Diffusion SpecMiCP / ReactMiCP (dev) History

History
dev367d9d550e9d2c3f882f0ef…

Apr 21 2015

finally, SpecMiCP/ReactMiCP can be installed
367d9d550e9d
·fabien on Apr 21 2015, 05:24.

Apr 20 2015

SpecMiCP_cython handles c++ errors
02e65c604d98
·fabien on Apr 20 2015, 16:57.
Deprecate the total_saturation_{mineral,water}
9cc89d2d9dc1
·fabien on Apr 20 2015, 03:10.
Add a depracation macro
df1297a70e87
·fabien on Apr 20 2015, 03:09.

Apr 19 2015

Update the specmicp.database cython module
4cb4397eda12
·fabien on Apr 19 2015, 23:50.
Update jsoncpp to version 1.6.2
d22a20e5775c
·fabien on Apr 19 2015, 22:01.
Appendix to the database
e16082e00ff6
·fabien on Apr 19 2015, 21:52.
Improve specmicp_cython module
d5f3e4484902
·fabien on Apr 19 2015, 19:33.

Apr 17 2015

Correct the inert volume in the hydration of an oxyde formulation
2092f6d9b914
·fabien on Apr 17 2015, 04:27.
Use a consistent notation for the amorphous species in the cemdata database
196e66f8c73c
·fabien on Apr 17 2015, 04:26.
night doc, duck duck
c67f9def418d
·fabien on Apr 17 2015, 04:26.
Evening doc, tired duck
c017dd3a0e61
·fabien on Apr 17 2015, 01:55.

Apr 16 2015

Afternoon doc, happy duck
ca9410fe623d
·fabien on Apr 16 2015, 21:45.
Morning doc welcomes duck
d204ff482220
·fabien on Apr 16 2015, 15:15.
Documentation
d242af75fe48
·fabien on Apr 16 2015, 05:32.
README.md edited online with Bitbucket
86effa9b0933
·specmicp on Apr 16 2015, 02:08.
Update the README.md
20c3769905df
·fabien on Apr 16 2015, 02:00.

Apr 15 2015

License update before release
b174f1ddf352
·tag: 0.0.3
·fabien on Apr 15 2015, 22:11.
Documentation for the database/species module
94f086f45381
·fabien on Apr 15 2015, 04:29.
The hashing fn does not be to be in every list
9641dcf37708
·fabien on Apr 15 2015, 04:02.

Apr 13 2015

Hydrates a cement with its formulation in oxyde
defd29f146c3
·fabien on Apr 13 2015, 22:49.
Update cemdata database
47bfc4b94709
·fabien on Apr 13 2015, 22:47.
Minor fixes and updates in cython module
fe96a0546924
·fabien on Apr 13 2015, 17:02.
Continue refactoring of Database reader
cfebef7a040e
·fabien on Apr 13 2015, 04:36.
Refactor database reader
14493d59dde5
·fabien on Apr 13 2015, 00:05.

Apr 12 2015

Improve consistency of function naming
d4be19a55956
·fabien on Apr 12 2015, 22:40.
Everything compiles \o/
94fa7a141211
·fabien on Apr 12 2015, 22:24.
Remove test of the old reactmicp solver
630710becb73
·fabien on Apr 12 2015, 22:22.

Apr 11 2015

Add a python module to compute cement hydration
1ac061b7370f
·fabien on Apr 11 2015, 22:36.
Flag Goethite and Hematite as kinetic species
3e6666c597f4
·fabien on Apr 11 2015, 22:30.
Minor fixes in the c++ SpecMiCP API
a5a9ab80bdf3
·fabien on Apr 11 2015, 22:29.

Apr 10 2015

Merge branch 'cython'
c4c7e54e6efa
·fabien on Apr 10 2015, 05:17.
Add access to the logger in the cython module
4b4cc27e3ddb
·branch: cython
·fabien on Apr 10 2015, 05:17.
Add helper function to initialize the solver
9c778f32ba82
·fabien on Apr 10 2015, 05:14.
Minor fixed in the main CMakeLists
72b4f0f12aa9
·fabien on Apr 10 2015, 04:23.
lots of minor fixes and documentation in the cython module
307fe9844151
·fabien on Apr 10 2015, 04:18.
Solution can return the vector of main solution
698bdbf6176e
·fabien on Apr 10 2015, 03:59.

Apr 8 2015

Remove cython module using the old ReducedSystem
901e398cf5eb
·fabien on Apr 8 2015, 23:01.
First executable commit of the cython module
24b3557bdcb5
·fabien on Apr 8 2015, 22:47.
correct function naming in micpsolver structs
ffb470e98818
·fabien on Apr 8 2015, 22:44.
continue the cython implementation
1bcfe70f1489
·fabien on Apr 8 2015, 15:42.
Add helper meber functions
824f90062e79
·fabien on Apr 8 2015, 15:31.
Add member function to set options in MiCPSolverOptions
0510c2d1f2b1
·fabien on Apr 8 2015, 15:24.
Fixes the eigen include
4787af2cb2cb
·fabien on Apr 8 2015, 15:22.

Apr 6 2015

Start updating the cython module for specmicp
037e16710e65
·fabien on Apr 6 2015, 15:41.
Include two cmake modules for cython
e9e13c1a1fe3
·fabien on Apr 6 2015, 15:38.
Reader : Move implementation details into the cpp file
4cf2a40df164
·fabien on Apr 6 2015, 15:35.

Apr 5 2015

New value to choose different porosities in the reactive transport carbonation…
5ba6971de02e
·fabien on Apr 5 2015, 19:43.

Apr 2 2015

Add a reactive transport example including Fe phases
c386cca6975b
·fabien on Apr 2 2015, 18:59.
Add oxyde as kinetic minerals in cemdata database
e40f6e97269a
·fabien on Apr 2 2015, 18:57.
Comment the carbonation examples
688860f644d0
·fabien on Apr 2 2015, 05:26.
Fixes strange allocation bug in ReactiveTransportRunner
cdf89e2fd60f
·fabien on Apr 2 2015, 05:25.
Add end user include
56a3baf15614
·fabien on Apr 2 2015, 03:56.
Update README.md
430491e14d8a
·fabien on Apr 2 2015, 03:41.
Documentation in src/common.hpp
affc03129ce6
·fabien on Apr 2 2015, 03:40.
Correct the name of the minerals
38a054f9e711
·fabien on Apr 2 2015, 03:03.
Update licence
ed9f62bffad3
·fabien on Apr 2 2015, 02:56.
No diffusion of the electron
d8b65021bdf9
·branch: oxydoreduc
·fabien on Apr 2 2015, 02:34.

Apr 1 2015

Add carbonation example for specmicp using Fe bearing phases
7b0f49c530e7
·fabien on Apr 1 2015, 23:09.
Add test for the oxydoreduction
988370a609fc
·fabien on Apr 1 2015, 23:07.
Add a database test that loads the Cemdata database
7e6021fdbf6d
·fabien on Apr 1 2015, 23:06.
Add the ability to solve oxydoreduction system
ea534669b0e6
·fabien on Apr 1 2015, 23:05.
Add the Faraday constants to the list of constants
9a83589563ca
·fabien on Apr 1 2015, 23:03.
Add AqueousSelector and OxydoSelector
cb51196a93d4
·fabien on Apr 1 2015, 23:02.
Add cemdata.js
522d1d188e48
·fabien on Apr 1 2015, 23:00.
Improve the main CMakeLists.txt
690a91cea2b7
·fabien on Apr 1 2015, 22:59.

Mar 31 2015

Refactor residual and jacobian in specmicp
8d287d0302ef
·fabien on Mar 31 2015, 16:00.
Correct include in micpsolver.inl
4438bed8f0a6
·fabien on Mar 31 2015, 15:59.

Mar 27 2015

Small changes in micpsolver
a915d2a00af6
·fabien on Mar 27 2015, 19:02.
fixes commit 0174eeb
665b1c9415f6
·fabien on Mar 27 2015, 16:10.
Optimize the semismooth reformulation
3f78fff02e69
·fabien on Mar 27 2015, 16:04.

Mar 26 2015

Use the findOpenMP package in the CmakeList file
953d28abf77f
·fabien on Mar 26 2015, 20:41.
Udpdate license text in database module
b264515ec25e
·fabien on Mar 26 2015, 20:31.
Small optimization, avoid checking and scaling the molar volumes too many times…
0174eeb1cf69
·fabien on Mar 26 2015, 18:43.
Intern refactoring of AdimensionalSystem
33d3d8b8a771
·fabien on Mar 26 2015, 15:30.

Mar 25 2015

Update examples
971c8d029f9b
·fabien on Mar 25 2015, 20:39.
Disable bulk copy of variables for now - to fix
fa87e6334e88
·fabien on Mar 25 2015, 20:38.
Update ReactMiCP for the new databse module
3240263f41a0
·fabien on Mar 25 2015, 20:22.
Minor changes/bug fixes in the database module
1cd97637d904
·fabien on Mar 25 2015, 20:20.
Add timers in database test
b8e581491519
·fabien on Mar 25 2015, 20:19.
Small correction to allow compilation with gcc 4.8.3
ac7ea29f1b9b
·georget on Mar 25 2015, 16:18.
The timer is started when initialized
cdb78898dc90
·fabien on Mar 25 2015, 14:55.
Update dependancies in tests/CMakelists, download catch if necessary
ca8840ad97b9
·fabien on Mar 25 2015, 14:54.
comment redefinition of the release flags
0d36c29be443
·fabien on Mar 25 2015, 14:53.
update INSTALL with examples command for cmake
a13a47bb5ca8
·fabien on Mar 25 2015, 14:52.
Update the specmicp tests
cbf1fa082c49
·fabien on Mar 25 2015, 14:50.
Update the databases to include the electron in the basis
5c5454d4c9b4
·fabien on Mar 25 2015, 14:50.
Update the adimensional system for the new database module
c6b716588c1d
·fabien on Mar 25 2015, 14:45.
Bug fixes and minor improvements in the database module
87fc4962ea72
·fabien on Mar 25 2015, 14:38.
remove import of database::Database in src/database.hpp
3db25ff1295e
·fabien on Mar 25 2015, 14:34.
The index_t and EIGEN_DEFAULT_DENSE_INDEX_TYPE is now consistent
c2ae9df66c89
·fabien on Mar 25 2015, 14:13.

Mar 24 2015

Remove all the old code in the reactmicp folder
dfd04be5d63c
·fabien on Mar 24 2015, 19:06.
Remove the ReducedSystem
7f9de8ece968
·fabien on Mar 24 2015, 19:04.
Remove example for the ReducedSystem reactmicp
f2e30c0148d8
·fabien on Mar 24 2015, 19:00.
Remove test for ReducedSystem
0a851fd28c2c
·fabien on Mar 24 2015, 18:59.
Add tests for the new database module
c3defdf79457
·fabien on Mar 24 2015, 18:54.
Improves the database
c2a8ab6f9a8e
·fabien on Mar 24 2015, 18:38.

Mar 19 2015

include half-cells reaction in the database
ce7cf38633f9
·fabien on Mar 19 2015, 19:39.
improve signature of functions in the physics module
aa2cfcd016e3
·fabien on Mar 19 2015, 19:39.
Add NOEXCEPT macor, noexcept if not in debug mode
82d0adb9bd56
·fabien on Mar 19 2015, 19:39.

Historydev367d9d550e9d2c3f882f0ef…

Apr 21 2015

Apr 20 2015

Apr 19 2015

Apr 17 2015

Apr 16 2015

Apr 15 2015

Apr 13 2015

Apr 12 2015

Apr 11 2015

Apr 10 2015

Apr 8 2015

Apr 6 2015

Apr 5 2015

Apr 2 2015

Apr 1 2015

Mar 31 2015

Mar 27 2015

Mar 26 2015

Mar 25 2015

Mar 24 2015

Mar 19 2015

History
dev367d9d550e9d2c3f882f0ef…