Diffusion SpecMiCP / ReactMiCP (cython) History

History
cython7534f12303226c56a30cc3c…

Jun 4 2014

add test to develop kinetics
7534f1230322
·georget on Jun 4 2014, 15:11.

Jun 3 2014

correct bug in database - allow selection of components
063a9f5832a7
·georget on Jun 3 2014, 16:05.

Jun 2 2014

adaptative step for embedded runge kutta
f41982d51b13
·georget on Jun 2 2014, 19:07.

May 29 2014

change template parameter - less confusing
0c026352549a
·georget on May 29 2014, 21:46.
add support for DormandPrince method
563cc0253cc5
·georget on May 29 2014, 21:09.
Merge branch 'kinetics' of bitbucket.org:fabieng/specmicp into kinetics
11eedde3292f
·georget on May 29 2014, 20:09.
start inplementing ode integrator
f71ccdc1dc33
·georget on May 29 2014, 20:09.

May 20 2014

start works on kinetic
f5c48f3f547f
·georget on May 20 2014, 15:58.
add example that computes supersaturation of C3S to obtain the kinetic rate…
83765d524169
·georget on May 20 2014, 15:47.
compute logIAP of a mineral - maybe to simplified
1592526f1247
·georget on May 20 2014, 15:41.

May 16 2014

start works on kinetic
5cfa0ee7755d
·georget on May 16 2014, 20:22.
improve robusteness with respect to change in the database
9969eeeae53a
·georget on May 16 2014, 20:08.
add Cl in database, correct logK for C3S C2S
1e8de8ef1a54
·georget on May 16 2014, 19:58.
also select the correct minerals governed by kinetics
e25bc4143ef5
·georget on May 16 2014, 19:57.

May 15 2014

add a simulation of alkali activated cement - just a POC for now
d687b3784285
·georget on May 15 2014, 20:43.
add sodium into database
7897b25a3aac
·georget on May 15 2014, 20:42.

May 3 2014

remove extended system and min function support in micpsolver
843229b1b8a7
·georget on May 3 2014, 22:34.
documentation
7faccfcacb59
·tag: 0.0.1
·georget on May 3 2014, 21:21.

May 1 2014

add test when reading database, check for consistency of charges
6e931682987f
·georget on May 1 2014, 00:19.

Apr 30 2014

improve cemdata database - add references
e54ec6d22bfb
·georget on Apr 30 2014, 23:55.
improve convergence ?
f55c50218084
·georget on Apr 30 2014, 20:07.
deactivate non-active test
27de60f482a7
·georget on Apr 30 2014, 20:05.
activate all species in cemdata database
9c9b751a6b4b
·georget on Apr 30 2014, 20:04.
use last development in databases modules
c0c6efecc588
·georget on Apr 30 2014, 20:00.
Add database module to keep only some minerals in equilibrium computation
68d4d285bf5e
·georget on Apr 30 2014, 19:59.
add base class for database modules
fe85b199d55b
·georget on Apr 30 2014, 17:44.
add minerals with kinetic flag
6e170dc80e1e
·georget on Apr 30 2014, 00:23.

Apr 29 2014

test last developments
cc6eba9f282d
·georget on Apr 29 2014, 22:08.
allow dissolution of minerals and aqueous species
07e0e8497a80
·georget on Apr 29 2014, 22:04.
add support for kinetically governed minerals
2c2e886f02ce
·georget on Apr 29 2014, 21:29.
add min-FB linesearch arlgorithm - does not work
98612e6c3e19
·georget on Apr 29 2014, 19:54.

Apr 25 2014

Prepare the new min micpsolver
9ae71fb529cc
·georget on Apr 25 2014, 18:44.

Apr 18 2014

correction of the databe, set some phase to be inactive (should be in the code)
0ce1acd6f2e1
·georget on Apr 18 2014, 23:26.
modify thermocarbo, add carboalu
371ef7b904c2
·georget on Apr 18 2014, 23:25.
modify the restarting strategy
c69b6bbe42b8
·georget on Apr 18 2014, 23:24.
correct computation of total aquoues concentration in the case where one…
96cb0e494d88
·georget on Apr 18 2014, 23:23.
use the max_factorization option in the no_Scaling solution
a5a27e272923
·georget on Apr 18 2014, 23:21.

Apr 15 2014

minor changes in thermocarbo
c1effab37d20
·georget on Apr 15 2014, 02:41.
reduce number of variables to the active set when the min function is used
3f9089b77fc2
·georget on Apr 15 2014, 02:40.
add an option to disallow automatic restart
c361bc90119b
·georget on Apr 15 2014, 02:38.

Apr 14 2014

start working on a global algorithm for reaction path modeling
e9fae70e5055
·georget on Apr 14 2014, 19:53.
more tests
f1691b964fa6
·georget on Apr 14 2014, 19:50.
initialisation
ce5e17f2cd94
·georget on Apr 14 2014, 19:48.
initialize variables
cfc0b7deec27
·georget on Apr 14 2014, 19:45.

Apr 12 2014

add 2 performance object together
89b65baa7e9a
·georget on Apr 12 2014, 17:55.

Apr 11 2014

thermocarbo : update to use new api, clean and all
201560830e3f
·georget on Apr 11 2014, 22:55.
easier way to change a basis
4c6dfeae96da
·georget on Apr 11 2014, 22:49.
add aluminum case
38ae5d08d8c3
·georget on Apr 11 2014, 22:01.
correct bug, enhance errors
3e40c915ae53
·georget on Apr 11 2014, 22:01.
correct bugs
be6d4801e493
·georget on Apr 11 2014, 22:01.
also select aqueous parameters
2ceac1e74674
·georget on Apr 11 2014, 22:01.
add aluminum and sulfate species
ce70030dc91e
·georget on Apr 11 2014, 22:01.
manage options a little better
7a6b209cf0ce
·georget on Apr 11 2014, 15:47.
add options to limit the number of factorization step
a14a8bf5ce2c
·georget on Apr 11 2014, 15:45.

Apr 10 2014

Choose the NCP-function to use
99cf67ee7b3c
·georget on Apr 10 2014, 21:06.
add test_kojima_min
aeac1a8c76e8
·georget on Apr 10 2014, 20:55.
add support for using min as a NCP-function
a8ca288cc7f5
·georget on Apr 10 2014, 20:49.
works but slow
16a46eb4411f
·georget on Apr 10 2014, 16:24.
better handling of non existing component
bebc0a28d0df
·georget on Apr 10 2014, 15:17.
correction of perturbation and detection of stationary point (issue #3)
b75af9fe6fdc
·georget on Apr 10 2014, 15:13.
move canonicalization and basis_switching to their own class, Database call…
2a2c40048cee
·georget on Apr 10 2014, 00:16.
database : add invalid_database exception, move definition of exceptions in…
5d310946ccfe
·georget on Apr 10 2014, 00:13.

Apr 9 2014

use the reaction path driver
2f0c6c03062a
·branch: reaction_path
·georget on Apr 9 2014, 23:12.
add ReactionPathDriver - able to run
98ef97febe79
·georget on Apr 9 2014, 23:12.
add a defautl constructor
d38dc8a3264e
·georget on Apr 9 2014, 23:11.
change default value, best for our problems
9e86c2755aa3
·georget on Apr 9 2014, 23:10.
different way to initialize a database
bf4aba0306f5
·georget on Apr 9 2014, 23:09.
Thermocarbo : use the ReduccedSystemSolver
2bbd6b3a50f5
·georget on Apr 9 2014, 21:22.
Add the class ReducedSystemSolver, interface to solve a ReducedSystem
26d44083fef7
·georget on Apr 9 2014, 21:16.
Add a method to return the list of non active components
b2b3619c1e93
·georget on Apr 9 2014, 21:13.
Database can now remove some components (and the corresponding species) from…
cc06c8c7b905
·georget on Apr 9 2014, 21:10.
Thermodata may need to return the raw database
a17e5379d078
·georget on Apr 9 2014, 21:08.
Set options in bulk
fac9d726710f
·georget on Apr 9 2014, 21:07.
optimize reformulation of jacobian
3001d89b9660
·georget on Apr 9 2014, 20:55.
separate struct and enum used by MiCPSolver in a different header
50a966577063
·georget on Apr 9 2014, 20:08.
database selector - remove components from the basis
a293c41b2539
·georget on Apr 9 2014, 16:55.

Apr 8 2014

take advantage of the desactivation of component to model the complete path…
7d4080d66303
·georget on Apr 8 2014, 23:56.
allow the desactivation of a component
0e5c208d1044
·georget on Apr 8 2014, 23:55.
add access to labels for debug
e4df9145f105
·georget on Apr 8 2014, 23:55.
use new reduced system
132d6485ecf3
·georget on Apr 8 2014, 21:16.
a new reduced system, don't solve explicitely for secodnary aqueous…
a19cea4818a7
·georget on Apr 8 2014, 21:15.
adapt extended system to new hook_start_iteration method
918d946487c3
·georget on Apr 8 2014, 21:14.
improve convergence, tune linesearch to accept a max lambda
c344ec429965
·georget on Apr 8 2014, 21:13.

Apr 7 2014

move specmicp to extended_system
a29e40517129
·georget on Apr 7 2014, 19:47.
be careful of numerical issue when computing loggamma
c3557baf079a
·georget on Apr 7 2014, 03:26.
correct initialization of param_aq
fb498d62c46c
·georget on Apr 7 2014, 03:24.
Documentations : citations and update
c551311e303e
·georget on Apr 7 2014, 00:55.

Apr 6 2014

use cemdata database to perform the computation
255520184d81
·georget on Apr 6 2014, 20:55.
adapt thermodata interface to use database::DataContainer
5c657c42f5ad
·georget on Apr 6 2014, 20:55.
add database management - reducing to canonical form and swap basis
4d14a2cc5b7e
·georget on Apr 6 2014, 20:55.
change name reader; allow non canonical form in database
d1005cb9e234
·georget on Apr 6 2014, 20:55.
new database
e12fbdcee6a7
·georget on Apr 6 2014, 20:55.

Apr 5 2014

add database
0ee505a85b4c
·georget on Apr 5 2014, 20:54.
Documentation
89f89d5696f6
·georget on Apr 5 2014, 18:21.
use MiCPperformance to output return code and nb iterations
c6e81fb01c18
·georget on Apr 5 2014, 02:46.
performance checker
ea53ab775553
·georget on Apr 5 2014, 02:45.
thermocarbo: use new options; logging; and change data
1156811fe485
·georget on Apr 5 2014, 00:28.
add logging in micpsolver
f62817d016a8
·georget on Apr 5 2014, 00:28.

Apr 4 2014

logger
dcc601639650
·georget on Apr 4 2014, 23:49.
ionic strength correction
97461d14639c
·georget on Apr 4 2014, 00:19.

Historycython7534f12303226c56a30cc3c…

Jun 4 2014

Jun 3 2014

Jun 2 2014

May 29 2014

May 20 2014

May 16 2014

May 15 2014

May 3 2014

May 1 2014

Apr 30 2014

Apr 29 2014

Apr 25 2014

Apr 18 2014

Apr 15 2014

Apr 14 2014

Apr 12 2014

Apr 11 2014

Apr 10 2014

Apr 9 2014

Apr 8 2014

Apr 7 2014

Apr 6 2014

Apr 5 2014

Apr 4 2014

History
cython7534f12303226c56a30cc3c…