Diffusion SpecMiCP / ReactMiCP (master) History

specmicp/CMakeLists.txt
master82b1f62aeb2abb0875af37d…

Oct 1 2015

toolchain: add support for micro-benchmarking
82b1f62aeb2a
·fabien on Oct 1 2015, 04:50.

Jun 25 2015

Install SpecMiCP library
829fead4677c
·fabien on Jun 25 2015, 23:21.
feature: Add specmicp binary
716c76a4f13f
·fabien on Jun 25 2015, 19:24.

Jun 10 2015

Add library directories for yaml
a4c639058982
·georget on Jun 10 2015, 19:55.

Jun 9 2015

Remove jsoncpp from the tree
e398b85a0be5
·fabien on Jun 9 2015, 05:54.

May 24 2015

Add helper functions for YAML configurations
add6a4326b0b
·fabien on May 24 2015, 20:40.

May 18 2015

Cmake files again
debf6abf5a42
·fabien on May 18 2015, 17:10.
Add lto flags
a4fe4c3a589a
·fabien on May 18 2015, 00:39.

May 16 2015

Move flags check/search to their own file
773ff3d202e2
·fabien on May 16 2015, 21:02.

May 15 2015

Create a script directory and moves the scripts to it
bfe4cd969d3a
·fabien on May 15 2015, 03:37.

May 3 2015

Add the specmicp_common library
ff0d0fbcfe7b
·fabien on May 3 2015, 22:19.

Apr 30 2015

Remove the cython build from the main project
cbfd35fa9dd3
·fabien on Apr 30 2015, 15:00.

Apr 28 2015

CmakeLists fixes/enhancements
3d80bf60e333
·fabien on Apr 28 2015, 16:19.

Apr 27 2015

Add a reactmicp example script for qsub
0e9c9eca9e55
·georget on Apr 27 2015, 15:42.
Add an option to disable the cython module
52245b843fdc
·georget on Apr 27 2015, 15:01.
Add a script to automatize the PGO sequence
d6e70603f1c4
·fabien on Apr 27 2015, 02:10.

Apr 26 2015

Improve SanitizerBuild
9dfcde9f2f65
·fabien on Apr 26 2015, 20:26.

Apr 23 2015

Add a new BUILD_TYPE : Sanitizer
92e6db36ac4c
·fabien on Apr 23 2015, 05:32.
Register the tests in CMake
0695a5eebbb7
·fabien on Apr 23 2015, 04:05.
Correct FindSpecMiCP.cmake
094ec7a3c031
·fabien on Apr 23 2015, 00:24.

Apr 22 2015

Minor fixes in Cmake files
40a28cb7668f
·fabien on Apr 22 2015, 01:49.

Apr 21 2015

add a FindSpecMiCP cmake module
e8e561d09e79
·fabien on Apr 21 2015, 20:26.
More work on the cmake files
e8dc0eca640b
·fabien on Apr 21 2015, 17:57.
Proper installation of cython/databases/doc
d05c342d7b8f
·fabien on Apr 21 2015, 17:23.
finally, SpecMiCP/ReactMiCP can be installed
367d9d550e9d
·fabien on Apr 21 2015, 05:24.

Apr 19 2015

Appendix to the database
e16082e00ff6
·fabien on Apr 19 2015, 21:52.

Apr 16 2015

Documentation
d242af75fe48
·fabien on Apr 16 2015, 05:32.

Apr 10 2015

Minor fixed in the main CMakeLists
72b4f0f12aa9
·fabien on Apr 10 2015, 04:23.

Apr 2 2015

Add end user include
56a3baf15614
·fabien on Apr 2 2015, 03:56.

Apr 1 2015

Add AqueousSelector and OxydoSelector
cb51196a93d4
·fabien on Apr 1 2015, 23:02.
Add cemdata.js
522d1d188e48
·fabien on Apr 1 2015, 23:00.
Improve the main CMakeLists.txt
690a91cea2b7
·fabien on Apr 1 2015, 22:59.

Mar 26 2015

Use the findOpenMP package in the CmakeList file
953d28abf77f
·fabien on Mar 26 2015, 20:41.

Mar 25 2015

comment redefinition of the release flags
0d36c29be443
·fabien on Mar 25 2015, 14:53.

Mar 24 2015

Remove all the old code in the reactmicp folder
dfd04be5d63c
·fabien on Mar 24 2015, 19:06.
Remove the ReducedSystem
7f9de8ece968
·fabien on Mar 24 2015, 19:04.
Improves the database
c2a8ab6f9a8e
·fabien on Mar 24 2015, 18:38.

Mar 17 2015

Add a runner class for the reactive transport solver
a1bb082f067b
·fabien on Mar 17 2015, 15:45.
Add and improve functions in the io library
941766fc8a67
·fabien on Mar 17 2015, 15:33.

Feb 27 2015

update Cmakelist, better treatments of compilation flags
a7efb1b1706d
·fabien on Feb 27 2015, 18:16.
Add a simple io library to output data
bf7a37fc71e9
·fabien on Feb 27 2015, 17:36.
Add a simple timer class
10ab4cafbaa0
·fabien on Feb 27 2015, 17:32.

Feb 26 2015

Add a generic 1D mesh, issue #13
339c6d31875f
·fabien on Feb 26 2015, 04:09.

Feb 25 2015

add an adaptative timestepper algorithm
e403516d3274
·fabien on Feb 25 2015, 22:05.

Feb 17 2015

add the pcfm methods in the CMakeList.txt file
7ce05df64442
·fabien on Feb 17 2015, 04:51.

Feb 16 2015

externalize the dof numberign of the AdimensionalSystem, so it can be used by…
31d88c30dde8
·fabien on Feb 16 2015, 15:46.

Feb 11 2015

Add the database for the MoMas benchmark, maybe use for other test too
965036a9c569
·fabien on Feb 11 2015, 14:56.

Feb 10 2015

add kinetics solver for the AdimensionalSystem (issue #15), TO TEST
a388607362fe
·fabien on Feb 10 2015, 02:18.

Feb 6 2015

remove unused struct from saturated_react
a0d7a916d1a1
·fabien on Feb 6 2015, 20:45.

Feb 5 2015

add a generic Axisymmetric 1D mesh class, in process of resolving issue #13
113faa16267a
·fabien on Feb 5 2015, 21:11.

Jan 17 2015

modify the sparse solver module to resolve issue #11
a247fbc100c4
·fabien on Jan 17 2015, 22:34.

Jan 16 2015

Improve/clean cmakelist, list requirements/options in INSTALL
4bf2553e54f6
·fabien on Jan 16 2015, 16:34.

Jan 12 2015

Start the work on the new SaturatedDiffusion systems for the new reactive…
3c484d96fa9b
·fabien on Jan 12 2015, 17:05.

Jan 9 2015

Improve reactive transport solver
6f21451dd340
·fabien on Jan 9 2015, 22:05.
add foundations of the flexible reactive transport solver
a19ce13e1a11
·fabien on Jan 9 2015, 17:45.

Dec 12 2014

add coupler, extractor for equilibrium
4adc6181a531
·fabien on Dec 12 2014, 19:42.

Dec 9 2014

add src/dfpm/types.hpp in sources
8caac4f45779
·fabien on Dec 9 2014, 05:00.

Dec 7 2014

add the dfpm module, generic finite volume module, move meshes to dfpm
511a07d7f37c
·fabien on Dec 7 2014, 20:50.

Dec 5 2014

Add EquilibriumCurve, base class to create ReactionPath model
d442c9ff39a3
·fabien on Dec 5 2014, 22:16.

Dec 2 2014

add AdimensionalSystemOptions, like ReducedSystemOptions
0b629aa5b824
·fabien on Dec 2 2014, 19:47.

Dec 1 2014

add options for reduced system
96b7b4f73361
·fabien on Dec 1 2014, 17:38.
add a class to compute exponential moving average
bc007865d143
·fabien on Dec 1 2014, 17:33.

Nov 22 2014

Add AdimensionnalSystemSolutionExtractor
1449c5f7ed20
·fabien on Nov 22 2014, 19:24.

Nov 20 2014

add solver for Adimensional system and Dissolver, to set up problem
d1998e3678d3
·fabien on Nov 20 2014, 02:41.

Nov 19 2014

rename adim into adimensional system
e2078e2d32ae
·fabien on Nov 19 2014, 16:42.

Nov 18 2014

implementation of adimensional system and test
477470dc6bc8
·fabien on Nov 18 2014, 23:54.

Nov 13 2014

add support for gmres in sparse_solver module
f67b525bf55f
·fabien on Nov 13 2014, 00:55.
correct boost include dir varaibles in CMakelist.txt
8d8999e139be
·fabien on Nov 13 2014, 00:47.
Add PerformanceHandler on the model of OptionsHandler
a4f20df9b49f
·fabien on Nov 13 2014, 00:46.
rename file containing the reactive transport solver options
25b4a7a686ca
·fabien on Nov 13 2014, 00:45.

Nov 11 2014

Update Cmakelist, easier to compile in ohter system (i.e. denali)
2763d88b9342
·fabien on Nov 11 2014, 21:58.

Nov 7 2014

add base class to handle options
d6ddcf0a9bd2
·fabien on Nov 7 2014, 18:58.

Oct 28 2014

start implementing kinetics solver
2f65d5a63c08
·fabien on Oct 28 2014, 20:44.

Oct 26 2014

move and try improving sparse solver tools
b86528d727b5
·fabien on Oct 26 2014, 00:03.

Oct 25 2014

add reactive transport neutrality solver, and update transport program and the…
6d08d8744732
·fabien on Oct 25 2014, 22:31.

Oct 20 2014

add electroneutrality transport program
ab2944bc8002
·fabien on Oct 20 2014, 23:03.

Oct 9 2014

reduce header dependancy
9ac10ec69a99
·fabien on Oct 9 2014, 04:39.

Oct 8 2014

add example directory
da3d68efcce0
·fabien on Oct 8 2014, 22:06.
add axissymmetric mesh 1d, one file per mesh, add reactmicp/mesh.hpp
a3fe40ba7210
·fabien on Oct 8 2014, 20:19.

Oct 6 2014

add common.hpp, modify database module to use it
eb7779e20fdf
·fabien on Oct 6 2014, 15:30.

Oct 3 2014

add cmakefile in directory test
191d56f41074
·fabien on Oct 3 2014, 16:28.
remove unecessary files
e5484eae1665
·fabien on Oct 3 2014, 00:36.

Sep 28 2014

start working on BCs and ther applications
49aeec52193c
·fabien on Sep 28 2014, 23:38.
update and coupling utils in SIASaturatedVariables
a68894083238
·fabien on Sep 28 2014, 20:16.

Sep 26 2014

dfpmsolver, and saturated_diffusion program can be solved
8342bd67907c
·fabien on Sep 26 2014, 02:27.

Sep 25 2014

start working on SIA solver
b5fde6377526
·fabien on Sep 25 2014, 05:00.

Sep 11 2014

MiCPParabolicSolver runs, does not solve anything
8659642b7a98
·fabien on Sep 11 2014, 22:49.

Sep 10 2014

correction of bugs due to merging, also use new database range_* function in…
141e6db490b4
·fabien on Sep 10 2014, 03:54.
add the main diffusion system
d01a0c53637d
·fabien on Sep 10 2014, 02:12.
introducing DiffusionSecondary for activity coefficient and concentration of…
f1b23f04d9ad
·fabien on Sep 10 2014, 02:12.
move and improve equation numbering for diffusion reactive transport system
e0f20360e06e
·fabien on Sep 10 2014, 02:12.
bug correction for diffusion system
54f4e1c465c9
·fabien on Sep 10 2014, 02:12.
first commit on branch reactivetransport
b1dec92efd3e
·fabien on Sep 10 2014, 02:12.

Sep 7 2014

first commit to cython branch, start interface for database
cc762abbb0d9
·fabien on Sep 7 2014, 05:20.

Sep 5 2014

reintroduce the old solver, for a ~working min solver
54f50e62ff4b
·fabien on Sep 5 2014, 19:25.

Aug 19 2014

general documentation
f58dc561296c
·fabien on Aug 19 2014, 15:37.

Aug 18 2014

cleaning not working gasphase in reduce_system
2555d4790cc7
·fabien on Aug 18 2014, 16:23.
after a long absence, start cleaning
768489c0ad3e
·fabien on Aug 18 2014, 16:07.

Jun 17 2014

start implementing the fixed volume problem
9320d65b0bd7
·georget on Jun 17 2014, 22:31.
separate common laws, constant and unit conversion in their own files
191e81a7b47a
·georget on Jun 17 2014, 22:29.