Diffusion SpecMiCP / ReactMiCP (master) History

specmicp/src
master856cb1763aad225c583ccda…

Nov 2 2018

system: only number equations when need to solve systems
856cb1763aad
·georget on Nov 2 2018, 17:01.
specmicp:system clean equation numbering
aec0204dafd0
·georget on Nov 2 2018, 14:59.
specmicp: first implementation of solid solutions
023c8e64faa4
·georget on Nov 2 2018, 14:59.
micpsolver:minor modifications in linesearch to get non-finite lambda
51054d8b7503
·georget on Nov 2 2018, 14:59.
micpsolver:fix minor typo in micpsolver
43ac06387e30
·georget on Nov 2 2018, 14:59.
database: add solid solutions in database
605d0d37b109
·georget on Nov 2 2018, 14:59.

Oct 19 2018

specmicp:minor adds some asserts in AdimSolver
943fd2fe5ed6
·georget on Oct 19 2018, 09:04.
chloride:eqstagger turn off solver non ideality while perturbating solution
d7edfae72c6f
·georget on Oct 19 2018, 09:03.

Oct 5 2018

mesh: add custom nodes coordinates mesh (+conf)
3fb34b127383
·georget on Oct 5 2018, 18:04.

Sep 28 2018

reactmicp:chloride small improvements - running simmulation
4527ae1e21e8
·georget on Sep 28 2018, 12:14.
reactant_box: add access to surface model
fff28f19ecc4
·georget on Sep 28 2018, 12:12.

Sep 26 2018

specmicp: add fixed saturation constraints
fd6b77ea4c99
·georget on Sep 26 2018, 10:50.

Sep 23 2018

bugfix: pow10 was a glibc nonposix extension
2fd28b1ba0e4
·georget on Sep 23 2018, 21:09.
specmicp:extractor: add effective saturation index functions
8a188c3d283a
·georget on Sep 23 2018, 21:08.

Sep 13 2018

reactmicp: chloride Perturbation of adim solution only solves aqueous species
4b72db0089fc
·georget on Sep 13 2018, 18:44.
specmicp:solver add function to merge mobile and immobile solutions
dc37e8beeb9b
·georget on Sep 13 2018, 18:39.

Sep 12 2018

specmicp: add option to disable immobile species in solver
db939b5e3fbf
·georget on Sep 12 2018, 17:16.

Sep 11 2018

reactmicp:chloride improve ChlorideHDF5Reader
4ecda11ec9cb
·georget on Sep 11 2018, 13:30.
minor:common:config correct missing template for list_to_vector
e97e0bf083a1
·georget on Sep 11 2018, 13:28.

Sep 10 2018

reactmicp:binary add chloride binary (and an example)
214797a684c2
·georget on Sep 10 2018, 18:00.
reactmicp:chloride small fixes all around
7401b2cbe674
·georget on Sep 10 2018, 17:59.
fix:reactmicp initialize timers correctly
4f4f8a3c1bd2
·georget on Sep 10 2018, 17:53.
bin:reactmicp factorize some function in reactmicp app_core
3a40cecce487
·georget on Sep 10 2018, 17:50.
common:safe_config fix map iterator, to iterate over different types
3930bc94eb79
·georget on Sep 10 2018, 17:47.

Sep 2 2018

dfpm:test make sure last noe of axisymmetric mesh is at 0
d67c91abddd2
·georget on Sep 2 2018, 18:01.

Aug 24 2018

reactmicp:chloride start working towards exec for chloride system
29ed1db4fb30
·georget on Aug 24 2018, 12:44.
reactmicp:runner move some function of SimulationInfo to cpp file
0b52e3b5e97f
·georget on Aug 24 2018, 12:17.
reactmicp:bin reorganize unsaturated binary to allow reuse for chloride binary
375cb4f0deed
·georget on Aug 24 2018, 12:14.
common:openmp improve eigen parallel support
df14d38fdd98
·georget on Aug 24 2018, 12:06.
database:print add member to print general info in conf log
e9b4e9a93f97
·georget on Aug 24 2018, 12:05.

Aug 15 2018

reactmicp:chloride improve boundary conditions and add configuration
12ee7fce271b
·georget on Aug 15 2018, 16:16.
reactmicp:systems move AdimConstraints into common
773188cd2fbe
·georget on Aug 15 2018, 16:16.
reactmicp:common move configuration for equilibriumOptionsVector to common
5051d957d18f
·georget on Aug 15 2018, 09:23.

Aug 14 2018

reactmicp:chloride add HDF5 reader/saver
68302da2615f
·georget on Aug 14 2018, 18:57.
reactmicp:chloride misc improvement
ccc131052ac4
·georget on Aug 14 2018, 18:57.
reactmicp:unsaturated update to new common reactmicp system
4a73e9b95387
·georget on Aug 14 2018, 18:57.
reactmicp:systems add common to gather boilerplates between systems
c56a7c260189
·georget on Aug 14 2018, 18:57.
hdf5:timesteps add member to retrieve timesteps as strings
c462fd6916c2
·georget on Aug 14 2018, 18:57.
common:hdf5 add partial read of datasets
4af1bea1b14d
·georget on Aug 14 2018, 18:57.

Aug 7 2018

reactmicp:chloride constraints is provided by BCs
0363df1a334f
·georget on Aug 7 2018, 14:29.
reactmicp:chloride add init_variables
44a3ef5ab597
·georget on Aug 7 2018, 14:25.
reactmicp:chloride transport stagger now use chem stagger
3e713c77b395
·georget on Aug 7 2018, 08:56.

Jul 3 2018

reactmicp:chloride use openmp in transport stagger
1acce8e96b7d
·georget on Jul 3 2018, 14:58.

Jun 29 2018

reactmicp:minor public classes in libraries
fc5f9eb0803a
·georget on Jun 29 2018, 14:20.

Jun 25 2018

Merge branch 'chloride' of bitbucket.org:specmicp/specmicp into chloride
38c6305ed272
·georget on Jun 25 2018, 18:18.
reactmicp:chloride bit of cleaning in transport program
cc0bc69f6348
·georget on Jun 25 2018, 18:11.
major:specmicp add sorption EDL model
25b655cbf3cf
·georget on Jun 25 2018, 18:11.
major:database new sorbed species system
824b243e25d0
·georget on Jun 25 2018, 18:11.

Apr 10 2018

database:breaking refactor interface: only one surface site per sorbed species
a908a67d3e8c
·georget on Apr 10 2018, 09:23.

Apr 3 2018

specmicp: update specmicp system to new database format
1a9ce37fc033
·georget on Apr 3 2018, 13:12.
database:breaking Add multiple surface sites
d86d6fd4da06
·georget on Apr 3 2018, 13:04.

Mar 3 2018

build:minor add option to disable reactmicp system
39bff88c9e9a
·georget on Mar 3 2018, 10:37.

Mar 2 2018

common:fix density computation
349940604565
·georget on Mar 2 2018, 16:31.

Feb 21 2018

specmicp: add charge balance computation in extractor
141c345d74de
·georget on Feb 21 2018, 14:37.
chloride: fixes for chemistry solver in transport program
1ca349fa1a0e
·georget on Feb 21 2018, 14:36.

Feb 14 2018

chloride: perturb adim, current and potential init
628531a71b14
·georget on Feb 14 2018, 12:00.

Feb 13 2018

chloride: good equilibrium obtained for Na/Cl system
03817253affd
·georget on Feb 13 2018, 13:15.
mesh:minor check input for range mesh
af1c6caafe71
·georget on Feb 13 2018, 13:04.
dfpm:minor style corrections
aee5da67f2eb
·georget on Feb 13 2018, 13:03.

Jan 29 2018

tmp: lot small changes for system transfer
35557e3cfb69
·georget on Jan 29 2018, 20:36.

Dec 22 2017

chloride: more work on the chloride system
848705901e68
·georget on Dec 22 2017, 16:56.
common:add helpers function for eigen
3df7e4247bb7
·georget on Dec 22 2017, 16:51.
fix:Smart solver now use units from reactant box
c06fce498b9a
·georget on Dec 22 2017, 16:49.

Dec 11 2017

chloride:fix with tests
c900f5ba2d13
·georget on Dec 11 2017, 11:54.
reactmicp:add helper function to transform dfpm return code
8a7c3529bcc0
·georget on Dec 11 2017, 11:52.

Dec 8 2017

continuing chloride system implementation
00f02a85ce08
·georget on Dec 8 2017, 17:24.

Nov 27 2017

reactmicp: add member to ChemistryStaggerBase
5d637ad6be6d
·georget on Nov 27 2017, 11:47.
common:add a generic return code for solver-agnostic algorithms
2e2b628aa887
·georget on Nov 27 2017, 11:47.

Nov 20 2017

chloride: first commit for new chloride system
3a45c7fe073a
·georget on Nov 20 2017, 13:14.

Nov 1 2017

build:minor remove gcc7 warning with eigen includes
cb0ab9a56b35
·georget on Nov 1 2017, 15:52.

Oct 31 2017

build:fix PGO optimization
50d9a67908d3
·georget on Oct 31 2017, 13:18.
fix: install specimcp_common/config.h header
dee7f564bf24
·georget on Oct 31 2017, 13:16.

Oct 30 2017

build:fix be sure to pass EIGEN3_UNSUPPORTED_FOUND definition
45799c295e84
·georget on Oct 30 2017, 09:30.
dfpm:fix:minor correct typo
4fcb60e988fc
·georget on Oct 30 2017, 09:29.

Oct 29 2017

build:feature add option to use lapacke in Eigen
3bbaea7497b8
·georget on Oct 29 2017, 18:30.

Oct 27 2017

Some more comments
921a58bdaf61
·georget on Oct 27 2017, 18:06.

Sep 13 2017

fix:eigen fix sparse_lu module
d2545c482392
·georget on Sep 13 2017, 16:24.
build:fix now it's the turn of bin/tests and benchmarks
d796dbb0343c
·georget on Sep 13 2017, 12:23.
build:fix fix dfpm dependancy to yaml-cpp
2af1350d30dd
·georget on Sep 13 2017, 11:44.
build:fix one more for the road baby
9e31d0b9115e
·georget on Sep 13 2017, 11:40.
build:fix add PkgConfig::YAML target for old cmake
b792a2956ec6
·georget on Sep 13 2017, 11:21.
build:fix database uses plain yaml interface
25c945ad9a59
·georget on Sep 13 2017, 11:05.

Sep 12 2017

build:fix use imported hdf5 path, #blamedebian
6357db487983
·georget on Sep 12 2017, 16:51.
build:fix fix hdf5 include dirs
fd1f6982eaf8
·georget on Sep 12 2017, 16:34.
build:fix well...
e7d68c9347c5
·georget on Sep 12 2017, 16:28.
build:fix add yaml include dirs #blame-debian
b928052f5fbc
·georget on Sep 12 2017, 16:20.
build: fix the fix, std(11)(14) compilation
569af6df0266
·georget on Sep 12 2017, 15:58.
build: Add SpecMiCPConfig.cmake : package file
990fa8a6d5ec
·georget on Sep 12 2017, 13:20.

Sep 11 2017

build: refactor cmake file for cmake config file
9f0bfa6957ca
·georget on Sep 11 2017, 15:59.

Aug 22 2017

doc: More documentation !
4728ae8e7325
·georget on Aug 22 2017, 22:03.

Aug 4 2017

fix propagates typo correction
ca7b5e361a03
·georget on Aug 4 2017, 19:12.
Documentation run
f7c95635bdac
·georget on Aug 4 2017, 18:52.

May 16 2017

fix: compilation with clang++
b4fb4366dd98
·georget on May 16 2017, 22:57.
minor: complete specmicp bin to match unsaturated
0a6168e296d9
·georget on May 16 2017, 19:57.

Apr 28 2017

minor: format fix
338641c069f9
·georget on Apr 28 2017, 20:34.
common: fix cli parser backend
e6c26c6b2885
·georget on Apr 28 2017, 20:15.

Apr 21 2017

specmicp:bin update to match reactmicp-unsaturated
c0da2ae5f913
·georget on Apr 21 2017, 20:18.
database: add ENV reader for db
65d091e2f810
·georget on Apr 21 2017, 20:16.

Apr 20 2017

common:log correct segfault of if no all_io_files
0fc353dd99de
·georget on Apr 20 2017, 17:47.

Apr 18 2017

common: Add io files tracker
6ab3d4f897e0
·georget on Apr 18 2017, 23:01.

specmicp/srcmaster856cb1763aad225c583ccda…

Nov 2 2018

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specmicp/src
master856cb1763aad225c583ccda…