:39.
specmicp: add charge balance computation in extractor
141c345d74de
·georget on Feb 21 2018, 14:37.
chloride: fixes for chemistry solver in transport program
1ca349fa1a0e
·georget on Feb 21 2018, 14:36.

Feb 14 2018

chloride: perturb adim, current and potential init
628531a71b14
·georget on Feb 14 2018, 12:00.

Feb 13 2018

chloride: good equilibrium obtained for Na/Cl system
03817253affd
·georget on Feb 13 2018, 13:15.
mesh:minor check input for range mesh
af1c6caafe71
·georget on Feb 13 2018, 13:04.
dfpm:minor style corrections
aee5da67f2eb
·georget on Feb 13 2018, 13:03.

Jan 29 2018

tmp: lot small changes for system transfer
35557e3cfb69
·georget on Jan 29 2018, 20:36.

Dec 22 2017

chloride: more work on the chloride system
848705901e68
·georget on Dec 22 2017, 16:56.
common:add helpers function for eigen
3df7e4247bb7
·georget on Dec 22 2017, 16:51.
fix:Smart solver now use units from reactant box
c06fce498b9a
·georget on Dec 22 2017, 16:49.

Dec 11 2017

chloride:fix with tests
c900f5ba2d13
·georget on Dec 11 2017, 11:54.
reactmicp:add helper function to transform dfpm return code
8a7c3529bcc0
·georget on Dec 11 2017, 11:52.

Dec 8 2017

continuing chloride system implementation
00f02a85ce08
·georget on Dec 8 2017, 17:24.

Nov 27 2017

reactmicp: add member to ChemistryStaggerBase
5d637ad6be6d
·georget on Nov 27 2017, 11:47.
common:add a generic return code for solver-agnostic algorithms
2e2b628aa887
·georget on Nov 27 2017, 11:47.

Nov 20 2017

chloride: first commit for new chloride system
3a45c7fe073a
·georget on Nov 20 2017, 13:14.

Nov 10 2017

test:fix remove bad dependancy in io_hdf5_meshes
3e3001b7784a
·branch: master
·georget on Nov 10 2017, 10:31.

Nov 8 2017

build:fix YAML imported target for cmake < 3.7.0
f915e6b208c1
·georget on Nov 8 2017, 10:54.

Nov 7 2017

docker: update docker files
5f551f547deb
·georget on Nov 7 2017, 17:25.
test:fix move to Catch2
d4fc19a685a4
·georget on Nov 7 2017, 16:02.
build:fix fix the fix for hdf5
ae89bd4c49f6
·georget on Nov 7 2017, 16:00.

Nov 1 2017

build:fix use correct hdf5 library path
fcd46f4bbaa8
·georget on Nov 1 2017, 15:53.
build:minor remove gcc7 warning with eigen includes
cb0ab9a56b35
·georget on Nov 1 2017, 15:52.

Oct 31 2017

build:fix PGO optimization
50d9a67908d3
·georget on Oct 31 2017, 13:18.
fix: install specimcp_common/config.h header
dee7f564bf24
·georget on Oct 31 2017, 13:16.

Oct 30 2017

build:fix be sure to pass EIGEN3_UNSUPPORTED_FOUND definition
45799c295e84
·georget on Oct 30 2017, 09:30.
dfpm:fix:minor correct typo
4fcb60e988fc
·georget on Oct 30 2017, 09:29.

Oct 29 2017

Merge branch 'master' of bitbucket.org:specmicp/specmicp
52bed7d1d852
·georget on Oct 29 2017, 18:32.
build:feature add option to use lapacke in Eigen
3bbaea7497b8
·georget on Oct 29 2017, 18:30.

Oct 27 2017

build: fix yaml import target for cmake < 3.6
c8b8d225dd2d
·georget on Oct 27 2017, 18:12.
Some more comments
921a58bdaf61
·georget on Oct 27 2017, 18:06.

Sep 13 2017

fix:build fix typo in package config file
7bba7974bc8a
·georget on Sep 13 2017, 17:15.
fix:eigen fix sparse_lu module
d2545c482392
·georget on Sep 13 2017, 16:24.
build:fix let's fix the examples
a36c9e0601c1
·georget on Sep 13 2017, 12:54.
build:fix now it's the turn of bin/tests and benchmarks
d796dbb0343c
·georget on Sep 13 2017, 12:23.
build:fix fix dfpm dependancy to yaml-cpp
2af1350d30dd
·georget on Sep 13 2017, 11:44.
build:fix one more for the road baby
9e31d0b9115e
·georget on Sep 13 2017, 11:40.
build:fix add PkgConfig::YAML target for old cmake
b792a2956ec6
·georget on Sep 13 2017, 11:21.
build:fix database uses plain yaml interface
25c945ad9a59
·georget on Sep 13 2017, 11:05.

Sep 12 2017

build:fix use imported hdf5 path, #blamedebian
6357db487983
·georget on Sep 12 2017, 16:51.
build:fix fix hdf5 include dirs
fd1f6982eaf8
·georget on Sep 12 2017, 16:34.
build:fix well...
e7d68c9347c5
·georget on Sep 12 2017, 16:28.
build:fix add yaml include dirs #blame-debian
b928052f5fbc
·georget on Sep 12 2017, 16:20.
build: fix the fix, std(11)(14) compilation
569af6df0266
·georget on Sep 12 2017, 15:58.
build: fix main CMakeLists for cmake <3.8
40b83bbfcf6f
·georget on Sep 12 2017, 15:22.
build: Add SpecMiCPConfig.cmake : package file
990fa8a6d5ec
·georget on Sep 12 2017, 13:20.

Sep 11 2017

build: refactor cmake file for cmake config file
9f0bfa6957ca
·georget on Sep 11 2017, 15:59.

Aug 22 2017

doc: More documentation !
4728ae8e7325
·georget on Aug 22 2017, 22:03.

Aug 4 2017

fix propagates typo correction
ca7b5e361a03
·georget on Aug 4 2017, 19:12.
build: correct lto for clang
af5dbe8741b3
·georget on Aug 4 2017, 19:02.
Documentation run
f7c95635bdac
·georget on Aug 4 2017, 18:52.

May 16 2017

fix: compilation with clang++
b4fb4366dd98
·georget on May 16 2017, 22:57.
minor: complete specmicp bin to match unsaturated
0a6168e296d9
·georget on May 16 2017, 19:57.

Apr 28 2017

minor: format fix
338641c069f9
·georget on Apr 28 2017, 20:34.
fix:test correct specmicp_bin arguments
c0c0ab67b44e
·georget on Apr 28 2017, 20:18.
common: fix cli parser backend
e6c26c6b2885
·georget on Apr 28 2017, 20:15.

Apr 21 2017

specmicp:bin update to match reactmicp-unsaturated
c0da2ae5f913
·georget on Apr 21 2017, 20:18.
database: add ENV reader for db
65d091e2f810
·georget on Apr 21 2017, 20:16.

Apr 20 2017

common:log correct segfault of if no all_io_files
0fc353dd99de
·georget on Apr 20 2017, 17:47.

Apr 18 2017

common: Add io files tracker
6ab3d4f897e0
·georget on Apr 18 2017, 23:01.
reactmicp:runner return _iter filepath
7689995362b8
·georget on Apr 18 2017, 22:49.
minor:reactmicp:unsaturated add useful comment on variables creation
370081051f4e
·georget on Apr 18 2017, 22:44.
Correct data and time parsing for DST
2919173a8b48
·georget on Apr 18 2017, 22:06.

Mar 13 2017

fix:unsaturated read inert_volume_fractio from hdf5 file
8044abc08d5b
·georget on Mar 13 2017, 18:40.

Mar 7 2017

common:io add a file to register all files
ff4beacfbb0d
·georget on Mar 7 2017, 19:45.
common: add read date/item string
c5793433c3d6
·georget on Mar 7 2017, 19:43.

Historychloridedb9ec96e42002d488aead67…

Sep 2 2018

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History
chloridedb9ec96e42002d488aead67…