Diffusion SpecMiCP / ReactMiCP (master) History

specmicp/src
master12ee7fce271bfd46af5ed50…

Aug 15 2018

reactmicp:chloride improve boundary conditions and add configuration
12ee7fce271b
·georget on Aug 15 2018, 16:16.
reactmicp:systems move AdimConstraints into common
773188cd2fbe
·georget on Aug 15 2018, 16:16.
reactmicp:common move configuration for equilibriumOptionsVector to common
5051d957d18f
·georget on Aug 15 2018, 09:23.

Aug 14 2018

reactmicp:chloride add HDF5 reader/saver
68302da2615f
·georget on Aug 14 2018, 18:57.
reactmicp:chloride misc improvement
ccc131052ac4
·georget on Aug 14 2018, 18:57.
reactmicp:unsaturated update to new common reactmicp system
4a73e9b95387
·georget on Aug 14 2018, 18:57.
reactmicp:systems add common to gather boilerplates between systems
c56a7c260189
·georget on Aug 14 2018, 18:57.
hdf5:timesteps add member to retrieve timesteps as strings
c462fd6916c2
·georget on Aug 14 2018, 18:57.
common:hdf5 add partial read of datasets
4af1bea1b14d
·georget on Aug 14 2018, 18:57.

Aug 7 2018

reactmicp:chloride constraints is provided by BCs
0363df1a334f
·georget on Aug 7 2018, 14:29.
reactmicp:chloride add init_variables
44a3ef5ab597
·georget on Aug 7 2018, 14:25.
reactmicp:chloride transport stagger now use chem stagger
3e713c77b395
·georget on Aug 7 2018, 08:56.

Jul 3 2018

reactmicp:chloride use openmp in transport stagger
1acce8e96b7d
·georget on Jul 3 2018, 14:58.

Jun 29 2018

reactmicp:minor public classes in libraries
fc5f9eb0803a
·georget on Jun 29 2018, 14:20.

Jun 25 2018

Merge branch 'chloride' of bitbucket.org:specmicp/specmicp into chloride
38c6305ed272
·georget on Jun 25 2018, 18:18.
reactmicp:chloride bit of cleaning in transport program
cc0bc69f6348
·georget on Jun 25 2018, 18:11.
major:specmicp add sorption EDL model
25b655cbf3cf
·georget on Jun 25 2018, 18:11.
major:database new sorbed species system
824b243e25d0
·georget on Jun 25 2018, 18:11.

Apr 10 2018

database:breaking refactor interface: only one surface site per sorbed species
a908a67d3e8c
·georget on Apr 10 2018, 09:23.

Apr 3 2018

specmicp: update specmicp system to new database format
1a9ce37fc033
·georget on Apr 3 2018, 13:12.
database:breaking Add multiple surface sites
d86d6fd4da06
·georget on Apr 3 2018, 13:04.

Mar 3 2018

build:minor add option to disable reactmicp system
39bff88c9e9a
·georget on Mar 3 2018, 10:37.

Mar 2 2018

common:fix density computation
349940604565
·georget on Mar 2 2018, 16:31.

Feb 21 2018

specmicp: add charge balance computation in extractor
141c345d74de
·georget on Feb 21 2018, 14:37.
chloride: fixes for chemistry solver in transport program
1ca349fa1a0e
·georget on Feb 21 2018, 14:36.

Feb 14 2018

chloride: perturb adim, current and potential init
628531a71b14
·georget on Feb 14 2018, 12:00.

Feb 13 2018

chloride: good equilibrium obtained for Na/Cl system
03817253affd
·georget on Feb 13 2018, 13:15.
mesh:minor check input for range mesh
af1c6caafe71
·georget on Feb 13 2018, 13:04.
dfpm:minor style corrections
aee5da67f2eb
·georget on Feb 13 2018, 13:03.

Jan 29 2018

tmp: lot small changes for system transfer
35557e3cfb69
·georget on Jan 29 2018, 20:36.

Dec 22 2017

chloride: more work on the chloride system
848705901e68
·georget on Dec 22 2017, 16:56.
common:add helpers function for eigen
3df7e4247bb7
·georget on Dec 22 2017, 16:51.
fix:Smart solver now use units from reactant box
c06fce498b9a
·georget on Dec 22 2017, 16:49.

Dec 11 2017

chloride:fix with tests
c900f5ba2d13
·georget on Dec 11 2017, 11:54.
reactmicp:add helper function to transform dfpm return code
8a7c3529bcc0
·georget on Dec 11 2017, 11:52.

Dec 8 2017

continuing chloride system implementation
00f02a85ce08
·georget on Dec 8 2017, 17:24.

Nov 27 2017

reactmicp: add member to ChemistryStaggerBase
5d637ad6be6d
·georget on Nov 27 2017, 11:47.
common:add a generic return code for solver-agnostic algorithms
2e2b628aa887
·georget on Nov 27 2017, 11:47.

Nov 20 2017

chloride: first commit for new chloride system
3a45c7fe073a
·georget on Nov 20 2017, 13:14.

Nov 1 2017

build:minor remove gcc7 warning with eigen includes
cb0ab9a56b35
·georget on Nov 1 2017, 15:52.

Oct 31 2017

build:fix PGO optimization
50d9a67908d3
·georget on Oct 31 2017, 13:18.
fix: install specimcp_common/config.h header
dee7f564bf24
·georget on Oct 31 2017, 13:16.

Oct 30 2017

build:fix be sure to pass EIGEN3_UNSUPPORTED_FOUND definition
45799c295e84
·georget on Oct 30 2017, 09:30.
dfpm:fix:minor correct typo
4fcb60e988fc
·georget on Oct 30 2017, 09:29.

Oct 29 2017

build:feature add option to use lapacke in Eigen
3bbaea7497b8
·georget on Oct 29 2017, 18:30.

Oct 27 2017

Some more comments
921a58bdaf61
·georget on Oct 27 2017, 18:06.

Sep 13 2017

fix:eigen fix sparse_lu module
d2545c482392
·georget on Sep 13 2017, 16:24.
build:fix now it's the turn of bin/tests and benchmarks
d796dbb0343c
·georget on Sep 13 2017, 12:23.
build:fix fix dfpm dependancy to yaml-cpp
2af1350d30dd
·georget on Sep 13 2017, 11:44.
build:fix one more for the road baby
9e31d0b9115e
·georget on Sep 13 2017, 11:40.
build:fix add PkgConfig::YAML target for old cmake
b792a2956ec6
·georget on Sep 13 2017, 11:21.
build:fix database uses plain yaml interface
25c945ad9a59
·georget on Sep 13 2017, 11:05.

Sep 12 2017

build:fix use imported hdf5 path, #blamedebian
6357db487983
·georget on Sep 12 2017, 16:51.
build:fix fix hdf5 include dirs
fd1f6982eaf8
·georget on Sep 12 2017, 16:34.
build:fix well...
e7d68c9347c5
·georget on Sep 12 2017, 16:28.
build:fix add yaml include dirs #blame-debian
b928052f5fbc
·georget on Sep 12 2017, 16:20.
build: fix the fix, std(11)(14) compilation
569af6df0266
·georget on Sep 12 2017, 15:58.
build: Add SpecMiCPConfig.cmake : package file
990fa8a6d5ec
·georget on Sep 12 2017, 13:20.

Sep 11 2017

build: refactor cmake file for cmake config file
9f0bfa6957ca
·georget on Sep 11 2017, 15:59.

Aug 22 2017

doc: More documentation !
4728ae8e7325
·georget on Aug 22 2017, 22:03.

Aug 4 2017

fix propagates typo correction
ca7b5e361a03
·georget on Aug 4 2017, 19:12.
Documentation run
f7c95635bdac
·georget on Aug 4 2017, 18:52.

May 16 2017

fix: compilation with clang++
b4fb4366dd98
·georget on May 16 2017, 22:57.
minor: complete specmicp bin to match unsaturated
0a6168e296d9
·georget on May 16 2017, 19:57.

Apr 28 2017

minor: format fix
338641c069f9
·georget on Apr 28 2017, 20:34.
common: fix cli parser backend
e6c26c6b2885
·georget on Apr 28 2017, 20:15.

Apr 21 2017

specmicp:bin update to match reactmicp-unsaturated
c0da2ae5f913
·georget on Apr 21 2017, 20:18.
database: add ENV reader for db
65d091e2f810
·georget on Apr 21 2017, 20:16.

Apr 20 2017

common:log correct segfault of if no all_io_files
0fc353dd99de
·georget on Apr 20 2017, 17:47.

Apr 18 2017

common: Add io files tracker
6ab3d4f897e0
·georget on Apr 18 2017, 23:01.
reactmicp:runner return _iter filepath
7689995362b8
·georget on Apr 18 2017, 22:49.
minor:reactmicp:unsaturated add useful comment on variables creation
370081051f4e
·georget on Apr 18 2017, 22:44.
Correct data and time parsing for DST
2919173a8b48
·georget on Apr 18 2017, 22:06.

Mar 13 2017

fix:unsaturated read inert_volume_fractio from hdf5 file
8044abc08d5b
·georget on Mar 13 2017, 18:40.

Mar 7 2017

common:io add a file to register all files
ff4beacfbb0d
·georget on Mar 7 2017, 19:45.
common: add read date/item string
c5793433c3d6
·georget on Mar 7 2017, 19:43.

Feb 27 2017

common: add to filesystem api
0f32942e254a
·georget on Feb 27 2017, 17:39.
log: add function to log error and throw runtime_error
d9ee766dbb95
·georget on Feb 27 2017, 17:31.

Feb 21 2017

common: complete HDF5Timesteps API
8e3336821374
·georget on Feb 21 2017, 20:52.
conf:database allow to turn off check_compo in database
91d356fc6d3f
·georget on Feb 21 2017, 20:43.
bin:reactmicp fix gas equation configuration
c0c8d2fa8f10
·georget on Feb 21 2017, 20:33.
bin:reactmicp Use current directory to check for database
aa1e0f666fc1
·georget on Feb 21 2017, 20:20.

Feb 14 2017

fix: update specmicp bin to print path to db is solution
dea414652a6e
·georget on Feb 14 2017, 22:01.

Feb 13 2017

specmicp: fix parsing database
994e96f2d151
·georget on Feb 13 2017, 23:57.
fix:database do not use metadata in database hash
8879040f78fc
·georget on Feb 13 2017, 23:46.
specmicp:io fix read/save solution to yaml file
60df8d7802f5
·georget on Feb 13 2017, 20:49.

Feb 3 2017

specmicp: move AdimSolutionSolver to specmicp::io
c0bc1498b349
·georget on Feb 3 2017, 17:00.

Jan 27 2017

minor: init some values in yaml reader
46885de5dc06
·georget on Jan 27 2017, 22:01.
fix parsing water equation in yaml file
7a9fcae060d9
·georget on Jan 27 2017, 21:57.
minor:specmicp print water equation
81053b2a4950
·georget on Jan 27 2017, 21:51.
fix build to use config yaml lib
9e522bc9887f
·georget on Jan 27 2017, 21:48.
specmicp: fix uninitialized variables
a30360d1e053
·georget on Jan 27 2017, 21:33.

Jan 4 2017

specmicp fix add_<> function in reactant_box
91703167680d
·georget on Jan 4 2017, 13:35.

Jan 3 2017

Fix for build with gcc 4.9.2 (debian 8)
a8288920e6fe
·georget on Jan 3 2017, 14:34.

Nov 23 2016

fix:specmicp correct porosity computation in residual
c3cae15edbf6
·georget on Nov 23 2016, 16:21.
minor:specmicp initialization random generator
42d1352287f2
·georget on Nov 23 2016, 16:18.
fix:specmicp : correct C->K conversion
4e045d7518d2
·georget on Nov 23 2016, 16:16.

Oct 4 2016

minor: add configuration log for no_precipitation
06af08aa99ce
·georget on Oct 4 2016, 19:22.

Sep 30 2016

minor:specmicp add function for cython glue
ee286ee159df
·georget on Sep 30 2016, 21:44.

Sep 21 2016

reactmicp: Add constraint to remove the precipitation of a mineral
37c71514d885
·georget on Sep 21 2016, 19:16.

specmicp/srcmaster12ee7fce271bfd46af5ed50…

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specmicp/src
master12ee7fce271bfd46af5ed50…