Diffusion SpecMiCP / ReactMiCP (kinetics) History

History
kinetics64b3616eea487fc41e9f4a9…

Nov 23 2014

improve algorithm
276009d19c18
·fabien on Nov 23 2014, 22:04.
add a method to check if there is any solid in the speciation solution
fd81222c02eb
·fabien on Nov 23 2014, 22:03.

Nov 22 2014

correct compilation error link to namespace
0d2b686c39c7
·fabien on Nov 22 2014, 19:46.
Merge branch 'kinetics'
01a5614ae626
·fabien on Nov 22 2014, 19:38.
Merged master into kinetics
b72295e4c0ac
·georget on Nov 22 2014, 19:36.
update leaching example
98988b02e071
·georget on Nov 22 2014, 19:32.
correct reactive transport solver
bdfe852fa9b2
·georget on Nov 22 2014, 19:32.
Allow for truncated axisymmetric mesh
9d76e2cc297d
·georget on Nov 22 2014, 19:30.
small corrections in specmicp ReducedSystem and associate
3a8861713bdf
·fabien on Nov 22 2014, 19:25.
Add AdimensionnalSystemSolutionExtractor
1449c5f7ed20
·fabien on Nov 22 2014, 19:24.
add density of water function (to improve) and use scalar_t for the real type
8acca7ec6e52
·fabien on Nov 22 2014, 01:28.
add more methods to the database which can take units as argument
81a129921f3f
·fabien on Nov 22 2014, 01:27.

Nov 21 2014

add more tests for adimensional system
522419257276
·fabien on Nov 21 2014, 16:49.
include decimeter into computation, + better restarting guess
225e2990dde6
·fabien on Nov 21 2014, 16:48.
remove jsoncpp from the library we link too, it is already included
87334ca27afe
·fabien on Nov 21 2014, 16:43.
perturb jacobian if it cannot be factorized when no scaling is used - same as…
dd32bf844e0c
·fabien on Nov 21 2014, 16:41.
improve problem solver
7976b7effc36
·fabien on Nov 21 2014, 16:12.
add missing dependancy for src/utils/log.hpp, order of include does not matter…
d4534f7eaf1e
·fabien on Nov 21 2014, 16:11.
add decimeter as a length unit (for liter)
101e1e70dfc5
·fabien on Nov 21 2014, 16:08.

Nov 20 2014

add solver for Adimensional system and Dissolver, to set up problem
d1998e3678d3
·fabien on Nov 20 2014, 02:41.
add a molar_mass_basis function adjustable to the unit in the database
c1d916f6a6a8
·fabien on Nov 20 2014, 02:37.

Nov 19 2014

rename adim into adimensional system
e2078e2d32ae
·fabien on Nov 19 2014, 16:42.
Remove unused header file in Reduced system
9192af49fe62
·fabien on Nov 19 2014, 16:24.
add support for units in adimensional system
99eb486901e6
·fabien on Nov 19 2014, 16:21.
add support for units in database
a80d7faccc53
·fabien on Nov 19 2014, 16:19.
add supports for units
55250fbca69d
·fabien on Nov 19 2014, 16:18.

Nov 18 2014

implementation of adimensional system and test
477470dc6bc8
·fabien on Nov 18 2014, 23:54.
set porosity to the good value
c247cad865b6
·fabien on Nov 18 2014, 15:13.

Nov 17 2014

update leaching example
c37a53cf2ee0
·fabien on Nov 17 2014, 21:01.
correct naming in uniform mesh 1D
4905ca8043ef
·fabien on Nov 17 2014, 20:58.
improve reactive solver
ab9678d714b1
·fabien on Nov 17 2014, 20:56.
style
811727685964
·fabien on Nov 17 2014, 20:56.

Nov 16 2014

Correct/improve equilibrium data
6da64e226377
·fabien on Nov 16 2014, 19:55.

Nov 13 2014

update carbonation and leaching example to use the latest developments
dc0a7d7b0a80
·fabien on Nov 13 2014, 00:57.
use temporary variables for the computation
75e069a6735b
·fabien on Nov 13 2014, 00:56.
add support for gmres in sparse_solver module
f67b525bf55f
·fabien on Nov 13 2014, 00:55.
use new Performance Structure/ PErformance handler and Options handler in…
d9b9320c1f9b
·fabien on Nov 13 2014, 00:54.
add options to reset the options in Options handler
736804e88863
·fabien on Nov 13 2014, 00:48.
correct boost include dir varaibles in CMakelist.txt
8d8999e139be
·fabien on Nov 13 2014, 00:47.
Add PerformanceHandler on the model of OptionsHandler
a4f20df9b49f
·fabien on Nov 13 2014, 00:46.
rename file containing the reactive transport solver options
25b4a7a686ca
·fabien on Nov 13 2014, 00:45.

Nov 11 2014

update examples for reactmicp
5246c20b3234
·fabien on Nov 11 2014, 22:04.
improve reactmicp
e1f224c238f0
·fabien on Nov 11 2014, 22:04.
improve kinetic system
86887f7bc2f2
·fabien on Nov 11 2014, 22:03.
add computation of total concentrations in equilibrium data
05109a387e26
·fabien on Nov 11 2014, 22:02.
correct strang linesearch
89ad784609cf
·fabien on Nov 11 2014, 22:01.
update cemdata database for new version of jsoncpp
d36d2c5a0a89
·fabien on Nov 11 2014, 22:00.
update database reader to use the 3d party jsoncpp lib
71533d2f738a
·fabien on Nov 11 2014, 21:59.
Update Cmakelist, easier to compile in ohter system (i.e. denali)
2763d88b9342
·fabien on Nov 11 2014, 21:58.

Nov 7 2014

add kinetic solver - to be improved
bc9b1984b554
·fabien on Nov 7 2014, 19:07.
update/improve Runge-Kutta solver
76335401d226
·fabien on Nov 7 2014, 19:06.
options to enable/disable nonmonotone linesearch
f6de050d917e
·fabien on Nov 7 2014, 18:59.
add base class to handle options
d6ddcf0a9bd2
·fabien on Nov 7 2014, 18:58.

Oct 28 2014

start implementing kinetics solver
2f65d5a63c08
·fabien on Oct 28 2014, 20:44.
clean ode integrator
250e37bca411
·fabien on Oct 28 2014, 15:28.

Oct 26 2014

update cython interface to use the licit charge conservation equation
0b9e18fb7d56
·fabien on Oct 26 2014, 19:45.
add explicit charge conservation in ReducedSystem
bbb049d91863
·fabien on Oct 26 2014, 19:16.
undef INFO macro, specmicp logger's INFO is the correct one, not the one by…
29fe36a29e5a
·fabien on Oct 26 2014, 00:32.
move and try improving sparse solver tools
b86528d727b5
·fabien on Oct 26 2014, 00:03.

Oct 25 2014

add reactive transport neutrality solver, and update transport program and the…
6d08d8744732
·fabien on Oct 25 2014, 22:31.
add transport_parameters_base, to share porosity and have only one variables
745d2292fc54
·fabien on Oct 25 2014, 22:29.
set update check to be at machine epsilon in secondary variables computation
8ce74ad5e3d5
·fabien on Oct 25 2014, 22:24.
improve drivers
849e20a62100
·fabien on Oct 25 2014, 22:22.

Oct 22 2014

correct equilibrium_date (int -> index_t)
7135b65ac516
·fabien on Oct 22 2014, 17:43.
update program, coupler tests and examples to use new features of dfpm solver
6c35d421db39
·fabien on Oct 22 2014, 17:41.
better scaling and velocity handling
a2c41c6968cc
·fabien on Oct 22 2014, 17:39.

Oct 21 2014

lots of small corrections
7009d71a1296
·fabien on Oct 21 2014, 21:38.
modify jacobian computation in electroneutrality program
0e24a03b71fa
·fabien on Oct 21 2014, 21:35.
add scaling to dfpmsolver
6bc8e317a3ae
·fabien on Oct 21 2014, 21:33.

Oct 20 2014

add electroneutrality transport program
ab2944bc8002
·fabien on Oct 20 2014, 23:03.
add minimal support for quasi Newton iterations in parabolic solver
dd35febf8e48
·fabien on Oct 20 2014, 22:54.
add strang linesearch into parabolic driver
e64992a2bc6c
·fabien on Oct 20 2014, 16:28.

Oct 15 2014

start work on a the transport oslver with neutrality
e882181496b7
·fabien on Oct 15 2014, 23:16.

Oct 10 2014

adapt reduce_system_Solver to allow minerals that can't dissolve
f42f76860daf
·fabien on Oct 10 2014, 20:07.
add support for not dissolving/not precipitating minerals in database
4607780abc35
·fabien on Oct 10 2014, 19:51.

Oct 9 2014

reduce header dependancy
9ac10ec69a99
·fabien on Oct 9 2014, 04:39.
add again the contribution of the descent step direction, change dection of…
e72e464ed90b
·fabien on Oct 9 2014, 03:31.
use typedef
69f1f340a8f5
·fabien on Oct 9 2014, 02:43.

Oct 8 2014

add example directory
da3d68efcce0
·fabien on Oct 8 2014, 22:06.
correct name of reactmicp test folder to tests/reactmicp
afebadac83de
·fabien on Oct 8 2014, 20:21.
add axissymmetric mesh 1d, one file per mesh, add reactmicp/mesh.hpp
a3fe40ba7210
·fabien on Oct 8 2014, 20:19.
correct type in safeguard
d7e3744afdfe
·fabien on Oct 8 2014, 16:57.
Prepare mesh module for asymmetric mesh
a82ae4d34189
·fabien on Oct 8 2014, 16:57.
add transport options into reactive transport options
dbcf1c3de1b8
·fabien on Oct 8 2014, 16:45.
detect linesearch failure in MiCPSolver, which allow restart in…
e5216c0292f7
·fabien on Oct 8 2014, 16:34.

Oct 6 2014

delete previous files added by mistake
a70d03795fe6
·fabien on Oct 6 2014, 21:17.
Merge branch 'reactivetransport' of bitbucket.org:fabieng/specmicp into…
48eb4f5d4263
·fabien on Oct 6 2014, 21:14.
update database, micpsolver and specmicp to use common.hpp
c7ac0a493911
·fabien on Oct 6 2014, 21:13.
update database, micpsolver and specmicp to use common.hpp
032d87790f74
·fabien on Oct 6 2014, 21:11.
modify reactmicp and dfpmsolver to use common.hpp
c46a22fd727b
·fabien on Oct 6 2014, 19:19.
modify equilibrium data so it uses the new common.hpp
a04acf96600a
·fabien on Oct 6 2014, 15:31.
add common.hpp, modify database module to use it
eb7779e20fdf
·fabien on Oct 6 2014, 15:30.

Oct 3 2014

add cmakefile in directory test
191d56f41074
·fabien on Oct 3 2014, 16:28.
remove unecessary files
e5484eae1665
·fabien on Oct 3 2014, 00:36.
improve fixed-point iteration solver
1461da1319e9
·fabien on Oct 3 2014, 00:30.

Oct 1 2014

SIA reactive transport start to work
83e1af765087
·fabien on Oct 1 2014, 19:37.
add scaling method in EquilibriumState
f0bae6f199e0
·fabien on Oct 1 2014, 19:34.
add method to compute residuals from outside, and adjust logging message
48743d675901
·fabien on Oct 1 2014, 19:33.

Sep 28 2014

start working on BCs and ther applications
49aeec52193c
·fabien on Sep 28 2014, 23:38.
update and coupling utils in SIASaturatedVariables
a68894083238
·fabien on Sep 28 2014, 20:16.

Historykinetics64b3616eea487fc41e9f4a9…

Nov 23 2014

Nov 22 2014

Nov 21 2014

Nov 20 2014

Nov 19 2014

Nov 18 2014

Nov 17 2014

Nov 16 2014

Nov 13 2014

Nov 11 2014

Nov 7 2014

Oct 28 2014

Oct 26 2014

Oct 25 2014

Oct 22 2014

Oct 21 2014

Oct 20 2014

Oct 15 2014

Oct 10 2014

Oct 9 2014

Oct 8 2014

Oct 6 2014

Oct 3 2014

Oct 1 2014

Sep 28 2014

History
kinetics64b3616eea487fc41e9f4a9…