Diffusion SpecMiCP / ReactMiCP (cython) History

History
cythone19767784417d602fa0026a…

Feb 13 2015

update MoMas benchmark database to agree with commit a8c4203
e19767784417
·fabien on Feb 13 2015, 16:14.
Free sorption sites is no longer a component
a8c4203fea6b
·fabien on Feb 13 2015, 16:13.

Feb 11 2015

add some simple tests for AdimKinetics, will add more in the future
9a4089e18a62
·branch: kinetics
·fabien on Feb 11 2015, 15:01.
add a AdimensionalSolver examples / with kinetics
8c94dee2ed89
·fabien on Feb 11 2015, 15:00.
Add the database for the MoMas benchmark, maybe use for other test too
965036a9c569
·fabien on Feb 11 2015, 14:56.
No Ca/Al/SO2 at the boundary, seems to work much better
5b397acac2a4
·fabien on Feb 11 2015, 14:50.
reduce maximum step lenght in adim tests/to match others, remove a cycling…
f683d9d25c24
·fabien on Feb 11 2015, 14:39.
improve AdimKinetic(Euler)Solver, choose DormandPrince as the ODE integrator
26182c883bf1
·fabien on Feb 11 2015, 14:37.

Feb 10 2015

small corrections for the adimensional system with the new sorbed species
8ec8f50ef0fa
·fabien on Feb 10 2015, 21:01.
modification in units::convert_pressure to avoir compiler warning
7ac65cc8ee32
·fabien on Feb 10 2015, 20:53.
add support for sorbed species in AdmiensionalSystem
1af9208c7a4c
·fabien on Feb 10 2015, 17:11.
correct jacobian for the water equation in AdimensionalSystem, fixes issue #25
513ba6bd0ef3
·fabien on Feb 10 2015, 17:09.
add support for sorped species in the database
298190351669
·fabien on Feb 10 2015, 15:22.
small enhancements of specmicp
9290bd437d11
·fabien on Feb 10 2015, 03:12.
add a boolean to check that the solution has been initialized
835f7071e071
·fabien on Feb 10 2015, 03:08.
allow custom initialisation
c0917faf9b6a
·fabien on Feb 10 2015, 03:06.
add kinetics solver for the AdimensionalSystem (issue #15), TO TEST
a388607362fe
·fabien on Feb 10 2015, 02:18.

Feb 6 2015

remove unused struct from saturated_react
a0d7a916d1a1
·fabien on Feb 6 2015, 20:45.
start updating the cython interface
9be560f1edb0
·fabien on Feb 6 2015, 14:46.
update ex_reactmicp_leaching
9ea6b8ee2396
·fabien on Feb 6 2015, 14:32.
correct AdimensionalSystemSolutionExtractor::log_molality_component for water
47a6cfb7136d
·fabien on Feb 6 2015, 14:28.

Feb 5 2015

add a generic Axisymmetric 1D mesh class, in process of resolving issue #13
113faa16267a
·fabien on Feb 5 2015, 21:11.

Feb 4 2015

update examples
7a9771634f6a
·fabien on Feb 4 2015, 14:16.

Feb 3 2015

correct typo in residual water in AdimensionalSystem, fixes bug #20
cd36fb74436f
·fabien on Feb 3 2015, 21:47.
add scaling for the AdimensionalSystem, fixes issue #23
86c34c364f68
·fabien on Feb 3 2015, 17:39.
correct pressure contribution in specmicp, fixes issue #24
50b53a239634
·fabien on Feb 3 2015, 17:35.

Jan 20 2015

Correct complaints of valgrind-memcheck abount non-initialized values
c0560e3c1407
·fabien on Jan 20 2015, 22:56.
fixes issue #19, The desctructor of SparseSolverBase was not virtual
f494edc15db3
·fabien on Jan 20 2015, 22:06.
fixes bug introduced by commit 64b3616, get_performance was removed from…
29b3278d5651
·fabien on Jan 20 2015, 20:07.
Documentation for the adimensionalsystem and associates
056dfbdf23b9
·fabien on Jan 20 2015, 19:34.
documentation and test for the MiCP solver
64b3616eea48
·fabien on Jan 20 2015, 16:37.
Update/improve documentation for the reactmicp::solver namespace and its members
ecc0663ea7ef
·fabien on Jan 20 2015, 15:46.

Jan 19 2015

move test of ODEint solvers from the Cxxtest to the Catch framework, fixes…
78be35d16fbe
·fabien on Jan 19 2015, 19:14.
move micpsolver tests to the Catch framework, instead of the CxxTest framework
8f33b9c54fdb
·fabien on Jan 19 2015, 18:51.
issue #8, all tests compiles
a4ba90c69915
·fabien on Jan 19 2015, 17:22.
all the examples compile correctly
e10c1ed3491b
·fabien on Jan 19 2015, 16:55.
Documentation for specmicp::AdimensionalSystem
19d5b16cc3f1
·fabien on Jan 19 2015, 16:44.
issue #4, change MULTILINE_CPP_BRIEF to NO in the doxygen configuration file
070e54dc9d24
·fabien on Jan 19 2015, 16:44.

Jan 18 2015

include <iostream> for the GMRES solver,m issue #17
14f16a9d1764
·fabien on Jan 18 2015, 00:04.

Jan 17 2015

update dfpmsolver::ParabolicDriver to use the new SparseSolvers of commit…
ef2d31ec34ae
·fabien on Jan 17 2015, 22:35.
modify the sparse solver module to resolve issue #11
a247fbc100c4
·fabien on Jan 17 2015, 22:34.

Jan 16 2015

Recode database test to use the Catch framework instead of CxxTest
bb1015b50ad5
·fabien on Jan 16 2015, 23:03.
Remove test for the OneStepImplicit saturated diffusion system
b7869e7de918
·fabien on Jan 16 2015, 21:37.
documentation
b2bda1a419fd
·fabien on Jan 16 2015, 18:50.
Remove the one step reactive transport system - don't work, don't compile
b9a808db21fb
·branch: fixpoint
·fabien on Jan 16 2015, 16:38.
Improve/clean cmakelist, list requirements/options in INSTALL
4bf2553e54f6
·fabien on Jan 16 2015, 16:34.
Improve leaching example for the new reactive transport solver
f22e7d5e8694
·fabien on Jan 16 2015, 16:18.
Do not update variables if EquilibriumSolver has not converged
9fc5d580b72b
·fabien on Jan 16 2015, 16:18.

Jan 15 2015

Prepare AdimensionalSystem environment for kinetics
c99feaa01903
·fabien on Jan 15 2015, 22:18.
add member function in database::Database to keep only certain minerals (given…
c4a87185190b
·fabien on Jan 15 2015, 22:15.
Restart values for the concentration in AdimensionalSystem is now an…
a3c945176de8
·fabien on Jan 15 2015, 19:16.

Jan 14 2015

add Leaching example for the new system/reactive transport solver
7237ac8fa937
·fabien on Jan 14 2015, 00:27.
Improvements/bug correction in the saturated react system
d4ae324ea89d
·fabien on Jan 14 2015, 00:26.
add test equilibrium stagger in the git history / small correction in…
cd1fb73b0dac
·fabien on Jan 14 2015, 00:20.
Add AdimensionalSystemSolutionModificator, to modify (scaling, removing solid…
26ecea65a83b
·fabien on Jan 14 2015, 00:18.

Jan 12 2015

add test for the equilibrium stagger in saturated_react
a3c35a95c9f4
·fabien on Jan 12 2015, 23:45.
add more test for saturated_react system, correct bugs
0bedb6497e35
·fabien on Jan 12 2015, 22:52.
add some tests for the saturated_react systems, more to come
2408f52593d3
·fabien on Jan 12 2015, 20:55.
Minor\ corrections in SaturatedReact systems
1d57790e5b76
·fabien on Jan 12 2015, 20:53.
A return code was missing in ReactiveTransportSolver::solve_one_iteration
55b82d2b1e21
·fabien on Jan 12 2015, 20:52.
use correct mmember functions in assert in AdimensionalSystem
cefbc702655c
·fabien on Jan 12 2015, 20:49.
Set the return code to the correct value if linesearch has failed in MiCPsolver
87604b01bf0d
·fabien on Jan 12 2015, 20:47.
Start the work on the new SaturatedDiffusion systems for the new reactive…
3c484d96fa9b
·fabien on Jan 12 2015, 17:05.
Correct typo in reactmicp::solver::StaggerReturnCode
edab8e64cbc6
·fabien on Jan 12 2015, 15:21.

Jan 10 2015

improve reactive transport solver
17ac62383dd7
·fabien on Jan 10 2015, 02:29.

Jan 9 2015

add tests for the new flexible reactive transport solver, proof of concept
092c377c7c2a
·fabien on Jan 9 2015, 22:06.
Improve reactive transport solver
6f21451dd340
·fabien on Jan 9 2015, 22:05.
add foundations of the flexible reactive transport solver
a19ce13e1a11
·fabien on Jan 9 2015, 17:45.
modify examples
2c7e1c431676
·fabien on Jan 9 2015, 15:20.

Dec 19 2014

update reactmicp/equilibrium_curve to agree with commit 030defd, rename BC to…
1bd7817be013
·fabien on Dec 19 2014, 21:29.
update examples to agree with commit 030defd, rename BC to constraints in…
c4ac2085a98f
·fabien on Dec 19 2014, 20:06.
update test to agree with commit 030defd, rename BC to constraints in…
7dcd83852458
·fabien on Dec 19 2014, 20:06.
rename BC to constraints in AdimensionalSystem
030defdf3929
·fabien on Dec 19 2014, 20:04.
do not copy the solution in the solution extractor
681e327723b8
·fabien on Dec 19 2014, 19:31.

Dec 16 2014

update adimensional test
9a702fba7e44
·fabien on Dec 16 2014, 15:16.
use previous flux in reactive transport - do not work
6dd908c529b8
·fabien on Dec 16 2014, 15:15.
use correct density at 25C
2898b6821462
·fabien on Dec 16 2014, 15:10.

Dec 15 2014

improve documentation of AdimensionalSystem
6203177d8b3f
·fabien on Dec 15 2014, 19:57.
add test for a saturated system
e9c71b96d952
·fabien on Dec 15 2014, 18:02.
add WaterEquationType to the AdimensionalSystem
067602901bfb
·fabien on Dec 15 2014, 17:59.
improve MiCPsolver, making it possible to disable condition estimation
2c8f021cdfeb
·fabien on Dec 15 2014, 17:53.

Dec 12 2014

improve test of EquilibriumCurve
edda4626caa0
·fabien on Dec 12 2014, 19:46.
add coupler, extractor for equilibrium
4adc6181a531
·fabien on Dec 12 2014, 19:42.
correct size management of the array in Chemictry equilibrium curve
bde740772827
·fabien on Dec 12 2014, 19:33.
improve transport program of reactive transport
3a5d25312f42
·fabien on Dec 12 2014, 19:25.
improve 1D diffusion problem
e1c6af4f4f1b
·fabien on Dec 12 2014, 19:15.

Dec 11 2014

add member to compute volume of a cell inside an element
2c221cb0eb9a
·fabien on Dec 11 2014, 22:10.
correct includes in dfpm/types.hpp header
ad85c18048cb
·fabien on Dec 11 2014, 22:09.

Dec 9 2014

examples forr EquilibriulCurve to reactive transport
ca6efa1a4157
·fabien on Dec 9 2014, 05:16.
start implementation of EquilibriumCurve approad to reactive transport
f96d0f24dfe0
·fabien on Dec 9 2014, 05:15.
add specmicp/adimensional/equilibrium_curve.cpp example
44a03c6fdab1
·fabien on Dec 9 2014, 05:09.
correct examples files to use the dfpm/mesh module
8fd901c33698
·fabien on Dec 9 2014, 05:07.
remove const keyword for the output member
110e0d72687e
·fabien on Dec 9 2014, 05:06.
add src/dfpm/types.hpp in sources
8caac4f45779
·fabien on Dec 9 2014, 05:00.
correct coupling, update water in speciation solver to keep saturation at 1
44f3acfa1b25
·fabien on Dec 9 2014, 04:59.
start implementation of 1d diffusion
cc470b429ffa
·fabien on Dec 9 2014, 04:58.
defaults value for epsilon_jacobian in src/common.hpp
f1765f058b94
·fabien on Dec 9 2014, 04:56.
correct AdimensionalSystemSolver : now, works with 2 or more non active…
c3c6d4e7ad1c
·fabien on Dec 9 2014, 04:46.
correct AdimensionalSystemSolver : now, works with 2 or more non active…
481fe8a4b959
·fabien on Dec 9 2014, 04:40.
add member 'get_units' in units::UnitsBaseClass
2f7ca0ac5ea7
·fabien on Dec 9 2014, 04:38.

Historycythone19767784417d602fa0026a…

Feb 13 2015

Feb 11 2015

Feb 10 2015

Feb 6 2015

Feb 5 2015

Feb 4 2015

Feb 3 2015

Jan 20 2015

Jan 19 2015

Jan 18 2015

Jan 17 2015

Jan 16 2015

Jan 15 2015

Jan 14 2015

Jan 12 2015

Jan 10 2015

Jan 9 2015

Dec 19 2014

Dec 16 2014

Dec 15 2014

Dec 12 2014

Dec 11 2014

Dec 9 2014

History
cythone19767784417d602fa0026a…