Diffusion SpecMiCP / ReactMiCP (master) History

History
mastera23dacbe7335c3e28b04514…

May 4 2016

benchmark: add specmicp solver benchmark
a23dacbe7335
·georget on May 4 2016, 14:51.
minor:test remove one use of depecrated function
dc2143f019c5
·georget on May 4 2016, 14:50.

May 3 2016

impr:specmicp allow retrieving solution in unsafe mode
f96bf7686096
·georget on May 3 2016, 22:25.
feat:specmicp:configuration add ReactBox configuration
a49b2019a703
·georget on May 3 2016, 22:24.
fix:specmicp Add move operator for ReactantBox
315d79756ea6
·georget on May 3 2016, 20:42.
minor:database add 'move' operations for DatabaseHolder
9283170dfee0
·georget on May 3 2016, 20:41.
impr:pimpl add move operations
2c0e057f4f6e
·georget on May 3 2016, 20:40.

May 2 2016

impr:specmicp enable user initialisation of SmartSolver
c953abeef04a
·georget on May 2 2016, 21:35.
grammar:specmicp Rename initialise_ to initialize_
8a7b57ade258
·georget on May 2 2016, 21:27.

Apr 28 2016

minor:build remove useless buggy code
776561ec331b
·georget on Apr 28 2016, 19:35.
minor:build add option for disabling fat lto objects
0feb256991aa
·georget on Apr 28 2016, 19:34.
minor:database remove deadcode generating warning
9a6a430bc2ff
·georget on Apr 28 2016, 19:31.
minor:commoin:io comments in units configuration functions
cc675a657a2e
·georget on Apr 28 2016, 19:28.

Apr 23 2016

impr:common:hdf5 Add read string dataset
c0101e219de9
·georget on Apr 23 2016, 20:53.

Apr 20 2016

minor:build Clean cmake modules
d5020bb175cf
·georget on Apr 20 2016, 23:49.

Apr 19 2016

minor:reactmicp:unsaturated cleanup transport stagger
0e6eede28aa4
·georget on Apr 19 2016, 22:31.
impr:dfpm:io print functions are in their own module
213a1c2ddeb9
·georget on Apr 19 2016, 21:18.
minorfix:dfpm correct typo in name
c091ca6ed676
·georget on Apr 19 2016, 20:23.
fix:reactmicp:unsaturated fix options getters in transport staggers
acc7f102c526
·georget on Apr 19 2016, 18:07.
fix:micpsolver fix condition number estimates test
8ed4d0d2bd57
·georget on Apr 19 2016, 15:59.
fix various bugs found with asan/ubsan
d5e810125277
·georget on Apr 19 2016, 03:15.
impr:build separate UBSAN/ASAN builds
aa42f2b98ab5
·georget on Apr 19 2016, 03:09.

Apr 13 2016

fix:common:log separate implementation/export part of log header
5248f11553a2
·georget on Apr 13 2016, 19:25.

Apr 11 2016

fix:tests:specmicp_common give directory for loading test
a24a33c389fd
·georget on Apr 11 2016, 21:15.
feat:docker fedora-23, debian-stretch dockerfiles
d932ef871dd3
·georget on Apr 11 2016, 20:59.
fix:test:specmicp_common get_env test fix
e8ccb0eec719
·georget on Apr 11 2016, 20:56.
upd:eigen fix for eigen3.3 compatibility
28db9f5617e8
·georget on Apr 11 2016, 20:39.

Apr 10 2016

fix:tests remove old hdf5 headers
59eff7e2c37b
·georget on Apr 10 2016, 21:59.
fix:examples:acc_carbo remove unecessary hdf5 headers
7e7115cf2633
·georget on Apr 10 2016, 21:47.
fix:headers remove inclusion of old HDF5 header
70876358221d
·georget on Apr 10 2016, 21:33.
minor:build mark LTO_<program> vars as advanced in cmake lto module
92b60da223b3
·georget on Apr 10 2016, 18:26.
impr:build Create FindEigen3Unsupported module for eigen3/Unsupported
e16dc3485596
·georget on Apr 10 2016, 18:25.

Apr 9 2016

fix:build fix hdf5 include directories
97dcff9fa40d
·georget on Apr 9 2016, 20:27.
del:dependancy remove dependance to HDF5 API
755485bbb4f1
·georget on Apr 9 2016, 17:51.
del:io:hdf5 remove old hdf5 wrapper around CPP HDF5 API
975cd3433232
·georget on Apr 9 2016, 17:48.

Apr 7 2016

fix:dfpm:parabolic_solver check if jacobian was successful
3cdc4047b2b0
·georget on Apr 7 2016, 19:47.
update:tests:reactmicp:acc_carbo
234b5432d69a
·georget on Apr 7 2016, 18:03.
fix:reactmicp:unsaturated:transport_stagger move dfpm solver initialization
8d7445331c34
·georget on Apr 7 2016, 17:56.
impr:reactmicp:solver print debug information if return code is good enough
6e88c9b19244
·georget on Apr 7 2016, 17:49.

Apr 6 2016

impr:test:reactmicp:binary:acc_carbo
74396fa02de7
·georget on Apr 6 2016, 22:46.
impr:reactmicp:unsaturated only compute residual 0 when initialisation is done
080906e9f926
·georget on Apr 6 2016, 22:45.
tests:unsaturated:acc_carbo change boundary conditions, use fixed flux for…
692a760b74f8
·georget on Apr 6 2016, 19:23.
impr:reactmicp:unsaturated compute equilibrium for each node at the beginning…
5f8a1f17204f
·georget on Apr 6 2016, 19:20.
Compute the total concentration vector
e37f8beae96e
·georget on Apr 6 2016, 19:20.

Apr 4 2016

impr:specmicp:extractor add total_solid_mass_concentration getter function
8da77adabb31
·georget on Apr 4 2016, 18:02.

Apr 1 2016

impr:io:hdf5:timesteps add operator[] to get a timestep by position
98ba3a9d616f
·georget on Apr 1 2016, 19:33.
fix:build install specmicp/reactmicp main headers
d72d8bcb98a4
·georget on Apr 1 2016, 19:00.

Mar 31 2016

docs:in_progress start more complete documentation of reactmicp
5441d357496a
·georget on Mar 31 2016, 02:35.
impr:specmicp:extractor compute total mass concentration
45661894a19a
·georget on Mar 31 2016, 02:35.
impr:reactmicp:unsaturated openmp directives -> change scheduling for solving…
abfc691f2c1d
·georget on Mar 31 2016, 02:35.
impr:reactmicp:unsaturated:io rewrited hdf5 saver/reader using new wrapper
3e0ab284bd47
·georget on Mar 31 2016, 02:35.
impr:database species can return the vector of labels, useful for IO
8f098384db8a
·georget on Mar 31 2016, 02:35.
upd:database:io:hdf5 update hdf5 output to new wrapper
55b54e9c16de
·georget on Mar 31 2016, 02:35.
upd:dfpm:io:hdf5 move hdf5 output to new wrapper
8618dbed70e1
·georget on Mar 31 2016, 02:35.
impr:io:hdf5 more wrapping around hdf5
4bb0e2c6c160
·georget on Mar 31 2016, 02:35.
fix:common:yaml_format higher precision for database output
ca73ab03cfed
·georget on Mar 31 2016, 01:59.

Mar 28 2016

upd:hdf5 Use the new hdf5 wrapper API in HDF5timesteps
7436518aa391
·georget on Mar 28 2016, 15:41.

Mar 25 2016

upd:specmicp:hdf5 save adim solution using new hdf5 wrapper
37417552df4c
·georget on Mar 25 2016, 18:59.
feat:io:hdf5 more wrapper
0bf1cbc67cee
·georget on Mar 25 2016, 18:58.

Mar 24 2016

feat:io:hdf5 add new HDF5 C API wrapper
b228fbc4dd5c
·georget on Mar 24 2016, 14:48.

Mar 21 2016

fix:build install main specmicp_common headers
681cd24cdd7c
·georget on Mar 21 2016, 20:34.
upd:reactmicp runner also output the resource usage information
1e56d0882286
·georget on Mar 21 2016, 20:30.
feat:specmicp_common basic resource usage information
5ad2f9b7bdde
·georget on Mar 21 2016, 20:29.

Mar 20 2016

doc:reactmicp:solver
18753ecb08de
·georget on Mar 20 2016, 16:36.
doc:specmicp_common
9c102ac65486
·georget on Mar 20 2016, 16:34.
fix:docs doxygen configuration, don't documente .cpp
fe4427ec1e6d
·georget on Mar 20 2016, 16:34.

Mar 19 2016

cosmetic:common:vector_checker put details in sub namespace and docs
c8a930e056dd
·georget on Mar 19 2016, 21:14.

Mar 18 2016

feat:specmicp Reactant box can now return a set of constraints
d94792a4f65f
·georget on Mar 18 2016, 22:42.
impr:specmicp:extractor add cache for unit conversions
20f010b038f7
·georget on Mar 18 2016, 19:30.
impr:tests:reactmicp:unsaturated condition check of MiCPSolver can be disabled
d1c80679be58
·georget on Mar 18 2016, 15:54.
upd:reactmicp:solver hide implementation details of runner
e21028dfd1f9
·georget on Mar 18 2016, 14:44.

Mar 17 2016

fix:reactmicp:solver timer, and timer output
8b85285ada0c
·georget on Mar 17 2016, 15:39.
fix:binary:unsaturated plugins name
1f3cc82ccbe0
·georget on Mar 17 2016, 14:02.
doc:specmicp_common
3f7631e04176
·georget on Mar 17 2016, 02:43.
impr:plugins clear plugins naming scheme
8c6f18b219e5
·georget on Mar 17 2016, 01:54.
upd:test:reactmicp:unsaturated update acc_carbo_* test
c3219d5b0b84
·georget on Mar 17 2016, 01:51.

Mar 16 2016

impr:reactmicp:unsaturated can now use millimoles unit
41fa07d8cfab
·georget on Mar 16 2016, 15:44.
test:specmicp:problem solver add tests for non SI units
5a2fb3e52f6c
·georget on Mar 16 2016, 15:28.
fix:micpsolver fix perf struct addition, return the last residual
1f66c20f5a45
·georget on Mar 16 2016, 15:27.
fix:specmicp millimoles unit now works !
4412fddf1e1c
·georget on Mar 16 2016, 15:26.
impr:units add liter in volume unit
c971cf4615b6
·georget on Mar 16 2016, 15:21.
fix:build same options to build reactimcp_unsaturated with static libs`
52a48c08d9b4
·georget on Mar 16 2016, 15:13.

Mar 14 2016

fix:specmicp:probelm_solver units, units, units
8097bf3fab7d
·georget on Mar 14 2016, 15:17.

Mar 13 2016

feat:specmicp ReactantBox : initial formulation with units
9149aa40938d
·georget on Mar 13 2016, 21:44.
impr:specmicp_common:laws add function to obtain density of water with correct…
ab4484108d65
·georget on Mar 13 2016, 21:43.

Mar 11 2016

fix:test:specmicp_common add missing Approx()
b5ef1eadcb8b
·georget on Mar 11 2016, 04:51.
upd:units use new units system
446e84e51406
·georget on Mar 11 2016, 04:51.
upd:database add a global variable giving the units used internally
470a55f4feaf
·georget on Mar 11 2016, 04:51.
impr:units add SI and CMG units as global variables
4b53dfe6a743
·georget on Mar 11 2016, 04:51.
upd:specmicp adim system used new moles unit
1ecc67c5bb68
·georget on Mar 11 2016, 00:50.
upd:database use new mol unit, deprecate old unit conversion functions
d8b704dea3af
·georget on Mar 11 2016, 00:48.

Mar 10 2016

feat:units add quantity of matters unit in specmicp_common
d4e389fc2ce0
·georget on Mar 10 2016, 20:12.

Mar 7 2016

fix:tests:acc_carb it works ! (did it ?)
f6d6aa5161c0
·georget on Mar 7 2016, 21:49.
cosmetic:unsaturated
712a7e059d81
·georget on Mar 7 2016, 21:46.
impr:reactmicp move all timestep initialization to transport stagger
81ec8df88413
·georget on Mar 7 2016, 21:43.
impr:unsaturated:chemistry return option vector
06a7c676281b
·georget on Mar 7 2016, 21:38.
impr:reactmicp share chemistry and transport stagger with upscaling stagger
3d97f5b10cac
·georget on Mar 7 2016, 21:32.

Mar 6 2016

impr:scripts:analyser Clean, improve unsaturated analyser module
d427dd2f97b9
·georget on Mar 6 2016, 18:14.

Mar 2 2016

fix:unsaturated:analyser fix python syntax error
c535dabb42f8
·georget on Mar 2 2016, 17:53.
cosmetic:micpsolver debug messages
a87642f4f330
·georget on Mar 2 2016, 17:43.

Historymastera23dacbe7335c3e28b04514…

May 4 2016

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History
mastera23dacbe7335c3e28b04514…