Diffusion SpecMiCP / ReactMiCP (cython) History

History
cython901e398cf5eb4fdd346b86b…

Apr 8 2015

Remove cython module using the old ReducedSystem
901e398cf5eb
·fabien on Apr 8 2015, 23:01.
First executable commit of the cython module
24b3557bdcb5
·fabien on Apr 8 2015, 22:47.
correct function naming in micpsolver structs
ffb470e98818
·fabien on Apr 8 2015, 22:44.
continue the cython implementation
1bcfe70f1489
·fabien on Apr 8 2015, 15:42.
Add helper meber functions
824f90062e79
·fabien on Apr 8 2015, 15:31.
Add member function to set options in MiCPSolverOptions
0510c2d1f2b1
·fabien on Apr 8 2015, 15:24.
Fixes the eigen include
4787af2cb2cb
·fabien on Apr 8 2015, 15:22.

Apr 6 2015

Start updating the cython module for specmicp
037e16710e65
·fabien on Apr 6 2015, 15:41.
Include two cmake modules for cython
e9e13c1a1fe3
·fabien on Apr 6 2015, 15:38.
Reader : Move implementation details into the cpp file
4cf2a40df164
·fabien on Apr 6 2015, 15:35.

Apr 2 2015

Add a reactive transport example including Fe phases
c386cca6975b
·fabien on Apr 2 2015, 18:59.
Add oxyde as kinetic minerals in cemdata database
e40f6e97269a
·fabien on Apr 2 2015, 18:57.
Comment the carbonation examples
688860f644d0
·fabien on Apr 2 2015, 05:26.
Fixes strange allocation bug in ReactiveTransportRunner
cdf89e2fd60f
·fabien on Apr 2 2015, 05:25.
Add end user include
56a3baf15614
·fabien on Apr 2 2015, 03:56.
Update README.md
430491e14d8a
·fabien on Apr 2 2015, 03:41.
Documentation in src/common.hpp
affc03129ce6
·fabien on Apr 2 2015, 03:40.
Correct the name of the minerals
38a054f9e711
·fabien on Apr 2 2015, 03:03.
Update licence
ed9f62bffad3
·fabien on Apr 2 2015, 02:56.
No diffusion of the electron
d8b65021bdf9
·branch: oxydoreduc
·fabien on Apr 2 2015, 02:34.

Apr 1 2015

Add carbonation example for specmicp using Fe bearing phases
7b0f49c530e7
·fabien on Apr 1 2015, 23:09.
Add test for the oxydoreduction
988370a609fc
·fabien on Apr 1 2015, 23:07.
Add a database test that loads the Cemdata database
7e6021fdbf6d
·fabien on Apr 1 2015, 23:06.
Add the ability to solve oxydoreduction system
ea534669b0e6
·fabien on Apr 1 2015, 23:05.
Add the Faraday constants to the list of constants
9a83589563ca
·fabien on Apr 1 2015, 23:03.
Add AqueousSelector and OxydoSelector
cb51196a93d4
·fabien on Apr 1 2015, 23:02.
Add cemdata.js
522d1d188e48
·fabien on Apr 1 2015, 23:00.
Improve the main CMakeLists.txt
690a91cea2b7
·fabien on Apr 1 2015, 22:59.

Mar 31 2015

Refactor residual and jacobian in specmicp
8d287d0302ef
·fabien on Mar 31 2015, 16:00.
Correct include in micpsolver.inl
4438bed8f0a6
·fabien on Mar 31 2015, 15:59.

Mar 27 2015

Small changes in micpsolver
a915d2a00af6
·fabien on Mar 27 2015, 19:02.
fixes commit 0174eeb
665b1c9415f6
·fabien on Mar 27 2015, 16:10.
Optimize the semismooth reformulation
3f78fff02e69
·fabien on Mar 27 2015, 16:04.

Mar 26 2015

Use the findOpenMP package in the CmakeList file
953d28abf77f
·fabien on Mar 26 2015, 20:41.
Udpdate license text in database module
b264515ec25e
·fabien on Mar 26 2015, 20:31.
Small optimization, avoid checking and scaling the molar volumes too many times…
0174eeb1cf69
·fabien on Mar 26 2015, 18:43.
Intern refactoring of AdimensionalSystem
33d3d8b8a771
·fabien on Mar 26 2015, 15:30.

Mar 25 2015

Update examples
971c8d029f9b
·fabien on Mar 25 2015, 20:39.
Disable bulk copy of variables for now - to fix
fa87e6334e88
·fabien on Mar 25 2015, 20:38.
Update ReactMiCP for the new databse module
3240263f41a0
·fabien on Mar 25 2015, 20:22.
Minor changes/bug fixes in the database module
1cd97637d904
·fabien on Mar 25 2015, 20:20.
Add timers in database test
b8e581491519
·fabien on Mar 25 2015, 20:19.
Small correction to allow compilation with gcc 4.8.3
ac7ea29f1b9b
·georget on Mar 25 2015, 16:18.
The timer is started when initialized
cdb78898dc90
·fabien on Mar 25 2015, 14:55.
Update dependancies in tests/CMakelists, download catch if necessary
ca8840ad97b9
·fabien on Mar 25 2015, 14:54.
comment redefinition of the release flags
0d36c29be443
·fabien on Mar 25 2015, 14:53.
update INSTALL with examples command for cmake
a13a47bb5ca8
·fabien on Mar 25 2015, 14:52.
Update the specmicp tests
cbf1fa082c49
·fabien on Mar 25 2015, 14:50.
Update the databases to include the electron in the basis
5c5454d4c9b4
·fabien on Mar 25 2015, 14:50.
Update the adimensional system for the new database module
c6b716588c1d
·fabien on Mar 25 2015, 14:45.
Bug fixes and minor improvements in the database module
87fc4962ea72
·fabien on Mar 25 2015, 14:38.
remove import of database::Database in src/database.hpp
3db25ff1295e
·fabien on Mar 25 2015, 14:34.
The index_t and EIGEN_DEFAULT_DENSE_INDEX_TYPE is now consistent
c2ae9df66c89
·fabien on Mar 25 2015, 14:13.

Mar 24 2015

Remove all the old code in the reactmicp folder
dfd04be5d63c
·fabien on Mar 24 2015, 19:06.
Remove the ReducedSystem
7f9de8ece968
·fabien on Mar 24 2015, 19:04.
Remove example for the ReducedSystem reactmicp
f2e30c0148d8
·fabien on Mar 24 2015, 19:00.
Remove test for ReducedSystem
0a851fd28c2c
·fabien on Mar 24 2015, 18:59.
Add tests for the new database module
c3defdf79457
·fabien on Mar 24 2015, 18:54.
Improves the database
c2a8ab6f9a8e
·fabien on Mar 24 2015, 18:38.

Mar 19 2015

include half-cells reaction in the database
ce7cf38633f9
·fabien on Mar 19 2015, 19:39.
improve signature of functions in the physics module
aa2cfcd016e3
·fabien on Mar 19 2015, 19:39.
Add NOEXCEPT macor, noexcept if not in debug mode
82d0adb9bd56
·fabien on Mar 19 2015, 19:39.
Improve the OpenMP section
cb15e034fead
·tag: 0.0.2
·fabien on Mar 19 2015, 19:16.

Mar 17 2015

Improve the cythom cmakelist, python 3 compilation still doesn't wok
980ddb553f7b
·fabien on Mar 17 2015, 15:50.
Sligthly imporve the INSTALL file
673c19a9c45f
·fabien on Mar 17 2015, 15:49.
Update the carbonation example to use the new runner class for the reactive…
440944f1045f
·fabien on Mar 17 2015, 15:49.
add a convenience function in specmicp adimensional solver to solve a system
f952caf0c318
·fabien on Mar 17 2015, 15:46.
Add a runner class for the reactive transport solver
a1bb082f067b
·fabien on Mar 17 2015, 15:45.
In reactive transpor solver, return a reference to the timer instead of a copy
c9a42d8c3f55
·fabien on Mar 17 2015, 15:44.
Add the member reset_main_variables in reactmicp::solver::VariablesBase
e5adba3b79c0
·fabien on Mar 17 2015, 15:42.
import reactive transport timestepper
08dbc2f3e912
·fabien on Mar 17 2015, 15:38.
add more access to the starting and ending point of a timer, aslo correct const…
719661d3e345
·fabien on Mar 17 2015, 15:34.
Add and improve functions in the io library
941766fc8a67
·fabien on Mar 17 2015, 15:33.

Mar 13 2015

Update reactive transport examples
70851d283152
·fabien on Mar 13 2015, 04:26.
Update headers in the src/specmicp/adimensional files
e94e903fe893
·fabien on Mar 13 2015, 04:22.
Disable the descent condition in the AdimensionalSystemSolver.
8e74befa1920
·fabien on Mar 13 2015, 04:21.
Add a return value (boolean) in the AdimensionalSystemPCFM::check_validity
5e764b31a7c6
·fabien on Mar 13 2015, 04:18.
Remove the check for Total concentration too small in the reactive transport…
2ab1f72f9891
·fabien on Mar 13 2015, 04:14.
Add member functions in MiCPSolverOptions to help set the options
746e385268f2
·fabien on Mar 13 2015, 04:13.
Bypass the descent condition if the factor is negative in the MiCPsolver
136d82ff2ccb
·fabien on Mar 13 2015, 04:11.
Remove the cut-off for including a component in the total concentration; the…
d16ed536054f
·fabien on Mar 13 2015, 02:55.
Add a threshold for including the component in the computation in…
f5f97272d811
·fabien on Mar 13 2015, 02:53.
update specmicp AdimensionalSystem tests
bf325999f473
·fabien on Mar 13 2015, 02:37.

Mar 12 2015

upate/correct carbonation example
45037ebada12
·fabien on Mar 12 2015, 13:33.

Mar 6 2015

Update the leaching example
0ecb38c075e0
·fabien on Mar 6 2015, 14:44.
Update the carbonation example
db3acd9b0ce6
·fabien on Mar 6 2015, 14:44.
add member function is SaturatedVariables to access main variables directly
331aa30110ba
·fabien on Mar 6 2015, 14:42.

Mar 4 2015

Add a saturated carbonation example
532031755403
·fabien on Mar 4 2015, 19:52.
Minor enhancements in the Timestepper
f26e0452c13c
·fabien on Mar 4 2015, 19:47.
correct generic 1D mesh
64fa3c732f53
·fabien on Mar 4 2015, 19:44.
refectoring of MoMas benchmark
d003a8e04654
·fabien on Mar 4 2015, 05:12.
Add potassium to the cemdata database
9b6952672e10
·fabien on Mar 4 2015, 03:26.

Mar 2 2015

Update the momas benchmark
91a8a4602873
·fabien on Mar 2 2015, 21:36.
Add new ReactiveTransportSolverReturnCode in the IO library
d4f8837fe33a
·fabien on Mar 2 2015, 21:30.
improve detection of problems in the ReactiveTransportSolver
5acd30632a6a
·fabien on Mar 2 2015, 21:29.
Change the message for ErrorMinimized in MiCPSolver
9873b241a642
·fabien on Mar 2 2015, 21:25.
Add a absolute tolerance test for the residuals in the parabolic driver
aa631431a161
·fabien on Mar 2 2015, 21:22.

Feb 28 2015

update examples
414ceaa6732a
·fabien on Feb 28 2015, 23:39.
add more output function
f2a40262416b
·fabien on Feb 28 2015, 23:37.
Add more information about time in ReactiveTransportPerformance
abe3dbcbe88d
·fabien on Feb 28 2015, 23:36.

Historycython901e398cf5eb4fdd346b86b…

Apr 8 2015

Apr 6 2015

Apr 2 2015

Apr 1 2015

Mar 31 2015

Mar 27 2015

Mar 26 2015

Mar 25 2015

Mar 24 2015

Mar 19 2015

Mar 17 2015

Mar 13 2015

Mar 12 2015

Mar 6 2015

Mar 4 2015

Mar 2 2015

Feb 28 2015

History
cython901e398cf5eb4fdd346b86b…