Diffusion SpecMiCP / ReactMiCP (master) History

History
master5f551f547deb0154aea0ad9…

Nov 7 2017

docker: update docker files
5f551f547deb
·georget on Nov 7 2017, 17:25.
test:fix move to Catch2
d4fc19a685a4
·georget on Nov 7 2017, 16:02.
build:fix fix the fix for hdf5
ae89bd4c49f6
·georget on Nov 7 2017, 16:00.

Nov 1 2017

build:fix use correct hdf5 library path
fcd46f4bbaa8
·georget on Nov 1 2017, 15:53.
build:minor remove gcc7 warning with eigen includes
cb0ab9a56b35
·georget on Nov 1 2017, 15:52.

Oct 31 2017

build:fix PGO optimization
50d9a67908d3
·georget on Oct 31 2017, 13:18.
fix: install specimcp_common/config.h header
dee7f564bf24
·georget on Oct 31 2017, 13:16.

Oct 30 2017

build:fix be sure to pass EIGEN3_UNSUPPORTED_FOUND definition
45799c295e84
·georget on Oct 30 2017, 09:30.
dfpm:fix:minor correct typo
4fcb60e988fc
·georget on Oct 30 2017, 09:29.

Oct 29 2017

Merge branch 'master' of bitbucket.org:specmicp/specmicp
52bed7d1d852
·georget on Oct 29 2017, 18:32.
build:feature add option to use lapacke in Eigen
3bbaea7497b8
·georget on Oct 29 2017, 18:30.

Oct 27 2017

build: fix yaml import target for cmake < 3.6
c8b8d225dd2d
·georget on Oct 27 2017, 18:12.
Some more comments
921a58bdaf61
·georget on Oct 27 2017, 18:06.

Sep 13 2017

fix:build fix typo in package config file
7bba7974bc8a
·georget on Sep 13 2017, 17:15.
fix:eigen fix sparse_lu module
d2545c482392
·georget on Sep 13 2017, 16:24.
build:fix let's fix the examples
a36c9e0601c1
·georget on Sep 13 2017, 12:54.
build:fix now it's the turn of bin/tests and benchmarks
d796dbb0343c
·georget on Sep 13 2017, 12:23.
build:fix fix dfpm dependancy to yaml-cpp
2af1350d30dd
·georget on Sep 13 2017, 11:44.
build:fix one more for the road baby
9e31d0b9115e
·georget on Sep 13 2017, 11:40.
build:fix add PkgConfig::YAML target for old cmake
b792a2956ec6
·georget on Sep 13 2017, 11:21.
build:fix database uses plain yaml interface
25c945ad9a59
·georget on Sep 13 2017, 11:05.

Sep 12 2017

build:fix use imported hdf5 path, #blamedebian
6357db487983
·georget on Sep 12 2017, 16:51.
build:fix fix hdf5 include dirs
fd1f6982eaf8
·georget on Sep 12 2017, 16:34.
build:fix well...
e7d68c9347c5
·georget on Sep 12 2017, 16:28.
build:fix add yaml include dirs #blame-debian
b928052f5fbc
·georget on Sep 12 2017, 16:20.
build: fix the fix, std(11)(14) compilation
569af6df0266
·georget on Sep 12 2017, 15:58.
build: fix main CMakeLists for cmake <3.8
40b83bbfcf6f
·georget on Sep 12 2017, 15:22.
build: Add SpecMiCPConfig.cmake : package file
990fa8a6d5ec
·georget on Sep 12 2017, 13:20.

Sep 11 2017

build: refactor cmake file for cmake config file
9f0bfa6957ca
·georget on Sep 11 2017, 15:59.

Aug 22 2017

doc: More documentation !
4728ae8e7325
·georget on Aug 22 2017, 22:03.

Aug 4 2017

fix propagates typo correction
ca7b5e361a03
·georget on Aug 4 2017, 19:12.
build: correct lto for clang
af5dbe8741b3
·georget on Aug 4 2017, 19:02.
Documentation run
f7c95635bdac
·georget on Aug 4 2017, 18:52.

May 16 2017

fix: compilation with clang++
b4fb4366dd98
·georget on May 16 2017, 22:57.
minor: complete specmicp bin to match unsaturated
0a6168e296d9
·georget on May 16 2017, 19:57.

Apr 28 2017

minor: format fix
338641c069f9
·georget on Apr 28 2017, 20:34.
fix:test correct specmicp_bin arguments
c0c0ab67b44e
·georget on Apr 28 2017, 20:18.
common: fix cli parser backend
e6c26c6b2885
·georget on Apr 28 2017, 20:15.

Apr 21 2017

specmicp:bin update to match reactmicp-unsaturated
c0da2ae5f913
·georget on Apr 21 2017, 20:18.
database: add ENV reader for db
65d091e2f810
·georget on Apr 21 2017, 20:16.

Apr 20 2017

common:log correct segfault of if no all_io_files
0fc353dd99de
·georget on Apr 20 2017, 17:47.

Apr 18 2017

common: Add io files tracker
6ab3d4f897e0
·georget on Apr 18 2017, 23:01.
reactmicp:runner return _iter filepath
7689995362b8
·georget on Apr 18 2017, 22:49.
minor:reactmicp:unsaturated add useful comment on variables creation
370081051f4e
·georget on Apr 18 2017, 22:44.
Correct data and time parsing for DST
2919173a8b48
·georget on Apr 18 2017, 22:06.

Mar 13 2017

fix:unsaturated read inert_volume_fractio from hdf5 file
8044abc08d5b
·georget on Mar 13 2017, 18:40.

Mar 7 2017

common:io add a file to register all files
ff4beacfbb0d
·georget on Mar 7 2017, 19:45.
common: add read date/item string
c5793433c3d6
·georget on Mar 7 2017, 19:43.

Feb 27 2017

common: add to filesystem api
0f32942e254a
·georget on Feb 27 2017, 17:39.
log: add function to log error and throw runtime_error
d9ee766dbb95
·georget on Feb 27 2017, 17:31.

Feb 21 2017

common: complete HDF5Timesteps API
8e3336821374
·georget on Feb 21 2017, 20:52.
conf:database allow to turn off check_compo in database
91d356fc6d3f
·georget on Feb 21 2017, 20:43.
bin:reactmicp fix gas equation configuration
c0c8d2fa8f10
·georget on Feb 21 2017, 20:33.
bin:reactmicp Use current directory to check for database
aa1e0f666fc1
·georget on Feb 21 2017, 20:20.

Feb 14 2017

fix: update specmicp bin to print path to db is solution
dea414652a6e
·georget on Feb 14 2017, 22:01.
test:fix test due to removal of adim/adim_saver
3392140f93e9
·georget on Feb 14 2017, 15:18.

Feb 13 2017

specmicp: fix parsing database
994e96f2d151
·georget on Feb 13 2017, 23:57.
fix:database do not use metadata in database hash
8879040f78fc
·georget on Feb 13 2017, 23:46.
specmicp:io fix read/save solution to yaml file
60df8d7802f5
·georget on Feb 13 2017, 20:49.

Feb 3 2017

specmicp: move AdimSolutionSolver to specmicp::io
c0bc1498b349
·georget on Feb 3 2017, 17:00.

Jan 27 2017

test fix condition number test
5d9a47e27ccb
·georget on Jan 27 2017, 22:04.
minor: init some values in yaml reader
46885de5dc06
·georget on Jan 27 2017, 22:01.
fix parsing water equation in yaml file
7a9fcae060d9
·georget on Jan 27 2017, 21:57.
minor:specmicp print water equation
81053b2a4950
·georget on Jan 27 2017, 21:51.
fix build to use config yaml lib
9e522bc9887f
·georget on Jan 27 2017, 21:48.
specmicp: fix uninitialized variables
a30360d1e053
·georget on Jan 27 2017, 21:33.

Jan 4 2017

specmicp fix add_<> function in reactant_box
91703167680d
·georget on Jan 4 2017, 13:35.
build: update INSTALL file
7605fc589f4d
·georget on Jan 4 2017, 10:45.
build: fix HDF5 include dirs
384f726ab058
·georget on Jan 4 2017, 10:33.

Jan 3 2017

Fix for build with gcc 4.9.2 (debian 8)
a8288920e6fe
·georget on Jan 3 2017, 14:34.

Nov 23 2016

fix:specmicp correct porosity computation in residual
c3cae15edbf6
·georget on Nov 23 2016, 16:21.
minor:specmicp initialization random generator
42d1352287f2
·georget on Nov 23 2016, 16:18.
fix:specmicp : correct C->K conversion
4e045d7518d2
·georget on Nov 23 2016, 16:16.

Oct 4 2016

minor: add configuration log for no_precipitation
06af08aa99ce
·georget on Oct 4 2016, 19:22.

Sep 30 2016

minor:specmicp add function for cython glue
ee286ee159df
·georget on Sep 30 2016, 21:44.

Sep 21 2016

Merge branch 'specmicp/supersaturation'
122408819b15
·georget on Sep 21 2016, 19:30.
reactmicp: Add constraint to remove the precipitation of a mineral
37c71514d885
·georget on Sep 21 2016, 19:16.
specmicp: fix no precipitation in adim solver
539807e728a9
·georget on Sep 21 2016, 19:14.
debug: print the current residuals
05066e4d960f
·georget on Sep 21 2016, 19:12.
unsaturated: add residuals in post_residuals_impl
30a1dd687101
·georget on Sep 21 2016, 19:09.
minor: fix dfpm configuration print
395d9580f23b
·georget on Sep 21 2016, 19:04.

Sep 19 2016

specmicp: add mineral upper bound in ReactantBox
166fda7bb141
·georget on Sep 19 2016, 03:39.

Sep 18 2016

micpsolver: clean BoxVI code
f451f96e739a
·georget on Sep 18 2016, 16:17.
specmicp solver : add upper bound on minerals
4837d2ea3d06
·georget on Sep 18 2016, 04:18.
micpsolver : add box constrained VI solver
b33545f17075
·georget on Sep 18 2016, 04:14.

Aug 30 2016

Merge branch 'master' of bitbucket.org:specmicp/specmicp
a39bd5f94ba0
·georget on Aug 30 2016, 19:37.
specmicp: add configuration for fixed saturation equation
97deef116070
·georget on Aug 30 2016, 19:34.
specmicp: Add a fixed saturation equation
5821dfca248c
·georget on Aug 30 2016, 17:05.

Aug 8 2016

minor:fix:analyser:short_iter
5f2ae1e8386e
·georget on Aug 8 2016, 15:34.
analyser:short_iter minor fix + install script
e5d9004355da
·georget on Aug 8 2016, 15:17.

Aug 3 2016

reactmicp: add script to analyse iter file
005aff7b17ee
·georget on Aug 3 2016, 22:03.
minor:fix:reactmicp clean whitespaces is iter output
357c78b974d0
·georget on Aug 3 2016, 17:18.

Jul 29 2016

specmicp Vectorise debye-huckel computation
b65fcb5110b5
·georget on Jul 29 2016, 21:53.
fix:build give absolute path to dynamic loader
3b964098d05a
·georget on Jul 29 2016, 16:12.
Fix:build typo in FindEigen3Unsupported
6b4d3b10a3a8
·georget on Jul 29 2016, 15:03.

Jul 22 2016

fix:examples : stay way from optional stuff
913e1b986ba3
·georget on Jul 22 2016, 16:07.
fix: add missing compilation headers
e9389b3fb332
·georget on Jul 22 2016, 16:05.

Jul 20 2016

tests:sparse_solver test pivots for sparseQR
beea2d6947f7
·georget on Jul 20 2016, 19:02.
add:dpfm configure/check pivots threshold
949704b848f1
·georget on Jul 20 2016, 17:53.
add:sparse_solver pivots checking in QR solver
41d623add9a4
·georget on Jul 20 2016, 17:30.

Historymaster5f551f547deb0154aea0ad9…

Nov 7 2017

Nov 1 2017

Oct 31 2017

Oct 30 2017

Oct 29 2017

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Nov 23 2016

Oct 4 2016

Sep 30 2016

Sep 21 2016

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Jul 20 2016

History
master5f551f547deb0154aea0ad9…